Wall clock time and date at job start Tue Mar 31 2020 19:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47293 * 2 1 4 4 O 1.42905 * 109.46996 * 119.99600 * 2 1 3 5 5 C 1.42899 * 113.99778 * 90.00183 * 4 2 1 6 6 C 1.50699 * 109.46785 * 179.97438 * 5 4 2 7 7 C 1.38369 * 119.84874 * 269.72230 * 6 5 4 8 8 C 1.37946 * 120.14869 * 179.72668 * 7 6 5 9 9 C 1.39620 * 119.84877 * 0.56938 * 8 7 6 10 10 C 1.47727 * 120.15031 * 179.68199 * 9 8 7 11 11 O 1.21474 * 120.00114 * 180.02562 * 10 9 8 12 12 O 1.34704 * 120.00035 * 0.02562 * 10 9 8 13 13 C 1.45205 * 117.00116 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47218 * 180.02562 * 13 12 10 15 15 O 1.21283 * 120.00200 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00206 * 180.02562 * 14 13 12 17 17 C 1.46501 * 120.00185 * 180.02562 * 16 14 13 18 18 C 1.50698 * 109.46874 * 179.97438 * 17 16 14 19 19 H 1.07993 * 120.00439 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99648 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00495 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00119 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47029 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47262 * 119.99963 * 22 20 18 25 25 H 1.48497 * 109.47631 * 240.00151 * 22 20 18 26 26 C 1.39630 * 119.70349 * 359.70863 * 9 8 7 27 27 C 1.37945 * 119.84276 * 359.97438 * 26 9 8 28 28 H 1.09008 * 109.47142 * 299.99897 * 1 2 3 29 29 H 1.08992 * 109.47123 * 59.99863 * 1 2 3 30 30 H 1.09000 * 109.47214 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46955 * 239.99484 * 2 1 3 32 32 H 1.08999 * 109.47130 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46694 * 299.99854 * 3 2 1 34 34 H 1.08996 * 109.46889 * 59.99514 * 3 2 1 35 35 H 1.08997 * 109.47171 * 299.99768 * 5 4 2 36 36 H 1.08997 * 109.47442 * 59.99964 * 5 4 2 37 37 H 1.07997 * 119.92371 * 359.97438 * 7 6 5 38 38 H 1.08004 * 120.07165 * 180.28019 * 8 7 6 39 39 H 1.08993 * 109.47149 * 299.99988 * 13 12 10 40 40 H 1.08995 * 109.46881 * 60.00246 * 13 12 10 41 41 H 0.97003 * 119.99892 * 0.02562 * 16 14 13 42 42 H 1.08993 * 109.46806 * 299.99625 * 17 16 14 43 43 H 1.08995 * 109.47260 * 59.99904 * 17 16 14 44 44 H 0.96994 * 120.00160 * 179.97438 * 21 20 18 45 45 H 1.07998 * 120.08088 * 179.97438 * 26 9 8 46 46 H 1.08009 * 119.92243 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2001 -2.0781 0.9888 6 6 2.7014 -2.6830 2.2747 7 6 4.0620 -2.7647 2.5130 8 6 4.5276 -3.3121 3.6905 9 6 3.6228 -3.7952 4.6377 10 6 4.1142 -4.3891 5.8979 11 8 3.3246 -4.8091 6.7199 12 8 5.4380 -4.4651 6.1354 13 6 5.8488 -5.0602 7.3945 14 6 7.3531 -5.0587 7.4838 15 8 8.0140 -4.6007 6.5759 16 7 7.9641 -5.5663 8.5726 17 6 9.4266 -5.5643 8.6596 18 6 9.8528 -6.1821 9.9663 19 1 9.1089 -6.5408 10.6622 20 6 11.1927 -6.2904 10.2730 21 7 12.0987 -5.8542 9.4254 22 14 11.7212 -7.0569 11.8925 23 1 10.5189 -7.4652 12.6625 24 1 12.5649 -8.2491 11.6239 25 1 12.5000 -6.0663 12.6782 26 6 2.2512 -3.7150 4.3884 27 6 1.7992 -3.1592 3.2096 28 1 -0.3634 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.2538 -2.5433 0.7126 36 1 2.9319 -2.2467 0.1988 37 1 4.7609 -2.3953 1.7771 38 1 5.5897 -3.3710 3.8771 39 1 5.4356 -4.4826 8.2213 40 1 5.4823 -6.0853 7.4485 41 1 7.4356 -5.9330 9.2986 42 1 9.8405 -6.1411 7.8325 43 1 9.7923 -4.5390 8.6065 44 1 13.0413 -5.9300 9.6414 45 1 1.5460 -4.0872 5.1167 46 1 0.7386 -3.0961 3.0155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007865702.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:42 Heat of formation + Delta-G solvation = -174.040555 kcal Electronic energy + Delta-G solvation = -26836.712383 eV Core-core repulsion = 22690.418933 eV Total energy + Delta-G solvation = -4146.293450 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.87836 -40.63347 -40.10201 -38.95771 -37.57703 -36.19661 -34.43388 -34.32024 -32.58280 -32.10071 -30.82072 -28.75022 -28.12727 -27.44655 -24.79521 -23.83190 -23.72635 -22.20510 -21.78039 -21.66183 -19.52040 -19.00789 -18.24968 -17.86960 -17.81655 -17.38558 -17.04651 -16.81706 -16.60192 -16.22379 -16.09740 -15.60483 -15.43709 -15.04139 -14.64823 -14.61852 -14.52840 -14.20735 -14.08397 -13.84641 -13.74110 -13.60133 -13.32423 -13.19015 -12.99270 -12.91911 -12.76119 -12.36162 -12.30599 -12.22995 -12.06656 -11.96740 -11.78896 -11.59606 -11.47538 -10.93830 -10.83647 -10.52889 -10.07287 -10.05717 -9.94469 -8.30224 -6.46755 -0.51650 0.31564 1.16332 1.30147 1.44602 1.44793 1.53099 1.58646 2.32741 2.48933 2.54054 3.02131 3.05250 3.48740 3.66831 3.74170 3.80674 3.91977 4.01550 4.02818 4.06739 4.13936 4.21589 4.26130 4.33476 4.48243 4.58410 4.71667 4.78141 4.90243 4.95355 4.96051 4.98206 5.00656 5.08615 5.21136 5.21459 5.26522 5.32846 5.35571 5.40827 5.44798 5.62026 5.76536 5.81371 6.30991 6.47346 6.62297 6.76248 7.19432 7.34123 8.82119 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.027346 B = 0.001564 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.685447 B =17900.538385 C =18643.229834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.074 3.926 3 C -0.152 4.152 4 O -0.399 6.399 5 C 0.098 3.902 6 C -0.056 4.056 7 C -0.113 4.113 8 C -0.071 4.071 9 C -0.139 4.139 10 C 0.510 3.490 11 O -0.524 6.524 12 O -0.342 6.342 13 C 0.060 3.940 14 C 0.500 3.500 15 O -0.583 6.583 16 N -0.698 5.698 17 C 0.266 3.734 18 C -0.557 4.557 19 H 0.086 0.914 20 C 0.005 3.995 21 N -0.930 5.930 22 Si 0.985 3.015 23 H -0.253 1.253 24 H -0.279 1.279 25 H -0.279 1.279 26 C -0.058 4.058 27 C -0.108 4.108 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.150 0.850 38 H 0.134 0.866 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.413 0.587 42 H -0.007 1.007 43 H -0.007 1.007 44 H 0.269 0.731 45 H 0.146 0.854 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.149 8.589 -19.035 34.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.017 3.983 3 C -0.209 4.209 4 O -0.319 6.319 5 C 0.022 3.978 6 C -0.056 4.056 7 C -0.131 4.131 8 C -0.089 4.089 9 C -0.140 4.140 10 C 0.357 3.643 11 O -0.415 6.415 12 O -0.258 6.258 13 C -0.017 4.017 14 C 0.286 3.714 15 O -0.463 6.463 16 N -0.349 5.349 17 C 0.143 3.857 18 C -0.594 4.594 19 H 0.104 0.896 20 C -0.195 4.195 21 N -0.568 5.568 22 Si 0.808 3.192 23 H -0.176 1.176 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.076 4.076 27 C -0.125 4.125 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.167 0.833 38 H 0.151 0.849 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.249 0.751 42 H 0.011 0.989 43 H 0.011 0.989 44 H 0.078 0.922 45 H 0.164 0.836 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -26.651 8.890 -19.263 34.064 hybrid contribution 0.728 -0.619 1.044 1.416 sum -25.923 8.270 -18.219 32.746 Atomic orbital electron populations 1.22295 0.95193 1.02728 1.02904 1.22297 0.94305 0.93900 0.87812 1.21901 1.01566 0.94468 1.02957 1.88003 1.86991 1.19809 1.37137 1.21498 1.01206 0.81710 0.93354 1.20182 0.93350 0.95830 0.96222 1.21292 0.95845 0.98883 0.97098 1.21606 1.00224 0.94179 0.92870 1.19201 0.95353 1.06682 0.92781 1.21615 0.79870 0.75604 0.87254 1.90805 1.56690 1.46421 1.47551 1.86592 1.25592 1.73895 1.39679 1.22787 0.90953 1.02416 0.85505 1.20634 0.90030 0.78214 0.82507 1.90683 1.67913 1.47921 1.39800 1.46033 1.08974 1.60208 1.19700 1.18647 0.75283 0.95140 0.96592 1.21642 0.93282 1.41374 1.03142 0.89581 1.26043 0.96355 0.95516 1.01556 1.70135 1.01797 1.46837 1.38073 0.85102 0.78689 0.77676 0.77694 1.17641 1.20499 1.20515 1.21394 0.92908 0.95616 0.97732 1.21284 1.01317 0.97735 0.92183 0.92723 0.90223 0.92008 0.90686 0.92531 0.89442 0.92761 0.90171 0.90617 0.83253 0.84854 0.85716 0.85607 0.75091 0.98874 0.98919 0.92205 0.83645 0.82215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 9.53 71.98 0.69 -0.65 16 2 C 0.07 0.72 3.34 30.60 0.10 0.83 16 3 C -0.15 -1.45 9.56 71.98 0.69 -0.76 16 4 O -0.40 -5.93 9.97 -148.98 -1.49 -7.42 16 5 C 0.10 1.08 5.87 71.24 0.42 1.50 16 6 C -0.06 -0.85 5.52 -19.80 -0.11 -0.96 16 7 C -0.11 -2.02 9.68 22.23 0.22 -1.80 16 8 C -0.07 -1.61 9.62 22.53 0.22 -1.39 16 9 C -0.14 -3.40 5.87 -20.10 -0.12 -3.52 16 10 C 0.51 14.87 7.90 70.33 0.56 15.42 16 11 O -0.52 -16.20 16.14 19.92 0.32 -15.87 16 12 O -0.34 -11.16 9.01 -49.75 -0.45 -11.60 16 13 C 0.06 1.80 5.95 71.24 0.42 2.23 16 14 C 0.50 20.38 7.91 87.66 0.69 21.07 16 15 O -0.58 -29.58 16.50 15.76 0.26 -29.32 16 16 N -0.70 -29.07 5.55 -466.80 -2.59 -31.66 16 17 C 0.27 14.42 5.43 85.63 0.46 14.88 16 18 C -0.56 -29.88 9.28 25.60 0.24 -29.64 16 19 H 0.09 4.16 7.60 -2.91 -0.02 4.13 16 20 C 0.01 0.28 5.46 84.65 0.46 0.74 16 21 N -0.93 -55.63 13.29 21.45 0.28 -55.35 16 22 Si 0.99 42.00 29.54 68.60 2.03 44.03 16 23 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 24 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 26 C -0.06 -1.13 9.60 22.54 0.22 -0.92 16 27 C -0.11 -1.61 9.68 22.23 0.22 -1.39 16 28 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.06 0.41 7.87 -2.39 -0.02 0.39 16 31 H 0.08 0.51 7.79 -2.39 -0.02 0.49 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 35 H 0.08 0.57 7.81 -2.39 -0.02 0.55 16 36 H 0.08 0.63 8.02 -2.39 -0.02 0.61 16 37 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 38 H 0.13 3.34 7.61 -2.91 -0.02 3.31 16 39 H 0.13 3.12 8.14 -2.39 -0.02 3.10 16 40 H 0.13 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.41 13.85 8.32 -92.71 -0.77 13.08 16 42 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 43 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 44 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 45 H 0.15 2.59 7.65 -2.91 -0.02 2.57 16 46 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -76.10 401.85 3.95 -72.15 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.22 Total: 19.41 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: 5.37 Total: 15.63 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -2.30 Total: -87.01 kcal Atomic # 8 Polarization: -62.86 SS G_CDS: -1.35 Total: -64.21 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -76.10 3.95 -72.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007865702.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.889 kcal (2) G-P(sol) polarization free energy of solvation -76.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds