Wall clock time and date at job start Tue Mar 31 2020 18:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 116.99736 * 2 1 4 4 O 1.20823 * 120.00242 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99948 * 179.97438 * 3 2 1 6 6 N 1.46495 * 109.47632 * 180.02562 * 5 3 2 7 7 C 1.34783 * 119.99931 * 89.99890 * 6 5 3 8 8 O 1.21281 * 119.99796 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.99878 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.46970 * 180.02562 * 9 7 6 11 11 C 1.38328 * 119.96224 * 270.02075 * 10 9 7 12 12 C 1.38280 * 120.13484 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.07150 * 359.67534 * 12 11 10 14 14 C 1.38861 * 119.92830 * 0.59673 * 13 12 11 15 15 O 1.35751 * 120.06597 * 179.69892 * 14 13 12 16 16 C 1.34829 * 117.00376 * 354.17384 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38657 * 120.00083 * 185.03464 * 16 15 14 19 19 N 1.31555 * 119.99797 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99748 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47410 * 90.00109 * 20 18 16 22 22 H 1.48504 * 109.46801 * 209.99865 * 20 18 16 23 23 H 1.48497 * 109.47495 * 329.99577 * 20 18 16 24 24 C 1.38073 * 119.96952 * 89.99515 * 10 9 7 25 25 C 1.46503 * 120.00160 * 270.00577 * 6 5 3 26 26 C 1.52999 * 109.46670 * 299.99576 * 25 6 5 27 27 C 1.53000 * 109.47180 * 59.99268 * 25 6 5 28 28 H 1.09000 * 109.47245 * 59.99801 * 1 2 3 29 29 H 1.09008 * 109.47326 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47072 * 299.99612 * 1 2 3 31 31 H 1.09001 * 109.46916 * 59.99951 * 5 3 2 32 32 H 1.09005 * 109.47194 * 300.00806 * 5 3 2 33 33 H 1.08996 * 109.47386 * 59.99804 * 9 7 6 34 34 H 1.08997 * 109.47038 * 299.99640 * 9 7 6 35 35 H 1.08001 * 119.93314 * 359.97438 * 11 10 9 36 36 H 1.08007 * 119.96121 * 179.97438 * 12 11 10 37 37 H 1.08001 * 120.03709 * 180.32387 * 13 12 11 38 38 H 0.96998 * 119.99749 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.03594 * 0.04940 * 24 10 9 40 40 H 1.09003 * 109.46898 * 179.97438 * 25 6 5 41 41 H 1.08995 * 109.47420 * 59.99638 * 26 25 6 42 42 H 1.08995 * 109.46989 * 180.02562 * 26 25 6 43 43 H 1.09000 * 109.46915 * 299.99787 * 26 25 6 44 44 H 1.09006 * 109.46776 * 60.00060 * 27 25 6 45 45 H 1.08995 * 109.46558 * 180.02562 * 27 25 6 46 46 H 1.08995 * 109.46900 * 300.00356 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.1723 3.3257 1.1686 8 8 4.0004 2.7437 2.2187 9 6 4.5991 4.7710 1.1691 10 6 4.7417 5.2521 2.5901 11 6 3.6577 5.8117 3.2421 12 6 3.7847 6.2548 4.5458 13 6 4.9933 6.1337 5.2032 14 6 6.0849 5.5776 4.5495 15 8 7.2758 5.4629 5.1911 16 6 7.3664 6.0162 6.4172 17 1 6.4923 6.4505 6.8796 18 6 8.5817 6.0277 7.0846 19 7 8.6702 6.5681 8.2808 20 14 10.0937 5.2772 6.2845 21 1 10.8012 6.3150 5.4923 22 1 11.0015 4.7529 7.3362 23 1 9.6804 4.1671 5.3890 24 6 5.9541 5.1334 3.2400 25 6 4.1898 3.3825 -1.2674 26 6 5.2832 2.6741 -2.0695 27 6 2.8873 3.3824 -2.0702 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 3.9563 0.7806 -0.8892 32 1 3.9557 0.7808 0.8908 33 1 3.8486 5.3716 0.6553 34 1 5.5557 4.8675 0.6555 35 1 2.7103 5.9034 2.7316 36 1 2.9365 6.6917 5.0520 37 1 5.0904 6.4753 6.2232 38 1 9.5204 6.5758 8.7477 39 1 6.8003 4.6968 2.7303 40 1 4.4932 4.4103 -1.0678 41 1 4.9795 1.6465 -2.2690 42 1 5.4384 3.1972 -3.0130 43 1 6.2111 2.6741 -1.4975 44 1 2.1083 3.8872 -1.4987 45 1 3.0423 3.9050 -3.0141 46 1 2.5836 2.3549 -2.2697 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089769682.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:35 Heat of formation + Delta-G solvation = -136.058331 kcal Electronic energy + Delta-G solvation = -29060.255020 eV Core-core repulsion = 24915.608603 eV Total energy + Delta-G solvation = -4144.646417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.95770 -41.08798 -40.50731 -38.50220 -37.82735 -37.19166 -34.48593 -33.69599 -32.95269 -31.19204 -30.50129 -28.71603 -28.01968 -27.45349 -26.99110 -23.49874 -23.06722 -22.82749 -22.06724 -20.03884 -19.57448 -18.84063 -18.76903 -18.59449 -17.83652 -17.29270 -16.92838 -16.76758 -16.67742 -16.00818 -15.72696 -15.60108 -15.13279 -15.03859 -14.95734 -14.58202 -14.44204 -14.32753 -14.15945 -13.97824 -13.94131 -13.44088 -13.10141 -13.03996 -12.90589 -12.86245 -12.67163 -12.52056 -12.43553 -12.37968 -12.29866 -11.94132 -11.83502 -11.78046 -11.59059 -11.31504 -11.00558 -10.89316 -9.93175 -9.69046 -9.08409 -8.49970 -6.23037 0.45425 0.67818 1.11894 1.30556 1.30967 1.35650 1.52257 1.71931 2.12370 2.28621 2.75708 3.02881 3.10284 3.59665 3.70347 3.80599 3.90691 4.04444 4.12315 4.20068 4.26319 4.27366 4.29239 4.33844 4.35463 4.40185 4.52194 4.57181 4.66303 4.68256 4.74579 4.79602 4.92103 5.00060 5.06295 5.22108 5.23816 5.34749 5.38297 5.44360 5.49609 5.62624 5.70454 5.75437 5.89911 6.19023 6.27854 6.67671 6.84107 7.09636 7.58198 8.61917 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016423 B = 0.002639 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.491214 B =10608.181393 C =10967.306592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.441 3.559 4 O -0.522 6.522 5 C 0.119 3.881 6 N -0.592 5.592 7 C 0.520 3.480 8 O -0.571 6.571 9 C -0.089 4.089 10 C -0.028 4.028 11 C -0.174 4.174 12 C -0.078 4.078 13 C -0.239 4.239 14 C 0.121 3.879 15 O -0.244 6.244 16 C -0.401 4.401 17 H 0.079 0.921 18 C 0.009 3.991 19 N -0.924 5.924 20 Si 0.973 3.027 21 H -0.261 1.261 22 H -0.267 1.267 23 H -0.265 1.265 24 C -0.176 4.176 25 C 0.120 3.880 26 C -0.162 4.162 27 C -0.154 4.154 28 H 0.067 0.933 29 H 0.131 0.869 30 H 0.050 0.950 31 H 0.158 0.842 32 H 0.116 0.884 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.108 0.892 38 H 0.285 0.715 39 H 0.127 0.873 40 H 0.115 0.885 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.089 0.911 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.104 -10.928 -28.508 32.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.281 6.281 3 C 0.284 3.716 4 O -0.411 6.411 5 C -0.005 4.005 6 N -0.326 5.326 7 C 0.310 3.690 8 O -0.449 6.449 9 C -0.128 4.128 10 C -0.029 4.029 11 C -0.192 4.192 12 C -0.096 4.096 13 C -0.258 4.258 14 C 0.072 3.928 15 O -0.152 6.152 16 C -0.477 4.477 17 H 0.096 0.904 18 C -0.189 4.189 19 N -0.565 5.565 20 Si 0.795 3.205 21 H -0.186 1.186 22 H -0.192 1.192 23 H -0.189 1.189 24 C -0.195 4.195 25 C 0.019 3.981 26 C -0.220 4.220 27 C -0.212 4.212 28 H 0.085 0.915 29 H 0.149 0.851 30 H 0.069 0.931 31 H 0.176 0.824 32 H 0.134 0.866 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.126 0.874 38 H 0.095 0.905 39 H 0.145 0.855 40 H 0.132 0.868 41 H 0.085 0.915 42 H 0.110 0.890 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.108 0.892 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.099 -10.993 -27.854 32.296 hybrid contribution -0.003 0.049 0.975 0.976 sum -12.101 -10.945 -26.879 31.444 Atomic orbital electron populations 1.23490 0.74992 1.05563 1.02180 1.86489 1.24848 1.32907 1.83893 1.24811 0.93531 0.81506 0.71793 1.90649 1.67615 1.37095 1.45695 1.21005 0.86095 0.85117 1.08319 1.47913 1.66813 1.10899 1.06951 1.21030 0.75631 0.89487 0.82819 1.90754 1.52115 1.69143 1.32911 1.20739 1.06407 0.91660 0.93964 1.19177 0.91924 0.96322 0.95471 1.20955 0.98873 1.04120 0.95264 1.21072 0.95959 0.97574 0.94989 1.21315 0.94698 1.08545 1.01282 1.19565 0.85512 0.95150 0.92541 1.83503 1.30802 1.70440 1.30463 1.20710 0.98446 1.37686 0.90840 0.90390 1.25306 1.01121 0.96790 0.95701 1.69734 1.28307 1.44916 1.13583 0.85192 0.77470 0.79452 0.78435 1.18579 1.19152 1.18939 1.20248 0.99522 1.07672 0.92083 1.21646 0.96611 0.97983 0.81901 1.22194 0.97483 1.01513 1.00814 1.22149 0.96476 1.02001 1.00598 0.91473 0.85073 0.93131 0.82427 0.86599 0.84826 0.84820 0.84360 0.84415 0.87416 0.90550 0.85495 0.86762 0.91516 0.89025 0.92004 0.93370 0.89210 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.62 16 2 O -0.37 -6.76 10.57 -51.37 -0.54 -7.30 16 3 C 0.44 9.33 6.97 71.23 0.50 9.82 16 4 O -0.52 -13.79 13.91 21.97 0.31 -13.48 16 5 C 0.12 2.02 5.43 85.63 0.47 2.48 16 6 N -0.59 -10.92 1.96 -802.14 -1.57 -12.49 16 7 C 0.52 13.83 7.67 87.66 0.67 14.50 16 8 O -0.57 -21.40 15.61 -3.03 -0.05 -21.45 16 9 C -0.09 -1.99 4.14 29.10 0.12 -1.87 16 10 C -0.03 -0.95 4.37 -19.88 -0.09 -1.04 16 11 C -0.17 -5.92 9.70 22.30 0.22 -5.71 16 12 C -0.08 -3.00 10.04 22.25 0.22 -2.78 16 13 C -0.24 -11.41 9.17 22.39 0.21 -11.20 16 14 C 0.12 6.07 6.65 22.58 0.15 6.22 16 15 O -0.24 -13.93 8.59 -22.74 -0.20 -14.12 16 16 C -0.40 -24.59 9.95 67.92 0.68 -23.92 16 17 H 0.08 5.04 5.44 -2.91 -0.02 5.02 16 18 C 0.01 0.53 5.49 84.83 0.47 1.00 16 19 N -0.92 -56.70 13.96 21.61 0.30 -56.40 16 20 Si 0.97 46.59 28.62 68.60 1.96 48.55 16 21 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 24 C -0.18 -7.23 9.64 22.39 0.22 -7.02 16 25 C 0.12 1.31 3.17 44.99 0.14 1.45 16 26 C -0.16 -1.06 9.17 71.98 0.66 -0.40 16 27 C -0.15 -1.75 7.91 71.98 0.57 -1.18 16 28 H 0.07 0.83 8.13 -2.39 -0.02 0.81 16 29 H 0.13 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.05 0.82 8.13 -2.38 -0.02 0.80 16 31 H 0.16 1.34 6.43 -2.39 -0.02 1.33 16 32 H 0.12 2.29 7.42 -2.38 -0.02 2.27 16 33 H 0.13 2.19 7.73 -2.39 -0.02 2.17 16 34 H 0.13 2.18 7.73 -2.39 -0.02 2.16 16 35 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 36 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 37 H 0.11 5.58 5.64 -2.91 -0.02 5.56 16 38 H 0.28 15.96 8.31 -92.71 -0.77 15.19 16 39 H 0.13 4.77 8.06 -2.91 -0.02 4.74 16 40 H 0.11 0.97 5.77 -2.39 -0.01 0.95 16 41 H 0.07 0.35 6.66 -2.39 -0.02 0.33 16 42 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.05 0.81 7.19 -2.38 -0.02 0.79 16 45 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.05 0.56 6.88 -2.39 -0.02 0.54 16 Total: -1.00 -83.53 382.76 7.60 -75.94 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 1.00 Total: 18.76 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: 6.39 Total: -18.01 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -1.27 Total: -68.89 kcal Atomic # 8 Polarization: -55.87 SS G_CDS: -0.48 Total: -56.35 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.96 Total: 48.55 kcal Total: -83.53 7.60 -75.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089769682.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.120 kcal (2) G-P(sol) polarization free energy of solvation -83.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds