Wall clock time and date at job start Tue Mar 31 2020 18:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46555 * 2 1 4 4 N 1.46500 * 109.46707 * 180.02562 * 3 2 1 5 5 C 1.46500 * 119.99836 * 269.99703 * 4 3 2 6 6 C 1.50697 * 109.47470 * 270.00393 * 5 4 3 7 7 O 1.20827 * 119.99548 * 359.97438 * 6 5 4 8 8 O 1.34223 * 120.00014 * 180.02562 * 6 5 4 9 9 C 1.45204 * 116.99678 * 179.97438 * 8 6 5 10 10 C 1.34774 * 120.00045 * 89.99957 * 4 3 2 11 11 O 1.21282 * 120.00304 * 179.97438 * 10 4 3 12 12 C 1.50704 * 120.00135 * 359.97438 * 10 4 3 13 13 C 1.50699 * 109.47208 * 180.02562 * 12 10 4 14 14 C 1.38328 * 119.96230 * 269.97915 * 13 12 10 15 15 C 1.38281 * 120.13505 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47063 * 60.00398 * 23 21 19 25 25 H 1.48498 * 109.47240 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47319 * 300.00306 * 23 21 19 27 27 C 1.38073 * 119.96534 * 89.99715 * 13 12 10 28 28 H 1.09005 * 109.46555 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47252 * 299.99395 * 1 2 3 30 30 H 1.08997 * 109.47302 * 60.00025 * 1 2 3 31 31 H 1.08993 * 109.47077 * 240.00163 * 2 1 3 32 32 H 1.08997 * 109.47302 * 119.99975 * 2 1 3 33 33 H 1.08998 * 109.46846 * 60.00356 * 3 2 1 34 34 H 1.08997 * 109.47295 * 299.99980 * 3 2 1 35 35 H 1.09006 * 109.46954 * 30.00438 * 5 4 3 36 36 H 1.09003 * 109.47215 * 149.99975 * 5 4 3 37 37 H 1.09009 * 109.47085 * 179.97438 * 9 8 6 38 38 H 1.08997 * 109.47160 * 299.99707 * 9 8 6 39 39 H 1.09000 * 109.47224 * 60.00053 * 9 8 6 40 40 H 1.09002 * 109.46571 * 59.99894 * 12 10 4 41 41 H 1.08992 * 109.46782 * 300.00158 * 12 10 4 42 42 H 1.08001 * 119.93314 * 0.02562 * 14 13 12 43 43 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 44 44 H 1.08001 * 120.03256 * 180.31909 * 16 15 14 45 45 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 46 46 H 1.07996 * 120.03547 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.2379 1.4426 1.2678 6 6 4.4892 2.8633 1.7030 7 8 4.0967 3.7817 1.0231 8 8 5.1499 3.1084 2.8454 9 6 5.3562 4.5008 3.2017 10 6 4.1783 1.4428 -1.1681 11 8 5.3911 1.4433 -1.1686 12 6 3.4243 1.4424 -2.4729 13 6 4.4031 1.4421 -3.6187 14 6 4.8515 2.6404 -4.1447 15 6 5.7492 2.6442 -5.1964 16 6 6.2060 1.4508 -5.7207 17 6 5.7535 0.2464 -5.1988 18 8 6.1960 -0.9282 -5.7159 19 6 6.9787 -0.8583 -6.8115 20 1 7.2936 0.1030 -7.1898 21 6 7.3794 -2.0208 -7.4524 22 7 6.9955 -3.1917 -6.9919 23 14 8.4633 -1.9240 -8.9708 24 1 9.7389 -1.2464 -8.6259 25 1 8.7483 -3.2954 -9.4638 26 1 7.7640 -1.1531 -10.0299 27 6 4.8511 0.2458 -4.1427 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.6491 0.9285 2.0277 36 1 5.1903 0.9287 1.1371 37 1 5.9008 4.5577 4.1443 38 1 5.9317 4.9948 2.4189 39 1 4.3908 4.9951 3.3099 40 1 2.7973 2.3322 -2.5304 41 1 2.7980 0.5522 -2.5303 42 1 4.4997 3.5748 -3.7330 43 1 6.0971 3.5813 -5.6052 44 1 6.9111 1.4545 -6.5388 45 1 7.2756 -4.0048 -7.4405 46 1 4.5001 -0.6894 -3.7321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090011582.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:39 Heat of formation + Delta-G solvation = -121.901837 kcal Electronic energy + Delta-G solvation = -28663.169749 eV Core-core repulsion = 24519.137204 eV Total energy + Delta-G solvation = -4144.032546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.91715 -39.84036 -38.78755 -36.92263 -36.40992 -36.16363 -33.30488 -32.36986 -31.99843 -29.85201 -29.06304 -27.66880 -26.85977 -25.79727 -25.10478 -22.15817 -21.92240 -21.51850 -20.75348 -19.21729 -17.98964 -17.60670 -17.41263 -17.07535 -16.79714 -16.44748 -16.02088 -15.27801 -14.94795 -14.91476 -14.37159 -14.34402 -13.98650 -13.80450 -13.72553 -13.58292 -13.39057 -13.20635 -12.61305 -12.51156 -12.44291 -12.37333 -12.30938 -11.91478 -11.86830 -11.65842 -11.49691 -11.20414 -11.05679 -10.98606 -10.83369 -10.77383 -10.70888 -10.55094 -10.41102 -9.79450 -9.27564 -8.99710 -8.77140 -7.99817 -7.14528 -6.38060 -3.96939 1.97900 2.05587 2.27454 2.46871 2.74043 3.01676 3.17522 3.18852 3.21074 4.02259 4.37633 4.48782 4.56939 4.66905 4.74701 4.83035 4.88438 4.92000 4.99348 5.03754 5.08191 5.16243 5.17439 5.24563 5.32030 5.33506 5.48223 5.53152 5.70066 5.74069 5.78067 5.82193 5.98339 6.01715 6.09029 6.20274 6.25080 6.40773 6.72212 6.98729 7.13923 7.15836 7.33937 7.44407 7.50773 7.51439 7.89950 8.07174 8.18244 9.07774 9.79154 10.80293 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014424 B = 0.002557 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.765895 B =10947.528629 C =11770.727748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.147 4.147 3 C 0.111 3.889 4 N -0.608 5.608 5 C 0.125 3.875 6 C 0.443 3.557 7 O -0.497 6.497 8 O -0.362 6.362 9 C 0.037 3.963 10 C 0.524 3.476 11 O -0.512 6.512 12 C -0.090 4.090 13 C -0.035 4.035 14 C -0.195 4.195 15 C -0.075 4.075 16 C -0.230 4.230 17 C 0.154 3.846 18 O -0.180 6.180 19 C -0.390 4.390 20 H 0.090 0.910 21 C 0.039 3.961 22 N -0.865 5.865 23 Si 0.940 3.060 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.173 4.173 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.120 0.880 36 H 0.128 0.872 37 H 0.101 0.899 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.126 0.874 45 H 0.269 0.731 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.688 10.129 18.865 24.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.186 4.186 3 C -0.012 4.012 4 N -0.343 5.343 5 C 0.000 4.000 6 C 0.283 3.717 7 O -0.383 6.383 8 O -0.278 6.278 9 C -0.057 4.057 10 C 0.313 3.687 11 O -0.384 6.384 12 C -0.129 4.129 13 C -0.035 4.035 14 C -0.214 4.214 15 C -0.093 4.093 16 C -0.249 4.249 17 C 0.101 3.899 18 O -0.084 6.084 19 C -0.467 4.467 20 H 0.108 0.892 21 C -0.165 4.165 22 N -0.501 5.501 23 Si 0.765 3.235 24 H -0.196 1.196 25 H -0.203 1.203 26 H -0.196 1.196 27 C -0.193 4.193 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.138 0.862 36 H 0.146 0.854 37 H 0.119 0.881 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.144 0.856 45 H 0.079 0.921 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.111 9.953 18.651 23.882 hybrid contribution 0.568 0.443 -0.654 0.972 sum -10.544 10.396 17.997 23.305 Atomic orbital electron populations 1.21702 0.94840 1.02255 1.02023 1.22023 0.96410 0.96786 1.03340 1.21733 0.78396 0.97157 1.03902 1.47757 1.06906 1.75184 1.04426 1.20830 1.01625 0.89986 0.87558 1.24583 0.74675 0.93825 0.78610 1.90673 1.47812 1.46625 1.53201 1.86494 1.69709 1.31008 1.40564 1.23252 1.02022 0.79039 1.01421 1.20874 0.88218 0.74758 0.84879 1.90761 1.13901 1.46935 1.86853 1.20626 0.97798 1.04538 0.89942 1.18670 0.97050 0.93162 0.94659 1.20369 1.03953 0.96102 1.00941 1.20676 0.96162 0.96815 0.95662 1.21173 1.06364 0.92127 1.05269 1.19265 0.91624 0.86568 0.92421 1.83974 1.58930 1.24706 1.40754 1.21265 1.27435 0.94623 1.03366 0.89215 1.25259 0.98063 0.94202 0.98981 1.70028 1.43055 0.97410 1.39586 0.85800 0.79705 0.77810 0.80215 1.19551 1.20328 1.19552 1.19926 1.02265 0.97098 0.99977 0.92206 0.92695 0.92254 0.90935 0.91458 0.90463 0.89537 0.86242 0.85432 0.88071 0.91830 0.92028 0.88222 0.88077 0.87958 0.87498 0.85631 0.92082 0.86833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.15 -1.01 6.26 -26.72 -0.17 -1.18 16 3 C 0.11 0.87 5.21 -4.04 -0.02 0.85 16 4 N -0.61 -6.85 1.96 -175.05 -0.34 -7.19 16 5 C 0.13 1.23 6.00 -5.19 -0.03 1.20 16 6 C 0.44 5.24 8.02 36.00 0.29 5.53 16 7 O -0.50 -7.38 16.18 -18.75 -0.30 -7.69 16 8 O -0.36 -3.74 10.57 -39.24 -0.41 -4.16 16 9 C 0.04 0.29 10.56 101.05 1.07 1.35 16 10 C 0.52 8.03 7.67 -10.98 -0.08 7.95 16 11 O -0.51 -10.22 15.61 5.56 0.09 -10.13 16 12 C -0.09 -1.27 4.38 -29.03 -0.13 -1.40 16 13 C -0.03 -0.66 4.37 -104.65 -0.46 -1.12 16 14 C -0.19 -3.72 9.70 -39.53 -0.38 -4.10 16 15 C -0.07 -1.50 10.04 -39.61 -0.40 -1.90 16 16 C -0.23 -5.33 9.17 -39.40 -0.36 -5.69 16 17 C 0.15 3.93 6.65 -39.11 -0.26 3.67 16 18 O -0.18 -5.32 9.76 0.05 0.00 -5.32 16 19 C -0.39 -11.26 9.49 30.89 0.29 -10.97 16 20 H 0.09 2.40 5.21 -52.49 -0.27 2.13 16 21 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 22 N -0.87 -25.91 13.67 55.48 0.76 -25.15 16 23 Si 0.94 21.04 29.55 -169.99 -5.02 16.02 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 27 C -0.17 -3.87 9.65 -39.39 -0.38 -4.25 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.59 7.22 -51.93 -0.37 0.22 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.51 8.07 -51.93 -0.42 0.10 16 34 H 0.09 0.65 6.44 -51.93 -0.33 0.32 16 35 H 0.12 0.70 8.07 -51.93 -0.42 0.28 16 36 H 0.13 1.37 7.42 -51.93 -0.39 0.98 16 37 H 0.10 0.49 8.14 -51.92 -0.42 0.07 16 38 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 39 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 40 H 0.10 1.17 7.34 -51.93 -0.38 0.79 16 41 H 0.10 1.20 7.13 -51.93 -0.37 0.83 16 42 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 43 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 44 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 45 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.11 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 393.18 15.07 5.93 5.93 Total: -1.00 -37.25 393.18 -6.68 -43.93 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -6.62 Total: 3.28 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -0.75 Total: -9.52 kcal Atomic # 7 Polarization: -32.76 SS G_CDS: 0.42 Total: -32.35 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.63 Total: -27.29 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.25 -6.68 -43.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090011582.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.970 kcal (2) G-P(sol) polarization free energy of solvation -37.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds