Wall clock time and date at job start Tue Mar 31 2020 18:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.35674 * 116.99614 * 2 1 4 4 C 1.39278 * 119.83516 * 0.02562 * 3 2 1 5 5 C 1.36417 * 120.40592 * 179.97438 * 4 3 2 6 6 C 1.40175 * 120.06316 * 359.97438 * 5 4 3 7 7 C 1.46481 * 120.17073 * 180.27779 * 6 5 4 8 8 O 1.21339 * 120.00223 * 179.72124 * 7 6 5 9 9 C 1.40654 * 119.66042 * 0.02562 * 6 5 4 10 10 O 1.35599 * 120.19489 * 180.02562 * 9 6 5 11 11 C 1.42908 * 117.00057 * 180.02562 * 10 9 6 12 12 C 1.50693 * 109.47199 * 179.97438 * 11 10 9 13 13 O 1.21279 * 120.00055 * 354.91917 * 12 11 10 14 14 N 1.34782 * 119.99823 * 174.91843 * 12 11 10 15 15 C 1.46496 * 119.99851 * 185.39359 * 14 12 11 16 16 C 1.50709 * 109.47006 * 90.00365 * 15 14 12 17 17 H 1.07995 * 119.99692 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00128 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99830 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00078 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47188 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47039 * 120.00056 * 20 18 16 23 23 H 1.48503 * 109.46998 * 239.99940 * 20 18 16 24 24 C 1.46500 * 119.99737 * 5.39476 * 14 12 11 25 25 C 1.53009 * 109.46707 * 124.24975 * 24 14 12 26 26 C 1.52993 * 109.47077 * 244.24362 * 24 14 12 27 27 C 1.38424 * 119.60221 * 0.02562 * 9 6 5 28 28 H 1.08991 * 109.47097 * 300.00565 * 1 2 3 29 29 H 1.09000 * 109.46915 * 60.00527 * 1 2 3 30 30 H 1.08993 * 109.46699 * 180.02562 * 1 2 3 31 31 H 1.08007 * 119.79615 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.96857 * 180.02562 * 5 4 3 33 33 H 1.08004 * 119.99860 * 359.72295 * 7 6 5 34 34 H 1.08994 * 109.46719 * 300.00110 * 11 10 9 35 35 H 1.08997 * 109.46534 * 59.99871 * 11 10 9 36 36 H 1.09000 * 109.46948 * 210.00011 * 15 14 12 37 37 H 1.08999 * 109.47333 * 330.00299 * 15 14 12 38 38 H 0.96995 * 119.99406 * 179.97438 * 19 18 16 39 39 H 1.08998 * 109.47369 * 4.25016 * 24 14 12 40 40 H 1.08997 * 109.47442 * 55.63706 * 25 24 14 41 41 H 1.09004 * 109.46778 * 175.63972 * 25 24 14 42 42 H 1.09000 * 109.46545 * 295.63669 * 25 24 14 43 43 H 1.09008 * 109.47128 * 64.59006 * 26 24 14 44 44 H 1.09002 * 109.47231 * 184.59001 * 26 24 14 45 45 H 1.08995 * 109.47462 * 304.59256 * 26 24 14 46 46 H 1.07996 * 120.03183 * 179.97438 * 27 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2830 2.3747 0.0005 5 6 1.8901 3.5964 0.0011 6 6 3.2890 3.6853 0.0016 7 6 3.9433 4.9958 0.0083 8 8 5.1545 5.0692 0.0139 9 6 4.0612 2.5097 0.0011 10 8 5.4152 2.5831 0.0021 11 6 6.1320 1.3468 0.0009 12 6 7.6130 1.6248 0.0017 13 8 8.0160 2.7650 -0.0899 14 7 8.4898 0.6063 0.1042 15 6 9.9234 0.8832 0.2240 16 6 10.2900 1.0128 1.6800 17 1 9.5309 0.9006 2.4400 18 6 11.5944 1.2746 2.0418 19 7 12.5189 1.4108 1.1163 20 14 12.0486 1.4360 3.8465 21 1 10.8360 1.2423 4.6815 22 1 13.0606 0.4070 4.1962 23 1 12.6104 2.7878 4.0966 24 6 8.0092 -0.7776 0.0957 25 6 8.7104 -1.5541 -1.0207 26 6 8.3171 -1.4326 1.4436 27 6 3.4306 1.2774 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0276 0.0005 31 1 0.2048 2.3112 0.0005 32 1 1.2923 4.4959 0.0019 33 1 3.3477 5.8968 0.0084 34 1 5.8690 0.7736 0.8899 35 1 5.8702 0.7761 -0.8900 36 1 10.4898 0.0656 -0.2219 37 1 10.1584 1.8130 -0.2941 38 1 13.4364 1.5953 1.3709 39 1 6.9328 -0.7873 -0.0756 40 1 9.7902 -1.4792 -0.8926 41 1 8.4112 -2.6014 -0.9781 42 1 8.4292 -1.1349 -1.9868 43 1 7.7532 -0.9296 2.2293 44 1 8.0337 -2.4846 1.4095 45 1 9.3837 -1.3503 1.6524 46 1 4.0167 0.3704 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053799144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:36 Heat of formation + Delta-G solvation = -132.564871 kcal Electronic energy + Delta-G solvation = -29263.974211 eV Core-core repulsion = 25119.479282 eV Total energy + Delta-G solvation = -4144.494929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.86904 -40.94306 -40.09586 -39.27908 -37.70538 -37.31030 -34.97257 -32.49973 -32.14763 -31.57340 -30.38601 -28.48713 -28.25973 -27.94631 -25.09072 -24.99291 -23.48907 -22.69784 -21.95527 -19.94862 -19.76773 -18.65670 -18.29327 -17.99324 -17.60762 -17.48005 -17.13170 -16.84465 -16.66738 -16.18548 -15.91543 -15.72047 -15.36983 -15.06222 -14.98074 -14.90049 -14.47887 -14.34822 -13.96780 -13.79003 -13.43797 -13.38123 -13.37104 -13.19066 -13.12444 -12.85417 -12.78104 -12.52809 -12.48533 -12.25749 -12.13339 -11.94537 -11.71700 -11.66416 -11.53261 -10.69139 -10.63313 -10.54422 -9.72550 -9.51534 -9.18178 -8.22434 -6.34349 -0.22734 0.35862 1.32986 1.36541 1.45634 1.52262 1.61267 1.70214 2.21951 2.35786 2.59574 2.77642 3.07468 3.40628 3.45539 3.70372 3.77151 3.95912 3.96825 4.01630 4.13978 4.25368 4.32355 4.35123 4.44498 4.46852 4.48468 4.57674 4.79511 4.81964 4.85696 4.95533 5.01938 5.08784 5.09340 5.18204 5.20021 5.26999 5.41643 5.49940 5.56187 5.60784 5.82175 6.07233 6.15841 6.35219 6.65475 6.74359 6.78852 7.24428 7.39605 8.85624 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013562 B = 0.003105 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.089042 B = 9016.268902 C =10071.916453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.327 6.327 3 C 0.199 3.801 4 C -0.254 4.254 5 C 0.027 3.973 6 C -0.289 4.289 7 C 0.371 3.629 8 O -0.505 6.505 9 C 0.194 3.806 10 O -0.292 6.292 11 C 0.048 3.952 12 C 0.495 3.505 13 O -0.579 6.579 14 N -0.591 5.591 15 C 0.263 3.737 16 C -0.529 4.529 17 H 0.055 0.945 18 C 0.006 3.994 19 N -0.929 5.929 20 Si 0.963 3.037 21 H -0.267 1.267 22 H -0.267 1.267 23 H -0.285 1.285 24 C 0.122 3.878 25 C -0.157 4.157 26 C -0.157 4.157 27 C -0.279 4.279 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.172 0.828 32 H 0.188 0.812 33 H 0.153 0.847 34 H 0.114 0.886 35 H 0.123 0.877 36 H 0.036 0.964 37 H -0.010 1.010 38 H 0.266 0.734 39 H 0.112 0.888 40 H 0.041 0.959 41 H 0.101 0.899 42 H 0.057 0.943 43 H 0.045 0.955 44 H 0.094 0.906 45 H 0.048 0.952 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.661 -6.384 -3.048 32.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.239 6.239 3 C 0.152 3.848 4 C -0.272 4.272 5 C 0.009 3.991 6 C -0.291 4.291 7 C 0.233 3.767 8 O -0.381 6.381 9 C 0.146 3.854 10 O -0.203 6.203 11 C -0.030 4.030 12 C 0.282 3.718 13 O -0.458 6.458 14 N -0.324 5.324 15 C 0.142 3.858 16 C -0.568 4.568 17 H 0.073 0.927 18 C -0.193 4.193 19 N -0.570 5.570 20 Si 0.788 3.212 21 H -0.192 1.192 22 H -0.192 1.192 23 H -0.212 1.212 24 C 0.019 3.981 25 C -0.215 4.215 26 C -0.215 4.215 27 C -0.299 4.299 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.136 0.864 31 H 0.189 0.811 32 H 0.205 0.795 33 H 0.169 0.831 34 H 0.132 0.868 35 H 0.140 0.860 36 H 0.054 0.946 37 H 0.008 0.992 38 H 0.075 0.925 39 H 0.130 0.870 40 H 0.060 0.940 41 H 0.119 0.881 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.112 0.888 45 H 0.067 0.933 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -30.401 -5.788 -3.123 31.104 hybrid contribution 0.980 0.189 0.769 1.260 sum -29.421 -5.599 -2.355 30.041 Atomic orbital electron populations 1.23509 0.75363 1.06025 1.03143 1.86040 1.24398 1.26546 1.86914 1.19109 0.91033 0.85568 0.89110 1.21280 1.02110 0.91076 1.12742 1.21174 0.90327 0.99777 0.87792 1.20714 0.95317 0.93693 1.19402 1.24535 0.89355 0.93127 0.69680 1.90754 1.20265 1.90532 1.36564 1.19501 0.81729 0.94332 0.89808 1.86385 1.15973 1.31399 1.86557 1.22717 0.88450 0.86105 1.05730 1.20676 0.88771 0.85087 0.77281 1.90720 1.80732 1.23617 1.50744 1.48279 1.07620 1.06306 1.70154 1.18739 0.76016 0.95108 0.95910 1.21696 0.93965 1.48360 0.92783 0.92703 1.25825 0.96361 0.94798 1.02279 1.70065 1.02355 1.49824 1.34715 0.85429 0.78417 0.77799 0.79557 1.19162 1.19156 1.21157 1.21508 0.99669 0.79780 0.97096 1.22133 1.00683 1.01368 0.97325 1.22152 1.02621 1.01075 0.95672 1.20487 0.94066 0.97036 1.18280 0.90804 0.90688 0.86351 0.81060 0.79531 0.83073 0.86787 0.85964 0.94620 0.99207 0.92528 0.87039 0.93975 0.88053 0.92397 0.93561 0.88761 0.93265 0.83558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.80 113.37 1.11 1.18 16 2 O -0.33 -4.91 10.48 -89.91 -0.94 -5.85 16 3 C 0.20 3.50 6.69 22.64 0.15 3.65 16 4 C -0.25 -3.02 8.96 22.09 0.20 -2.82 16 5 C 0.03 0.35 9.73 22.32 0.22 0.56 16 6 C -0.29 -6.87 5.88 -20.07 -0.12 -6.99 16 7 C 0.37 9.78 11.42 69.97 0.80 10.58 16 8 O -0.51 -21.19 15.98 17.76 0.28 -20.91 16 9 C 0.19 5.71 6.70 22.90 0.15 5.86 16 10 O -0.29 -11.41 7.74 -60.15 -0.47 -11.88 16 11 C 0.05 1.62 3.55 71.23 0.25 1.87 16 12 C 0.49 23.31 7.73 87.65 0.68 23.98 16 13 O -0.58 -34.96 16.06 15.96 0.26 -34.70 16 14 N -0.59 -26.40 2.39 -802.14 -1.92 -28.31 16 15 C 0.26 14.73 4.73 85.64 0.41 15.14 16 16 C -0.53 -31.29 7.71 25.60 0.20 -31.09 16 17 H 0.05 3.22 7.59 -2.91 -0.02 3.19 16 18 C 0.01 0.35 5.46 84.65 0.46 0.81 16 19 N -0.93 -58.01 13.29 21.45 0.28 -57.72 16 20 Si 0.96 46.67 29.54 68.60 2.03 48.70 16 21 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 23 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 24 C 0.12 3.81 3.12 44.99 0.14 3.95 16 25 C -0.16 -4.41 9.19 71.99 0.66 -3.75 16 26 C -0.16 -4.89 8.74 71.98 0.63 -4.26 16 27 C -0.28 -6.43 8.97 22.43 0.20 -6.23 16 28 H 0.07 0.20 7.64 -2.39 -0.02 0.18 16 29 H 0.07 0.19 7.65 -2.39 -0.02 0.17 16 30 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.17 0.72 6.26 -2.91 -0.02 0.70 16 32 H 0.19 0.57 8.06 -2.91 -0.02 0.55 16 33 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 34 H 0.11 3.18 7.37 -2.39 -0.02 3.16 16 35 H 0.12 3.15 7.25 -2.39 -0.02 3.13 16 36 H 0.04 2.00 6.13 -2.39 -0.01 1.98 16 37 H -0.01 -0.68 7.35 -2.39 -0.02 -0.69 16 38 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 39 H 0.11 2.57 5.85 -2.39 -0.01 2.56 16 40 H 0.04 1.45 6.34 -2.39 -0.02 1.43 16 41 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 42 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 44 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.05 1.92 6.60 -2.39 -0.02 1.91 16 46 H 0.15 3.02 6.30 -2.91 -0.02 3.00 16 Total: -1.00 -95.93 382.67 6.67 -89.26 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 1.00 Total: 8.97 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 6.14 Total: 12.45 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -1.63 Total: -86.03 kcal Atomic # 8 Polarization: -72.47 SS G_CDS: -0.87 Total: -73.34 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -95.93 6.67 -89.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053799144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.306 kcal (2) G-P(sol) polarization free energy of solvation -95.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds