Wall clock time and date at job start Tue Mar 31 2020 18:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47025 * 2 1 4 4 H 1.09003 * 109.47237 * 55.25692 * 3 2 1 5 5 O 1.42905 * 109.47103 * 295.25597 * 3 2 1 6 6 C 1.42904 * 113.99643 * 107.34850 * 5 3 2 7 7 C 1.50704 * 109.47378 * 175.25805 * 3 2 1 8 8 O 1.20818 * 120.00383 * 114.99906 * 7 3 2 9 9 O 1.34231 * 119.99605 * 294.99667 * 7 3 2 10 10 C 1.45197 * 116.99890 * 179.97438 * 9 7 3 11 11 C 1.50701 * 109.47395 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99932 * 358.37995 * 11 10 9 13 13 N 1.34773 * 120.00429 * 178.37390 * 11 10 9 14 14 C 1.46497 * 120.00325 * 185.18696 * 13 11 10 15 15 C 1.50695 * 109.47154 * 90.00257 * 14 13 11 16 16 H 1.08009 * 120.00202 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00461 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99686 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00466 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47297 * 89.99852 * 19 17 15 21 21 H 1.48506 * 109.47309 * 210.00061 * 19 17 15 22 22 H 1.48503 * 109.47202 * 329.99555 * 19 17 15 23 23 C 1.39925 * 119.99750 * 5.18746 * 13 11 10 24 24 C 1.38874 * 120.07541 * 291.18861 * 23 13 11 25 25 C 1.38109 * 119.93266 * 179.74249 * 24 23 13 26 26 C 1.38287 * 120.07018 * 0.53963 * 25 24 23 27 27 C 1.38285 * 120.13875 * 359.73612 * 26 25 24 28 28 C 1.38111 * 120.07056 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.47089 * 59.97916 * 1 2 3 30 30 H 1.08997 * 109.47678 * 299.97164 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47169 * 120.00007 * 2 1 3 33 33 H 1.09005 * 109.47736 * 240.00263 * 2 1 3 34 34 H 1.08992 * 109.47125 * 305.94783 * 6 5 3 35 35 H 1.09002 * 109.46921 * 65.95483 * 6 5 3 36 36 H 1.09005 * 109.46428 * 185.94832 * 6 5 3 37 37 H 1.08999 * 109.47093 * 300.00396 * 10 9 7 38 38 H 1.09004 * 109.47221 * 60.00164 * 10 9 7 39 39 H 1.08996 * 109.47370 * 210.00372 * 14 13 11 40 40 H 1.09004 * 109.46867 * 330.00316 * 14 13 11 41 41 H 0.97006 * 120.00515 * 180.02562 * 18 17 15 42 42 H 1.08004 * 120.02953 * 0.02806 * 24 23 13 43 43 H 1.08002 * 119.96740 * 180.27351 * 25 24 23 44 44 H 1.07992 * 119.92901 * 179.72223 * 26 25 24 45 45 H 1.08000 * 119.96487 * 180.02562 * 27 26 25 46 46 H 1.08005 * 120.03378 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6089 1.9803 0.8445 5 8 1.6567 2.0832 -1.2185 6 6 0.6128 3.0470 -1.0650 7 6 3.5424 1.4442 0.1175 8 8 4.2190 1.8608 -0.7926 9 8 4.1288 0.9830 1.2333 10 6 5.5798 1.0143 1.2766 11 6 6.0551 0.4610 2.5954 12 8 5.2496 0.1052 3.4294 13 7 7.3752 0.3613 2.8479 14 6 7.8388 -0.2803 4.0806 15 6 8.0303 -1.7552 3.8379 16 1 7.8266 -2.1731 2.8630 17 6 8.4645 -2.5716 4.8606 18 7 8.7121 -2.0630 6.0479 19 14 8.7027 -4.3997 4.5596 20 1 10.0936 -4.6492 4.1035 21 1 8.4535 -5.1455 5.8194 22 1 7.7500 -4.8579 3.5166 23 6 8.3029 0.8706 1.9327 24 6 8.4650 0.2626 0.6947 25 6 9.3778 0.7709 -0.2085 26 6 10.1380 1.8775 0.1230 27 6 9.9831 2.4818 1.3572 28 6 9.0677 1.9819 2.2625 29 1 -0.3633 0.5142 -0.8898 30 1 -0.3634 0.5134 0.8902 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 -0.2392 2.5837 -0.5677 35 1 0.9745 3.8817 -0.4645 36 1 0.3072 3.4108 -2.0461 37 1 5.9807 0.4092 0.4635 38 1 5.9244 2.0427 1.1683 39 1 8.7859 0.1634 4.3872 40 1 7.0979 -0.1347 4.8668 41 1 9.0180 -2.6372 6.7675 42 1 7.8746 -0.6042 0.4367 43 1 9.5012 0.3012 -1.1732 44 1 10.8543 2.2704 -0.5832 45 1 10.5779 3.3462 1.6130 46 1 8.9469 2.4546 3.2261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062326455.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:31 Heat of formation + Delta-G solvation = -150.331476 kcal Electronic energy + Delta-G solvation = -29136.848574 eV Core-core repulsion = 24991.583227 eV Total energy + Delta-G solvation = -4145.265347 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.07939 -41.29573 -39.65186 -39.19591 -37.55767 -36.58376 -34.85285 -34.44029 -32.00016 -31.25391 -30.60548 -29.48977 -28.40611 -26.82869 -24.98064 -23.91425 -23.41562 -23.32499 -22.03647 -20.75403 -19.26753 -18.97649 -18.71135 -18.04238 -17.76617 -17.58429 -17.21044 -17.00341 -16.58090 -16.24771 -16.19357 -15.66625 -15.34342 -15.18227 -14.78054 -14.56323 -14.43802 -14.33574 -14.05009 -13.98450 -13.65448 -13.47723 -13.41561 -13.09047 -13.07571 -12.68256 -12.67196 -12.48200 -12.35060 -12.24489 -12.16115 -12.02381 -11.82084 -11.76651 -11.66644 -11.15629 -10.72638 -10.68455 -10.17412 -9.87422 -9.35305 -8.27655 -6.42452 0.29064 0.45709 0.89158 0.95123 1.34276 1.37408 1.40810 1.48929 2.09780 2.36481 2.79284 2.82743 3.02837 3.25460 3.40177 3.70613 3.73804 3.83139 3.87358 4.05056 4.07857 4.28646 4.28849 4.38114 4.50639 4.53541 4.55552 4.60353 4.66756 4.76862 4.83539 4.95363 5.04028 5.06740 5.08842 5.10859 5.12905 5.33829 5.34618 5.49316 5.58432 5.60604 5.68690 5.89423 5.95779 6.00611 6.43397 6.54734 6.63730 7.04264 7.28317 8.80167 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010085 B = 0.003492 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.746695 B = 8015.754830 C = 9885.865100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C 0.108 3.892 4 H 0.128 0.872 5 O -0.380 6.380 6 C 0.016 3.984 7 C 0.451 3.549 8 O -0.516 6.516 9 O -0.341 6.341 10 C 0.066 3.934 11 C 0.512 3.488 12 O -0.556 6.556 13 N -0.555 5.555 14 C 0.267 3.733 15 C -0.547 4.547 16 H 0.053 0.947 17 C 0.012 3.988 18 N -0.925 5.925 19 Si 0.968 3.032 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.271 1.271 23 C 0.113 3.887 24 C -0.139 4.139 25 C -0.104 4.104 26 C -0.117 4.117 27 C -0.103 4.103 28 C -0.136 4.136 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.027 0.973 40 H 0.011 0.989 41 H 0.269 0.731 42 H 0.115 0.885 43 H 0.153 0.847 44 H 0.161 0.839 45 H 0.156 0.844 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.170 10.808 -16.049 21.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C 0.049 3.951 4 H 0.145 0.855 5 O -0.298 6.298 6 C -0.079 4.079 7 C 0.293 3.707 8 O -0.403 6.403 9 O -0.257 6.257 10 C -0.011 4.011 11 C 0.300 3.700 12 O -0.434 6.434 13 N -0.283 5.283 14 C 0.147 3.853 15 C -0.585 4.585 16 H 0.072 0.928 17 C -0.187 4.187 18 N -0.564 5.564 19 Si 0.792 3.208 20 H -0.190 1.190 21 H -0.202 1.202 22 H -0.196 1.196 23 C 0.023 3.977 24 C -0.158 4.158 25 C -0.123 4.123 26 C -0.134 4.134 27 C -0.121 4.121 28 C -0.156 4.156 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.045 0.955 40 H 0.029 0.971 41 H 0.078 0.922 42 H 0.133 0.867 43 H 0.170 0.830 44 H 0.179 0.821 45 H 0.174 0.826 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.250 10.652 -15.823 21.199 hybrid contribution 0.341 -0.954 0.739 1.254 sum -8.909 9.698 -15.084 20.024 Atomic orbital electron populations 1.21769 0.92119 1.03471 1.02941 1.21924 0.99244 0.92400 1.03677 1.21710 0.84587 0.98061 0.90784 0.85500 1.87992 1.56567 1.56885 1.28385 1.23297 0.89320 0.90715 1.04599 1.24717 0.93471 0.73370 0.79109 1.90648 1.66203 1.43517 1.39946 1.86541 1.22083 1.76152 1.40884 1.22703 0.78250 1.04176 0.95975 1.20390 0.82334 0.78754 0.88521 1.90678 1.53916 1.49977 1.48831 1.45644 1.04004 1.56457 1.22197 1.18934 0.93859 0.91899 0.80566 1.21604 1.45867 0.93627 0.97426 0.92833 1.25817 0.94555 1.03914 0.94432 1.70038 1.45882 1.37791 1.02677 0.85405 0.78919 0.78612 0.77855 1.19013 1.20246 1.19607 1.18062 0.94424 0.94899 0.90362 1.21441 1.00755 0.99521 0.94114 1.21369 0.94609 0.96642 0.99631 1.21603 0.99359 0.95510 0.96964 1.21376 0.96845 1.00535 0.93349 1.21423 0.97856 0.95382 1.00897 0.91362 0.91193 0.91101 0.89987 0.91173 0.91077 0.93204 0.87517 0.87180 0.86991 0.95514 0.97079 0.92186 0.86697 0.82950 0.82137 0.82647 0.86303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.12 71.98 0.66 -1.31 16 2 C -0.13 -2.65 5.62 30.59 0.17 -2.48 16 3 C 0.11 2.37 2.77 29.85 0.08 2.45 16 4 H 0.13 2.13 7.65 -2.39 -0.02 2.12 16 5 O -0.38 -8.27 9.52 -129.95 -1.24 -9.50 16 6 C 0.02 0.20 10.33 113.37 1.17 1.37 16 7 C 0.45 13.61 7.29 71.24 0.52 14.13 16 8 O -0.52 -17.90 16.25 28.41 0.46 -17.44 16 9 O -0.34 -11.76 9.73 -45.07 -0.44 -12.19 16 10 C 0.07 2.33 4.58 71.24 0.33 2.66 16 11 C 0.51 23.04 7.66 87.66 0.67 23.71 16 12 O -0.56 -29.66 16.06 15.74 0.25 -29.40 16 13 N -0.55 -25.21 2.50 -635.32 -1.59 -26.80 16 14 C 0.27 14.69 5.15 85.63 0.44 15.13 16 15 C -0.55 -31.90 9.39 25.60 0.24 -31.66 16 16 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 17 C 0.01 0.72 5.46 84.65 0.46 1.18 16 18 N -0.92 -55.75 13.29 21.45 0.28 -55.46 16 19 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 23 C 0.11 4.19 4.51 38.15 0.17 4.36 16 24 C -0.14 -4.47 8.36 22.39 0.19 -4.28 16 25 C -0.10 -2.52 10.04 22.25 0.22 -2.30 16 26 C -0.12 -2.44 10.04 22.29 0.22 -2.21 16 27 C -0.10 -2.42 10.04 22.25 0.22 -2.20 16 28 C -0.14 -4.33 9.71 22.39 0.22 -4.11 16 29 H 0.07 0.82 6.79 -2.39 -0.02 0.80 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 1.79 8.12 -2.38 -0.02 1.78 16 33 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.07 0.60 6.71 -2.39 -0.02 0.59 16 35 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.11 3.64 6.55 -2.39 -0.02 3.63 16 38 H 0.11 3.57 8.07 -2.38 -0.02 3.55 16 39 H 0.03 1.51 7.88 -2.39 -0.02 1.49 16 40 H 0.01 0.69 7.36 -2.38 -0.02 0.67 16 41 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 42 H 0.11 3.80 7.60 -2.91 -0.02 3.77 16 43 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 44 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 45 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 46 H 0.12 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -78.79 394.05 6.72 -72.06 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.97 Total: 17.26 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: 5.99 Total: 14.44 kcal Atomic # 7 Polarization: -80.96 SS G_CDS: -1.30 Total: -82.26 kcal Atomic # 8 Polarization: -67.58 SS G_CDS: -0.96 Total: -68.54 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -78.79 6.72 -72.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062326455.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.268 kcal (2) G-P(sol) polarization free energy of solvation -78.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds