Wall clock time and date at job start Tue Mar 31 2020 19:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47231 * 2 1 4 4 O 1.42893 * 109.47142 * 120.00632 * 2 1 3 5 5 C 1.42901 * 114.00255 * 89.99620 * 4 2 1 6 6 C 1.50704 * 109.47084 * 179.97438 * 5 4 2 7 7 O 1.20823 * 120.00074 * 0.02562 * 6 5 4 8 8 O 1.34231 * 119.99756 * 179.97438 * 6 5 4 9 9 C 1.45200 * 116.99591 * 180.02562 * 8 6 5 10 10 C 1.50707 * 109.46740 * 180.02562 * 9 8 6 11 11 O 1.21285 * 120.00045 * 354.73123 * 10 9 8 12 12 N 1.34774 * 119.99689 * 174.72993 * 10 9 8 13 13 C 1.46504 * 119.99858 * 184.43211 * 12 10 9 14 14 C 1.50699 * 109.46734 * 269.99930 * 13 12 10 15 15 H 1.08005 * 120.00470 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99917 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00167 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00057 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46942 * 59.99925 * 18 16 14 20 20 H 1.48499 * 109.46875 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47191 * 299.99967 * 18 16 14 22 22 C 1.39930 * 120.00453 * 4.43062 * 12 10 9 23 23 C 1.38872 * 120.06914 * 66.70882 * 22 12 10 24 24 C 1.38109 * 119.92865 * 179.97438 * 23 22 12 25 25 C 1.38280 * 120.07275 * 359.97438 * 24 23 22 26 26 C 1.38289 * 120.13927 * 0.05171 * 25 24 23 27 27 C 1.38114 * 120.06901 * 359.94782 * 26 25 24 28 28 H 1.09008 * 109.47124 * 59.99739 * 1 2 3 29 29 H 1.08997 * 109.47509 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47384 * 300.00123 * 1 2 3 31 31 H 1.09005 * 109.46697 * 240.00084 * 2 1 3 32 32 H 1.09000 * 109.46971 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47721 * 299.99921 * 3 2 1 34 34 H 1.08999 * 109.46829 * 60.00597 * 3 2 1 35 35 H 1.09000 * 109.47224 * 60.00145 * 5 4 2 36 36 H 1.08999 * 109.47046 * 300.00025 * 5 4 2 37 37 H 1.08998 * 109.47229 * 60.00519 * 9 8 6 38 38 H 1.08998 * 109.47256 * 299.99981 * 9 8 6 39 39 H 1.08994 * 109.47395 * 29.99573 * 13 12 10 40 40 H 1.09001 * 109.47069 * 150.00532 * 13 12 10 41 41 H 0.96991 * 120.00637 * 180.02562 * 17 16 14 42 42 H 1.07999 * 120.03703 * 359.70435 * 23 22 12 43 43 H 1.07998 * 119.96629 * 179.97438 * 24 23 22 44 44 H 1.07997 * 119.93383 * 180.02562 * 25 24 23 45 45 H 1.07997 * 119.96184 * 179.97438 * 26 25 24 46 46 H 1.08001 * 120.03326 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1666 5 6 2.2000 -2.0783 0.9884 6 6 2.7013 -2.6834 2.2743 7 8 2.8746 -1.9838 3.2440 8 8 2.9545 -3.9999 2.3427 9 6 3.4344 -4.5137 3.6131 10 6 3.6625 -5.9991 3.5001 11 8 3.3527 -6.5847 2.4842 12 7 4.2109 -6.6767 4.5281 13 6 4.5222 -8.1009 4.3836 14 6 3.3311 -8.9210 4.8076 15 1 2.4323 -8.4304 5.1509 16 6 3.3892 -10.2977 4.7584 17 7 4.4839 -10.8952 4.3409 18 14 1.9130 -11.3143 5.2848 19 1 0.7474 -10.9736 4.4302 20 1 2.2286 -12.7579 5.1382 21 1 1.5895 -11.0194 6.7037 22 6 4.4828 -6.0199 5.7334 23 6 3.4398 -5.5464 6.5185 24 6 3.7115 -4.8991 7.7078 25 6 5.0205 -4.7226 8.1174 26 6 6.0613 -5.1925 7.3376 27 6 5.7963 -5.8407 6.1472 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8932 -0.5139 -0.8901 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 2.9318 -2.2468 0.1984 36 1 1.2536 -2.5434 0.7123 37 1 2.6932 -4.3175 4.3877 38 1 4.3713 -4.0214 3.8736 39 1 4.7598 -8.3171 3.3420 40 1 5.3777 -8.3513 5.0110 41 1 4.5247 -11.8636 4.3059 42 1 2.4174 -5.6804 6.1973 43 1 2.9009 -4.5302 8.3187 44 1 5.2303 -4.2165 9.0480 45 1 7.0825 -5.0528 7.6600 46 1 6.6096 -6.2078 5.5388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064276215.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:46 Heat of formation + Delta-G solvation = -131.547755 kcal Electronic energy + Delta-G solvation = -28560.720285 eV Core-core repulsion = 24416.269461 eV Total energy + Delta-G solvation = -4144.450824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.68596 -39.83372 -38.65208 -38.07668 -36.31884 -34.90738 -33.18268 -32.76215 -30.79406 -29.83881 -29.38502 -28.14394 -27.51691 -26.41933 -23.10798 -22.56965 -22.11978 -21.71788 -21.20851 -19.24923 -17.89217 -17.67874 -17.02651 -16.91313 -16.50880 -16.23397 -15.92871 -15.66578 -15.34361 -14.94094 -14.69260 -14.30198 -14.20879 -14.03423 -13.49318 -13.21244 -13.14618 -13.08740 -12.71311 -12.63355 -12.53917 -12.34178 -12.21594 -12.16384 -11.80286 -11.52461 -11.26203 -11.12046 -11.10639 -10.89416 -10.70157 -10.67335 -10.48804 -10.21787 -10.05349 -9.81679 -9.44471 -8.73211 -8.66733 -8.47925 -7.77644 -6.10062 -4.14693 1.49869 1.60283 2.03363 2.09495 3.06250 3.30533 3.34209 3.36414 3.43023 3.82419 3.97766 4.40633 4.47518 4.60217 4.66859 4.74136 4.79512 4.84298 4.88422 5.11400 5.14664 5.20858 5.23687 5.25220 5.26002 5.31834 5.33448 5.43276 5.47369 5.63336 5.77384 5.80912 5.85497 5.96038 6.21383 6.28608 6.55764 6.69309 6.71734 6.71883 6.88515 7.13581 7.25098 7.36073 7.67015 7.84694 8.11898 8.17249 8.69217 8.88787 9.49719 10.98401 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011415 B = 0.002866 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.348101 B = 9767.109178 C =11355.798234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.081 3.919 3 C -0.150 4.150 4 O -0.363 6.363 5 C 0.073 3.927 6 C 0.460 3.540 7 O -0.488 6.488 8 O -0.330 6.330 9 C 0.053 3.947 10 C 0.515 3.485 11 O -0.502 6.502 12 N -0.555 5.555 13 C 0.251 3.749 14 C -0.527 4.527 15 H 0.058 0.942 16 C 0.063 3.937 17 N -0.894 5.894 18 Si 0.900 3.100 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.276 1.276 22 C 0.153 3.847 23 C -0.127 4.127 24 C -0.107 4.107 25 C -0.131 4.131 26 C -0.108 4.108 27 C -0.122 4.122 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.049 0.951 40 H 0.039 0.961 41 H 0.265 0.735 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.989 21.026 -3.016 21.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.023 3.977 3 C -0.207 4.207 4 O -0.282 6.282 5 C -0.004 4.004 6 C 0.301 3.699 7 O -0.375 6.375 8 O -0.245 6.245 9 C -0.024 4.024 10 C 0.300 3.700 11 O -0.376 6.376 12 N -0.285 5.285 13 C 0.134 3.866 14 C -0.566 4.566 15 H 0.076 0.924 16 C -0.139 4.139 17 N -0.533 5.533 18 Si 0.727 3.273 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.202 1.202 22 C 0.061 3.939 23 C -0.146 4.146 24 C -0.126 4.126 25 C -0.150 4.150 26 C -0.127 4.127 27 C -0.142 4.142 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.141 0.859 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.978 20.755 -3.176 21.089 hybrid contribution -0.838 -0.895 0.376 1.283 sum -2.816 19.859 -2.800 20.252 Atomic orbital electron populations 1.22335 0.95611 1.02725 1.02897 1.22204 0.93942 0.93950 0.87570 1.21859 1.02027 0.94067 1.02724 1.88007 1.86832 1.17394 1.35978 1.21676 1.02480 0.83513 0.92759 1.23209 0.75433 0.80807 0.90422 1.90695 1.47266 1.61773 1.37721 1.86491 1.76574 1.24173 1.37280 1.22929 1.01738 0.93839 0.83938 1.19722 0.78850 0.87169 0.84220 1.90737 1.47911 1.69631 1.29341 1.45889 1.60612 1.12439 1.09513 1.19496 0.96834 0.71230 0.99087 1.21304 0.99772 0.91147 1.44386 0.92359 1.24905 0.96324 0.97615 0.95063 1.69906 1.26866 1.09920 1.46592 0.86526 0.82788 0.78887 0.79083 1.20081 1.21095 1.20178 1.17792 0.92812 0.95126 0.88177 1.21373 0.98886 0.99651 0.94716 1.20981 0.96801 0.98855 0.95933 1.21094 0.92826 1.01137 0.99902 1.20989 0.99140 0.98260 0.94316 1.21307 0.95870 0.99492 0.97550 0.91347 0.92215 0.91509 0.91600 0.91786 0.90980 0.91548 0.88606 0.88663 0.88241 0.88504 0.93317 0.94274 0.92532 0.85881 0.85964 0.86226 0.85928 0.85578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 9.53 37.16 0.35 -0.86 16 2 C 0.08 0.63 3.34 -26.74 -0.09 0.54 16 3 C -0.15 -1.00 9.56 37.16 0.36 -0.65 16 4 O -0.36 -4.13 9.52 -55.18 -0.53 -4.66 16 5 C 0.07 0.77 6.34 36.01 0.23 1.00 16 6 C 0.46 6.71 8.03 36.01 0.29 7.00 16 7 O -0.49 -8.37 16.25 -25.47 -0.41 -8.78 16 8 O -0.33 -5.45 9.76 -45.89 -0.45 -5.90 16 9 C 0.05 0.89 4.61 36.01 0.17 1.06 16 10 C 0.51 10.90 7.62 -10.98 -0.08 10.81 16 11 O -0.50 -12.61 16.13 -14.05 -0.23 -12.83 16 12 N -0.55 -11.90 2.51 -114.73 -0.29 -12.18 16 13 C 0.25 6.47 5.07 -5.19 -0.03 6.44 16 14 C -0.53 -14.86 9.39 -34.44 -0.32 -15.18 16 15 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 16 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 17 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 18 Si 0.90 21.84 29.54 -169.99 -5.02 16.81 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.15 2.77 4.43 -83.69 -0.37 2.40 16 23 C -0.13 -2.06 8.45 -39.39 -0.33 -2.39 16 24 C -0.11 -1.45 10.04 -39.61 -0.40 -1.84 16 25 C -0.13 -1.64 10.04 -39.55 -0.40 -2.04 16 26 C -0.11 -1.43 10.04 -39.61 -0.40 -1.83 16 27 C -0.12 -1.95 9.64 -39.39 -0.38 -2.33 16 28 H 0.07 0.35 8.14 -51.92 -0.42 -0.08 16 29 H 0.06 0.41 7.87 -51.93 -0.41 0.00 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.40 7.79 -51.93 -0.40 0.00 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.78 8.08 -51.93 -0.42 0.36 16 36 H 0.10 0.81 7.87 -51.93 -0.41 0.40 16 37 H 0.10 1.57 6.96 -51.93 -0.36 1.21 16 38 H 0.10 1.50 8.02 -51.93 -0.42 1.08 16 39 H 0.05 1.39 7.49 -51.93 -0.39 1.00 16 40 H 0.04 1.03 7.82 -51.93 -0.41 0.62 16 41 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.12 1.99 7.89 -52.49 -0.41 1.57 16 43 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 44 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 45 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 46 H 0.13 1.94 8.06 -52.49 -0.42 1.51 16 LS Contribution 398.76 15.07 6.01 6.01 Total: -1.00 -34.85 398.76 -8.66 -43.51 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.98 Total: -0.30 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -1.50 Total: 3.84 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.45 Total: -37.71 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -1.61 Total: -32.17 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.85 -8.66 -43.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064276215.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.036 kcal (2) G-P(sol) polarization free energy of solvation -34.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds