Wall clock time and date at job start Tue Mar 31 2020 18:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.35674 * 116.99614 * 2 1 4 4 C 1.39278 * 119.83516 * 0.02562 * 3 2 1 5 5 C 1.36417 * 120.40592 * 179.97438 * 4 3 2 6 6 C 1.40175 * 120.06316 * 359.97438 * 5 4 3 7 7 C 1.46481 * 120.17073 * 180.27779 * 6 5 4 8 8 O 1.21339 * 120.00223 * 179.72124 * 7 6 5 9 9 C 1.40654 * 119.66042 * 0.02562 * 6 5 4 10 10 O 1.35599 * 120.19489 * 180.02562 * 9 6 5 11 11 C 1.42908 * 117.00057 * 180.02562 * 10 9 6 12 12 C 1.50693 * 109.47199 * 179.97438 * 11 10 9 13 13 O 1.21279 * 120.00055 * 354.91917 * 12 11 10 14 14 N 1.34782 * 119.99823 * 174.91843 * 12 11 10 15 15 C 1.46496 * 119.99851 * 185.39359 * 14 12 11 16 16 C 1.50709 * 109.47006 * 90.00365 * 15 14 12 17 17 H 1.07995 * 119.99692 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00128 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99830 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00078 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47188 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47039 * 120.00056 * 20 18 16 23 23 H 1.48503 * 109.46998 * 239.99940 * 20 18 16 24 24 C 1.46500 * 119.99737 * 5.39476 * 14 12 11 25 25 C 1.53009 * 109.46707 * 124.24975 * 24 14 12 26 26 C 1.52993 * 109.47077 * 244.24362 * 24 14 12 27 27 C 1.38424 * 119.60221 * 0.02562 * 9 6 5 28 28 H 1.08991 * 109.47097 * 300.00565 * 1 2 3 29 29 H 1.09000 * 109.46915 * 60.00527 * 1 2 3 30 30 H 1.08993 * 109.46699 * 180.02562 * 1 2 3 31 31 H 1.08007 * 119.79615 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.96857 * 180.02562 * 5 4 3 33 33 H 1.08004 * 119.99860 * 359.72295 * 7 6 5 34 34 H 1.08994 * 109.46719 * 300.00110 * 11 10 9 35 35 H 1.08997 * 109.46534 * 59.99871 * 11 10 9 36 36 H 1.09000 * 109.46948 * 210.00011 * 15 14 12 37 37 H 1.08999 * 109.47333 * 330.00299 * 15 14 12 38 38 H 0.96995 * 119.99406 * 179.97438 * 19 18 16 39 39 H 1.08998 * 109.47369 * 4.25016 * 24 14 12 40 40 H 1.08997 * 109.47442 * 55.63706 * 25 24 14 41 41 H 1.09004 * 109.46778 * 175.63972 * 25 24 14 42 42 H 1.09000 * 109.46545 * 295.63669 * 25 24 14 43 43 H 1.09008 * 109.47128 * 64.59006 * 26 24 14 44 44 H 1.09002 * 109.47231 * 184.59001 * 26 24 14 45 45 H 1.08995 * 109.47462 * 304.59256 * 26 24 14 46 46 H 1.07996 * 120.03183 * 179.97438 * 27 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2830 2.3747 0.0005 5 6 1.8901 3.5964 0.0011 6 6 3.2890 3.6853 0.0016 7 6 3.9433 4.9958 0.0083 8 8 5.1545 5.0692 0.0139 9 6 4.0612 2.5097 0.0011 10 8 5.4152 2.5831 0.0021 11 6 6.1320 1.3468 0.0009 12 6 7.6130 1.6248 0.0017 13 8 8.0160 2.7650 -0.0899 14 7 8.4898 0.6063 0.1042 15 6 9.9234 0.8832 0.2240 16 6 10.2900 1.0128 1.6800 17 1 9.5309 0.9006 2.4400 18 6 11.5944 1.2746 2.0418 19 7 12.5189 1.4108 1.1163 20 14 12.0486 1.4360 3.8465 21 1 10.8360 1.2423 4.6815 22 1 13.0606 0.4070 4.1962 23 1 12.6104 2.7878 4.0966 24 6 8.0092 -0.7776 0.0957 25 6 8.7104 -1.5541 -1.0207 26 6 8.3171 -1.4326 1.4436 27 6 3.4306 1.2774 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0276 0.0005 31 1 0.2048 2.3112 0.0005 32 1 1.2923 4.4959 0.0019 33 1 3.3477 5.8968 0.0084 34 1 5.8690 0.7736 0.8899 35 1 5.8702 0.7761 -0.8900 36 1 10.4898 0.0656 -0.2219 37 1 10.1584 1.8130 -0.2941 38 1 13.4364 1.5953 1.3709 39 1 6.9328 -0.7873 -0.0756 40 1 9.7902 -1.4792 -0.8926 41 1 8.4112 -2.6014 -0.9781 42 1 8.4292 -1.1349 -1.9868 43 1 7.7532 -0.9296 2.2293 44 1 8.0337 -2.4846 1.4095 45 1 9.3837 -1.3503 1.6524 46 1 4.0167 0.3704 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053799144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:37 Heat of formation + Delta-G solvation = -106.538162 kcal Electronic energy + Delta-G solvation = -29262.845609 eV Core-core repulsion = 25119.479282 eV Total energy + Delta-G solvation = -4143.366327 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.92063 -39.66506 -38.97360 -38.03489 -36.60271 -35.85325 -32.83228 -31.36662 -30.87891 -30.47785 -28.92741 -27.83187 -26.83641 -26.49741 -24.25184 -23.22853 -22.25878 -21.31940 -21.02381 -19.01930 -18.31847 -17.14076 -16.90039 -16.59894 -16.53428 -16.28880 -16.10704 -15.91683 -15.11236 -15.01691 -14.60463 -14.27455 -14.24620 -13.96228 -13.65788 -13.51091 -13.17138 -13.05488 -12.80138 -12.66372 -12.44547 -12.31488 -12.17138 -11.70075 -11.57073 -11.48629 -11.35705 -11.18120 -10.97677 -10.84467 -10.81443 -10.58835 -10.37619 -9.99653 -9.51735 -9.51115 -8.90024 -8.88279 -8.39605 -8.33215 -7.66472 -6.01347 -4.04703 0.61668 1.15154 2.51679 2.70069 2.91626 3.31978 3.34101 3.40679 3.44710 3.60356 4.01089 4.27543 4.35768 4.47580 4.63388 4.67875 4.73022 4.79449 4.95150 5.05197 5.09367 5.15915 5.21256 5.22664 5.23787 5.33238 5.36588 5.53586 5.60412 5.80927 5.93375 6.00299 6.03002 6.12349 6.21025 6.23705 6.32812 6.57335 6.89562 6.94783 7.06710 7.27150 7.49400 7.57067 7.72457 7.95754 8.26697 8.38103 8.92242 9.07469 9.59377 11.06889 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013562 B = 0.003105 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.089042 B = 9016.268902 C =10071.916453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.198 3.802 4 C -0.264 4.264 5 C 0.007 3.993 6 C -0.262 4.262 7 C 0.367 3.633 8 O -0.425 6.425 9 C 0.229 3.771 10 O -0.249 6.249 11 C 0.032 3.968 12 C 0.508 3.492 13 O -0.507 6.507 14 N -0.591 5.591 15 C 0.246 3.754 16 C -0.522 4.522 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.894 5.894 20 Si 0.895 3.105 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.132 3.868 25 C -0.162 4.162 26 C -0.162 4.162 27 C -0.266 4.266 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.133 0.867 32 H 0.140 0.860 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.039 0.961 37 H 0.044 0.956 38 H 0.262 0.738 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.087 0.913 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.825 -4.565 -3.820 27.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.151 3.849 4 C -0.282 4.282 5 C -0.011 4.011 6 C -0.264 4.264 7 C 0.223 3.777 8 O -0.296 6.296 9 C 0.179 3.821 10 O -0.158 6.158 11 C -0.047 4.047 12 C 0.292 3.708 13 O -0.381 6.381 14 N -0.325 5.325 15 C 0.128 3.872 16 C -0.560 4.560 17 H 0.078 0.922 18 C -0.141 4.141 19 N -0.533 5.533 20 Si 0.723 3.277 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 C 0.028 3.972 25 C -0.220 4.220 26 C -0.220 4.220 27 C -0.285 4.285 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.151 0.849 32 H 0.158 0.842 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.106 0.894 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -25.484 -3.896 -3.894 26.073 hybrid contribution -0.266 -0.295 1.065 1.136 sum -25.750 -4.191 -2.829 26.242 Atomic orbital electron populations 1.23141 0.77792 1.04269 1.01723 1.86051 1.21914 1.26988 1.87428 1.18954 0.91460 0.84270 0.90178 1.20808 1.00296 0.92116 1.15026 1.20689 0.92149 0.97694 0.90597 1.20380 0.93533 0.94597 1.17865 1.23575 0.90240 0.90879 0.73002 1.90757 1.16906 1.89546 1.32390 1.19086 0.83218 0.92329 0.87484 1.86436 1.13460 1.30748 1.85125 1.22891 0.92976 0.85746 1.03069 1.19593 0.86091 0.86120 0.79015 1.90766 1.79045 1.20740 1.47584 1.48254 1.09445 1.03760 1.71052 1.19313 0.72657 0.97896 0.97375 1.21487 0.93826 1.48616 0.92114 0.92236 1.24927 0.96375 0.95196 0.97628 1.69944 1.01920 1.48963 1.32504 0.86480 0.78341 0.77751 0.85096 1.19810 1.21033 1.20905 1.21016 0.97135 0.82858 0.96229 1.22160 1.02942 0.99135 0.97803 1.22214 1.05285 0.98463 0.96086 1.20440 0.92737 0.97850 1.17479 0.92244 0.92251 0.87995 0.84895 0.84197 0.88709 0.89273 0.89427 0.94344 0.93765 0.92813 0.91346 0.90809 0.92112 0.92877 0.93033 0.93045 0.89407 0.83985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.80 101.05 0.99 1.12 16 2 O -0.31 -2.90 10.48 -18.72 -0.20 -3.10 16 3 C 0.20 2.06 6.69 -39.01 -0.26 1.80 16 4 C -0.26 -2.19 8.96 -39.85 -0.36 -2.55 16 5 C 0.01 0.06 9.73 -39.51 -0.38 -0.32 16 6 C -0.26 -3.27 5.88 -104.94 -0.62 -3.89 16 7 C 0.37 4.86 11.42 34.05 0.39 5.24 16 8 O -0.43 -8.34 15.98 -16.43 -0.26 -8.60 16 9 C 0.23 3.36 6.70 -38.60 -0.26 3.10 16 10 O -0.25 -4.63 7.74 -48.76 -0.38 -5.01 16 11 C 0.03 0.53 3.55 36.00 0.13 0.66 16 12 C 0.51 11.29 7.73 -10.99 -0.08 11.21 16 13 O -0.51 -14.04 16.06 -14.30 -0.23 -14.27 16 14 N -0.59 -12.61 2.39 -167.47 -0.40 -13.01 16 15 C 0.25 6.41 4.73 -5.19 -0.02 6.39 16 16 C -0.52 -14.65 7.71 -34.44 -0.27 -14.92 16 17 H 0.06 1.67 7.59 -52.49 -0.40 1.27 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 20 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 21 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 24 C 0.13 2.13 3.12 -67.93 -0.21 1.92 16 25 C -0.16 -2.37 9.19 37.16 0.34 -2.03 16 26 C -0.16 -2.62 8.74 37.15 0.32 -2.30 16 27 C -0.27 -3.27 8.97 -39.33 -0.35 -3.62 16 28 H 0.06 0.23 7.64 -51.93 -0.40 -0.17 16 29 H 0.06 0.22 7.65 -51.93 -0.40 -0.17 16 30 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.13 0.71 6.26 -52.48 -0.33 0.38 16 32 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.10 0.77 8.06 -52.48 -0.42 0.35 16 34 H 0.09 1.28 7.37 -51.93 -0.38 0.89 16 35 H 0.09 1.17 7.25 -51.93 -0.38 0.80 16 36 H 0.04 1.00 6.13 -51.93 -0.32 0.68 16 37 H 0.04 1.33 7.35 -51.93 -0.38 0.95 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.07 0.89 5.85 -51.93 -0.30 0.59 16 40 H 0.07 1.24 6.34 -51.93 -0.33 0.92 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.09 1.70 6.60 -51.93 -0.34 1.36 16 46 H 0.14 1.59 6.30 -52.49 -0.33 1.26 16 LS Contribution 382.67 15.07 5.77 5.77 Total: -1.00 -38.28 382.67 -7.11 -45.39 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -6.38 Total: -1.78 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -0.74 Total: 3.46 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.34 Total: -38.97 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -1.07 Total: -30.97 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.28 -7.11 -45.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053799144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.148 kcal (2) G-P(sol) polarization free energy of solvation -38.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds