Wall clock time and date at job start Tue Mar 31 2020 18:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47025 * 2 1 4 4 H 1.09003 * 109.47237 * 55.25692 * 3 2 1 5 5 O 1.42905 * 109.47103 * 295.25597 * 3 2 1 6 6 C 1.42904 * 113.99643 * 107.34850 * 5 3 2 7 7 C 1.50704 * 109.47378 * 175.25805 * 3 2 1 8 8 O 1.20818 * 120.00383 * 114.99906 * 7 3 2 9 9 O 1.34231 * 119.99605 * 294.99667 * 7 3 2 10 10 C 1.45197 * 116.99890 * 179.97438 * 9 7 3 11 11 C 1.50701 * 109.47395 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99932 * 358.37995 * 11 10 9 13 13 N 1.34773 * 120.00429 * 178.37390 * 11 10 9 14 14 C 1.46497 * 120.00325 * 185.18696 * 13 11 10 15 15 C 1.50695 * 109.47154 * 90.00257 * 14 13 11 16 16 H 1.08009 * 120.00202 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00461 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99686 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00466 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47297 * 89.99852 * 19 17 15 21 21 H 1.48506 * 109.47309 * 210.00061 * 19 17 15 22 22 H 1.48503 * 109.47202 * 329.99555 * 19 17 15 23 23 C 1.39925 * 119.99750 * 5.18746 * 13 11 10 24 24 C 1.38874 * 120.07541 * 291.18861 * 23 13 11 25 25 C 1.38109 * 119.93266 * 179.74249 * 24 23 13 26 26 C 1.38287 * 120.07018 * 0.53963 * 25 24 23 27 27 C 1.38285 * 120.13875 * 359.73612 * 26 25 24 28 28 C 1.38111 * 120.07056 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.47089 * 59.97916 * 1 2 3 30 30 H 1.08997 * 109.47678 * 299.97164 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47169 * 120.00007 * 2 1 3 33 33 H 1.09005 * 109.47736 * 240.00263 * 2 1 3 34 34 H 1.08992 * 109.47125 * 305.94783 * 6 5 3 35 35 H 1.09002 * 109.46921 * 65.95483 * 6 5 3 36 36 H 1.09005 * 109.46428 * 185.94832 * 6 5 3 37 37 H 1.08999 * 109.47093 * 300.00396 * 10 9 7 38 38 H 1.09004 * 109.47221 * 60.00164 * 10 9 7 39 39 H 1.08996 * 109.47370 * 210.00372 * 14 13 11 40 40 H 1.09004 * 109.46867 * 330.00316 * 14 13 11 41 41 H 0.97006 * 120.00515 * 180.02562 * 18 17 15 42 42 H 1.08004 * 120.02953 * 0.02806 * 24 23 13 43 43 H 1.08002 * 119.96740 * 180.27351 * 25 24 23 44 44 H 1.07992 * 119.92901 * 179.72223 * 26 25 24 45 45 H 1.08000 * 119.96487 * 180.02562 * 27 26 25 46 46 H 1.08005 * 120.03378 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6089 1.9803 0.8445 5 8 1.6567 2.0832 -1.2185 6 6 0.6128 3.0470 -1.0650 7 6 3.5424 1.4442 0.1175 8 8 4.2190 1.8608 -0.7926 9 8 4.1288 0.9830 1.2333 10 6 5.5798 1.0143 1.2766 11 6 6.0551 0.4610 2.5954 12 8 5.2496 0.1052 3.4294 13 7 7.3752 0.3613 2.8479 14 6 7.8388 -0.2803 4.0806 15 6 8.0303 -1.7552 3.8379 16 1 7.8266 -2.1731 2.8630 17 6 8.4645 -2.5716 4.8606 18 7 8.7121 -2.0630 6.0479 19 14 8.7027 -4.3997 4.5596 20 1 10.0936 -4.6492 4.1035 21 1 8.4535 -5.1455 5.8194 22 1 7.7500 -4.8579 3.5166 23 6 8.3029 0.8706 1.9327 24 6 8.4650 0.2626 0.6947 25 6 9.3778 0.7709 -0.2085 26 6 10.1380 1.8775 0.1230 27 6 9.9831 2.4818 1.3572 28 6 9.0677 1.9819 2.2625 29 1 -0.3633 0.5142 -0.8898 30 1 -0.3634 0.5134 0.8902 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 -0.2392 2.5837 -0.5677 35 1 0.9745 3.8817 -0.4645 36 1 0.3072 3.4108 -2.0461 37 1 5.9807 0.4092 0.4635 38 1 5.9244 2.0427 1.1683 39 1 8.7859 0.1634 4.3872 40 1 7.0979 -0.1347 4.8668 41 1 9.0180 -2.6372 6.7675 42 1 7.8746 -0.6042 0.4367 43 1 9.5012 0.3012 -1.1732 44 1 10.8543 2.2704 -0.5832 45 1 10.5779 3.3462 1.6130 46 1 8.9469 2.4546 3.2261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062326455.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:32 Heat of formation + Delta-G solvation = -131.060008 kcal Electronic energy + Delta-G solvation = -29136.012900 eV Core-core repulsion = 24991.583227 eV Total energy + Delta-G solvation = -4144.429674 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.78303 -39.88087 -38.52520 -38.00359 -36.24792 -34.91006 -33.67575 -32.77066 -30.80686 -29.72930 -29.35294 -28.43424 -26.79578 -25.95656 -23.14606 -22.65113 -22.38367 -22.11267 -20.94566 -19.25447 -18.08295 -17.65960 -17.00593 -16.57281 -16.47225 -16.30148 -16.01582 -15.59155 -15.36606 -14.96808 -14.63733 -14.29052 -14.27378 -14.00848 -13.76886 -13.35804 -13.20227 -12.93885 -12.91097 -12.56523 -12.39220 -12.22967 -12.10001 -11.93329 -11.70403 -11.52661 -11.26343 -11.12625 -11.08434 -10.89715 -10.69640 -10.65714 -10.62441 -10.22873 -9.90055 -9.80319 -9.45620 -8.73492 -8.62876 -8.49027 -7.80464 -6.11453 -4.16528 1.49681 1.59850 2.07990 2.16279 3.05975 3.27623 3.33871 3.37590 3.46759 3.77849 3.96942 4.38947 4.45215 4.52080 4.64087 4.74882 4.95189 4.99555 5.04759 5.10184 5.14331 5.16001 5.23800 5.24643 5.27355 5.32635 5.33246 5.42819 5.63028 5.74342 5.76842 5.77196 5.95805 5.98210 6.21162 6.30694 6.55423 6.64151 6.68815 6.72865 6.88533 7.13476 7.25554 7.36662 7.68675 7.83604 8.10808 8.17427 8.68565 8.87858 9.48255 10.96944 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010085 B = 0.003492 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.746695 B = 8015.754830 C = 9885.865100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.136 4.136 3 C 0.104 3.896 4 H 0.104 0.896 5 O -0.358 6.358 6 C 0.025 3.975 7 C 0.451 3.549 8 O -0.490 6.490 9 O -0.328 6.328 10 C 0.050 3.950 11 C 0.518 3.482 12 O -0.506 6.506 13 N -0.555 5.555 14 C 0.249 3.751 15 C -0.530 4.530 16 H 0.059 0.941 17 C 0.064 3.936 18 N -0.893 5.893 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.152 3.848 24 C -0.125 4.125 25 C -0.108 4.108 26 C -0.131 4.131 27 C -0.109 4.109 28 C -0.122 4.122 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.039 0.961 40 H 0.051 0.949 41 H 0.265 0.735 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.608 10.356 -13.588 19.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C 0.044 3.956 4 H 0.121 0.879 5 O -0.276 6.276 6 C -0.071 4.071 7 C 0.292 3.708 8 O -0.376 6.376 9 O -0.243 6.243 10 C -0.027 4.027 11 C 0.303 3.697 12 O -0.380 6.380 13 N -0.285 5.285 14 C 0.132 3.868 15 C -0.569 4.569 16 H 0.077 0.923 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.727 3.273 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C 0.060 3.940 24 C -0.145 4.145 25 C -0.126 4.126 26 C -0.149 4.149 27 C -0.128 4.128 28 C -0.141 4.141 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.141 0.859 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.703 10.168 -13.322 19.365 hybrid contribution 0.429 -0.934 0.043 1.029 sum -9.273 9.235 -13.279 18.644 Atomic orbital electron populations 1.21783 0.94392 1.02688 1.01962 1.21929 0.97339 0.93460 1.04656 1.21561 0.87447 0.96891 0.89703 0.87878 1.88016 1.55286 1.55979 1.28321 1.23025 0.89678 0.91179 1.03241 1.23819 0.92011 0.74679 0.80258 1.90675 1.65343 1.42226 1.39325 1.86521 1.22507 1.75697 1.39623 1.22952 0.77537 1.03545 0.98676 1.19703 0.82793 0.79609 0.87552 1.90722 1.52702 1.47587 1.46964 1.45860 1.02991 1.56877 1.22807 1.19503 0.95803 0.92157 0.79316 1.21358 1.45579 0.92463 0.97466 0.92301 1.24905 0.95110 0.99065 0.94796 1.69924 1.45398 1.35974 1.01836 0.86465 0.78440 0.84572 0.77798 1.20549 1.20981 1.19804 1.17791 0.93261 0.93004 0.89921 1.21399 0.99591 0.99366 0.94145 1.20992 0.95959 0.96506 0.99166 1.21097 1.00011 0.96855 0.96922 1.20986 0.98021 1.00003 0.93776 1.21312 0.97096 0.95512 1.00214 0.92158 0.92420 0.91720 0.88839 0.90296 0.93145 0.93643 0.88937 0.88253 0.88615 0.94339 0.93085 0.92568 0.85825 0.85947 0.86222 0.85933 0.85608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.12 37.15 0.34 -0.81 16 2 C -0.14 -1.38 5.62 -26.73 -0.15 -1.53 16 3 C 0.10 1.18 2.77 -27.88 -0.08 1.10 16 4 H 0.10 0.94 7.65 -51.93 -0.40 0.55 16 5 O -0.36 -4.13 9.52 -55.13 -0.52 -4.65 16 6 C 0.03 0.18 10.33 101.05 1.04 1.23 16 7 C 0.45 6.80 7.29 36.01 0.26 7.06 16 8 O -0.49 -8.52 16.25 -25.46 -0.41 -8.93 16 9 O -0.33 -5.50 9.73 -45.90 -0.45 -5.95 16 10 C 0.05 0.86 4.58 36.01 0.16 1.02 16 11 C 0.52 10.98 7.66 -10.99 -0.08 10.90 16 12 O -0.51 -12.61 16.06 -14.10 -0.23 -12.83 16 13 N -0.56 -11.93 2.50 -114.74 -0.29 -12.21 16 14 C 0.25 6.44 5.15 -5.20 -0.03 6.41 16 15 C -0.53 -14.85 9.39 -34.44 -0.32 -15.17 16 16 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 17 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 18 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 19 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.15 2.76 4.51 -83.69 -0.38 2.38 16 24 C -0.13 -2.04 8.36 -39.39 -0.33 -2.37 16 25 C -0.11 -1.45 10.04 -39.61 -0.40 -1.85 16 26 C -0.13 -1.63 10.04 -39.55 -0.40 -2.03 16 27 C -0.11 -1.44 10.04 -39.61 -0.40 -1.84 16 28 C -0.12 -1.94 9.71 -39.39 -0.38 -2.32 16 29 H 0.06 0.43 6.79 -51.93 -0.35 0.08 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.09 1.01 8.12 -51.93 -0.42 0.59 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.28 6.71 -51.93 -0.35 -0.07 16 35 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.10 1.60 6.55 -51.93 -0.34 1.26 16 38 H 0.10 1.50 8.07 -51.93 -0.42 1.08 16 39 H 0.04 1.01 7.88 -51.93 -0.41 0.60 16 40 H 0.05 1.46 7.36 -51.93 -0.38 1.08 16 41 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 42 H 0.12 2.00 7.60 -52.48 -0.40 1.60 16 43 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 44 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 45 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 46 H 0.13 1.94 8.06 -52.48 -0.42 1.52 16 LS Contribution 394.05 15.07 5.94 5.94 Total: -1.00 -34.48 394.05 -8.29 -42.77 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.82 Total: 0.72 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -1.23 Total: 3.89 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.45 Total: -37.62 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -1.61 Total: -32.37 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.48 -8.29 -42.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062326455.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.288 kcal (2) G-P(sol) polarization free energy of solvation -34.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds