Wall clock time and date at job start Tue Mar 31 2020 18:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46555 * 2 1 4 4 N 1.46500 * 109.46707 * 180.02562 * 3 2 1 5 5 C 1.46500 * 119.99836 * 269.99703 * 4 3 2 6 6 C 1.50697 * 109.47470 * 270.00393 * 5 4 3 7 7 O 1.20827 * 119.99548 * 359.97438 * 6 5 4 8 8 O 1.34223 * 120.00014 * 180.02562 * 6 5 4 9 9 C 1.45204 * 116.99678 * 179.97438 * 8 6 5 10 10 C 1.34774 * 120.00045 * 89.99957 * 4 3 2 11 11 O 1.21282 * 120.00304 * 179.97438 * 10 4 3 12 12 C 1.50704 * 120.00135 * 359.97438 * 10 4 3 13 13 C 1.50699 * 109.47208 * 180.02562 * 12 10 4 14 14 C 1.38328 * 119.96230 * 269.97915 * 13 12 10 15 15 C 1.38281 * 120.13505 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47063 * 60.00398 * 23 21 19 25 25 H 1.48498 * 109.47240 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47319 * 300.00306 * 23 21 19 27 27 C 1.38073 * 119.96534 * 89.99715 * 13 12 10 28 28 H 1.09005 * 109.46555 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47252 * 299.99395 * 1 2 3 30 30 H 1.08997 * 109.47302 * 60.00025 * 1 2 3 31 31 H 1.08993 * 109.47077 * 240.00163 * 2 1 3 32 32 H 1.08997 * 109.47302 * 119.99975 * 2 1 3 33 33 H 1.08998 * 109.46846 * 60.00356 * 3 2 1 34 34 H 1.08997 * 109.47295 * 299.99980 * 3 2 1 35 35 H 1.09006 * 109.46954 * 30.00438 * 5 4 3 36 36 H 1.09003 * 109.47215 * 149.99975 * 5 4 3 37 37 H 1.09009 * 109.47085 * 179.97438 * 9 8 6 38 38 H 1.08997 * 109.47160 * 299.99707 * 9 8 6 39 39 H 1.09000 * 109.47224 * 60.00053 * 9 8 6 40 40 H 1.09002 * 109.46571 * 59.99894 * 12 10 4 41 41 H 1.08992 * 109.46782 * 300.00158 * 12 10 4 42 42 H 1.08001 * 119.93314 * 0.02562 * 14 13 12 43 43 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 44 44 H 1.08001 * 120.03256 * 180.31909 * 16 15 14 45 45 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 46 46 H 1.07996 * 120.03547 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.2379 1.4426 1.2678 6 6 4.4892 2.8633 1.7030 7 8 4.0967 3.7817 1.0231 8 8 5.1499 3.1084 2.8454 9 6 5.3562 4.5008 3.2017 10 6 4.1783 1.4428 -1.1681 11 8 5.3911 1.4433 -1.1686 12 6 3.4243 1.4424 -2.4729 13 6 4.4031 1.4421 -3.6187 14 6 4.8515 2.6404 -4.1447 15 6 5.7492 2.6442 -5.1964 16 6 6.2060 1.4508 -5.7207 17 6 5.7535 0.2464 -5.1988 18 8 6.1960 -0.9282 -5.7159 19 6 6.9787 -0.8583 -6.8115 20 1 7.2936 0.1030 -7.1898 21 6 7.3794 -2.0208 -7.4524 22 7 6.9955 -3.1917 -6.9919 23 14 8.4633 -1.9240 -8.9708 24 1 9.7389 -1.2464 -8.6259 25 1 8.7483 -3.2954 -9.4638 26 1 7.7640 -1.1531 -10.0299 27 6 4.8511 0.2458 -4.1427 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.6491 0.9285 2.0277 36 1 5.1903 0.9287 1.1371 37 1 5.9008 4.5577 4.1443 38 1 5.9317 4.9948 2.4189 39 1 4.3908 4.9951 3.3099 40 1 2.7973 2.3322 -2.5304 41 1 2.7980 0.5522 -2.5303 42 1 4.4997 3.5748 -3.7330 43 1 6.0971 3.5813 -5.6052 44 1 6.9111 1.4545 -6.5388 45 1 7.2756 -4.0048 -7.4405 46 1 4.5001 -0.6894 -3.7321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090011582.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:39 Heat of formation + Delta-G solvation = -145.177047 kcal Electronic energy + Delta-G solvation = -28664.179038 eV Core-core repulsion = 24519.137204 eV Total energy + Delta-G solvation = -4145.041834 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.87503 -41.05242 -40.42977 -38.32819 -37.67572 -37.13144 -34.36002 -34.01903 -33.49293 -31.07433 -30.53567 -28.71814 -27.77245 -27.27166 -26.53767 -23.38599 -23.05530 -22.64180 -22.17173 -20.32799 -19.43599 -18.85538 -18.75770 -18.42490 -17.84730 -17.31534 -17.04176 -16.72865 -16.57300 -16.09959 -15.79858 -15.56538 -15.51510 -15.05668 -14.88203 -14.57212 -14.51336 -14.29508 -14.15765 -13.97750 -13.59735 -13.24761 -13.04303 -13.03534 -12.96177 -12.85592 -12.64527 -12.46954 -12.36465 -12.26269 -12.18435 -12.12987 -11.84808 -11.75684 -11.54340 -11.21505 -11.02965 -10.78976 -9.92293 -9.65783 -8.99356 -8.46537 -6.15102 0.49142 0.73874 1.08183 1.29787 1.34243 1.45416 1.50761 1.68119 2.13091 2.18283 2.82068 3.14564 3.41591 3.60293 3.73705 3.84650 3.97638 4.06445 4.12830 4.17220 4.26768 4.28804 4.29511 4.34846 4.37583 4.49592 4.55092 4.56096 4.57199 4.67128 4.71829 4.78249 4.99596 5.04343 5.12554 5.16781 5.28462 5.29640 5.30917 5.41396 5.54000 5.63141 5.71172 5.73665 6.02694 6.14008 6.25225 6.63655 6.97814 7.07064 7.78718 8.76745 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014424 B = 0.002557 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.765895 B =10947.528629 C =11770.727748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.143 4.143 3 C 0.106 3.894 4 N -0.598 5.598 5 C 0.121 3.879 6 C 0.444 3.556 7 O -0.532 6.532 8 O -0.363 6.363 9 C 0.030 3.970 10 C 0.521 3.479 11 O -0.571 6.571 12 C -0.088 4.088 13 C -0.026 4.026 14 C -0.184 4.184 15 C -0.073 4.073 16 C -0.245 4.245 17 C 0.114 3.886 18 O -0.232 6.232 19 C -0.416 4.416 20 H 0.100 0.900 21 C -0.023 4.023 22 N -0.921 5.921 23 Si 1.019 2.981 24 H -0.259 1.259 25 H -0.270 1.270 26 H -0.256 1.256 27 C -0.188 4.188 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.165 0.835 36 H 0.117 0.883 37 H 0.133 0.867 38 H 0.050 0.950 39 H 0.067 0.933 40 H 0.135 0.865 41 H 0.125 0.875 42 H 0.138 0.862 43 H 0.144 0.856 44 H 0.119 0.881 45 H 0.273 0.727 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.200 12.383 20.212 27.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C -0.016 4.016 4 N -0.331 5.331 5 C -0.004 4.004 6 C 0.286 3.714 7 O -0.420 6.420 8 O -0.279 6.279 9 C -0.063 4.063 10 C 0.311 3.689 11 O -0.449 6.449 12 C -0.127 4.127 13 C -0.027 4.027 14 C -0.202 4.202 15 C -0.091 4.091 16 C -0.265 4.265 17 C 0.064 3.936 18 O -0.139 6.139 19 C -0.492 4.492 20 H 0.117 0.883 21 C -0.220 4.220 22 N -0.559 5.559 23 Si 0.838 3.162 24 H -0.184 1.184 25 H -0.194 1.194 26 H -0.180 1.180 27 C -0.207 4.207 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.183 0.817 36 H 0.135 0.865 37 H 0.151 0.849 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.153 0.847 41 H 0.142 0.858 42 H 0.156 0.844 43 H 0.162 0.838 44 H 0.137 0.863 45 H 0.082 0.918 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.688 12.250 20.065 26.714 hybrid contribution 0.869 -0.025 -0.780 1.168 sum -11.819 12.224 19.285 25.711 Atomic orbital electron populations 1.21685 0.93714 1.02428 1.02755 1.21972 0.97268 0.95905 1.02975 1.22022 0.76057 0.98132 1.05349 1.47765 1.08324 1.73196 1.03816 1.21105 1.02027 0.89330 0.87913 1.24879 0.73929 0.94066 0.78491 1.90652 1.49455 1.47716 1.54224 1.86491 1.69082 1.32484 1.39820 1.23518 1.02686 0.77736 1.02402 1.20991 0.87533 0.74172 0.86220 1.90746 1.16221 1.50123 1.87777 1.20729 0.96933 1.07435 0.87617 1.19154 0.96605 0.91857 0.95092 1.20922 1.02197 0.97505 0.99586 1.21096 0.95579 0.96974 0.95462 1.21292 1.06838 0.92696 1.05642 1.19845 0.93282 0.86578 0.93885 1.83935 1.60893 1.26975 1.42053 1.21783 1.27985 0.95550 1.03858 0.88317 1.26592 0.99487 0.93407 1.02496 1.70177 1.45499 0.98368 1.41889 0.84653 0.77628 0.78381 0.75560 1.18390 1.19398 1.18022 1.20178 1.02298 0.98597 0.99641 0.92361 0.91463 0.92055 0.92466 0.90796 0.88483 0.88733 0.81720 0.86547 0.84900 0.93107 0.91397 0.84715 0.85755 0.84386 0.83849 0.86290 0.91806 0.87206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 71.98 0.71 -0.54 16 2 C -0.14 -1.57 6.26 30.60 0.19 -1.38 16 3 C 0.11 1.31 5.21 86.38 0.45 1.76 16 4 N -0.60 -12.13 1.96 -826.14 -1.62 -13.75 16 5 C 0.12 2.14 6.00 85.63 0.51 2.65 16 6 C 0.44 9.78 8.02 71.24 0.57 10.35 16 7 O -0.53 -14.97 16.18 21.96 0.36 -14.61 16 8 O -0.36 -6.88 10.57 -51.35 -0.54 -7.43 16 9 C 0.03 0.42 10.56 113.37 1.20 1.61 16 10 C 0.52 15.23 7.67 87.66 0.67 15.90 16 11 O -0.57 -22.81 15.61 -3.04 -0.05 -22.86 16 12 C -0.09 -2.29 4.38 29.10 0.13 -2.16 16 13 C -0.03 -0.98 4.37 -19.88 -0.09 -1.06 16 14 C -0.18 -6.55 9.70 22.30 0.22 -6.33 16 15 C -0.07 -2.81 10.04 22.25 0.22 -2.59 16 16 C -0.25 -11.63 9.17 22.39 0.21 -11.42 16 17 C 0.11 6.11 6.65 22.58 0.15 6.26 16 18 O -0.23 -14.64 9.76 -22.74 -0.22 -14.86 16 19 C -0.42 -25.26 9.49 67.92 0.64 -24.61 16 20 H 0.10 5.54 5.21 -2.91 -0.02 5.52 16 21 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 22 N -0.92 -57.99 13.67 21.61 0.30 -57.69 16 23 Si 1.02 44.20 29.55 68.60 2.03 46.23 16 24 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 27 C -0.19 -8.64 9.65 22.39 0.22 -8.43 16 28 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.82 7.22 -2.39 -0.02 0.80 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.10 0.89 8.07 -2.39 -0.02 0.88 16 34 H 0.09 1.05 6.44 -2.39 -0.02 1.04 16 35 H 0.17 1.34 8.07 -2.38 -0.02 1.33 16 36 H 0.12 2.42 7.42 -2.39 -0.02 2.40 16 37 H 0.13 0.95 8.14 -2.38 -0.02 0.93 16 38 H 0.05 0.84 8.13 -2.39 -0.02 0.82 16 39 H 0.07 0.86 8.13 -2.39 -0.02 0.84 16 40 H 0.14 2.57 7.34 -2.39 -0.02 2.56 16 41 H 0.12 2.67 7.13 -2.39 -0.02 2.65 16 42 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 43 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 44 H 0.12 5.66 5.64 -2.91 -0.02 5.64 16 45 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 46 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -87.84 393.18 7.71 -80.13 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 0.99 Total: 25.68 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: 6.47 Total: -20.84 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -1.32 Total: -71.44 kcal Atomic # 8 Polarization: -59.31 SS G_CDS: -0.46 Total: -59.76 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -87.84 7.71 -80.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090011582.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.043 kcal (2) G-P(sol) polarization free energy of solvation -87.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds