Wall clock time and date at job start Tue Mar 31 2020 18:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 117.00376 * 2 1 4 4 O 1.20825 * 120.00057 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99871 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.46915 * 180.02562 * 5 3 2 7 7 C 1.34771 * 120.00289 * 89.99954 * 6 5 3 8 8 O 1.21282 * 120.00381 * 174.71040 * 7 6 5 9 9 C 1.50708 * 119.99878 * 354.71039 * 7 6 5 10 10 C 1.50694 * 109.47087 * 185.04927 * 9 7 6 11 11 C 1.38307 * 119.93349 * 89.99775 * 10 9 7 12 12 C 1.38091 * 120.07038 * 179.97438 * 11 10 9 13 13 C 1.38876 * 119.93169 * 0.02562 * 12 11 10 14 14 O 1.35758 * 120.07092 * 180.02562 * 13 12 11 15 15 C 1.34835 * 116.99856 * 5.50252 * 14 13 12 16 16 H 1.08002 * 119.99934 * 354.94535 * 15 14 13 17 17 C 1.38649 * 119.99899 * 174.94659 * 15 14 13 18 18 N 1.31551 * 120.00189 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99751 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47037 * 60.00145 * 19 17 15 21 21 H 1.48497 * 109.46938 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46985 * 299.99791 * 19 17 15 23 23 C 1.38875 * 119.86425 * 0.27341 * 13 12 11 24 24 C 1.38095 * 119.92831 * 359.45211 * 23 13 12 25 25 C 1.46504 * 119.99743 * 269.99769 * 6 5 3 26 26 C 1.53001 * 109.46984 * 124.76736 * 25 6 5 27 27 C 1.52989 * 109.47030 * 244.76471 * 25 6 5 28 28 H 1.09004 * 109.47105 * 59.99429 * 1 2 3 29 29 H 1.08993 * 109.47365 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46860 * 299.99872 * 1 2 3 31 31 H 1.08998 * 109.46869 * 60.00182 * 5 3 2 32 32 H 1.08993 * 109.46932 * 299.99950 * 5 3 2 33 33 H 1.08996 * 109.46939 * 65.04611 * 9 7 6 34 34 H 1.09000 * 109.46904 * 305.04592 * 9 7 6 35 35 H 1.08000 * 119.96019 * 0.02562 * 11 10 9 36 36 H 1.08003 * 120.03472 * 180.02562 * 12 11 10 37 37 H 0.97004 * 120.00153 * 180.02562 * 18 17 15 38 38 H 1.08000 * 120.03964 * 179.72558 * 23 13 12 39 39 H 1.08001 * 119.96917 * 180.27574 * 24 23 13 40 40 H 1.08996 * 109.47173 * 4.77305 * 25 6 5 41 41 H 1.09003 * 109.47256 * 65.24532 * 26 25 6 42 42 H 1.08998 * 109.47557 * 185.25285 * 26 25 6 43 43 H 1.09009 * 109.46835 * 305.24892 * 26 25 6 44 44 H 1.09005 * 109.47398 * 64.90652 * 27 25 6 45 45 H 1.09004 * 109.47458 * 184.90360 * 27 25 6 46 46 H 1.09004 * 109.47642 * 304.90633 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5665 1.2746 -0.0006 6 7 3.9819 2.6795 0.0002 7 6 4.1735 3.3250 1.1676 8 8 4.6092 4.4569 1.1704 9 6 3.8463 2.6403 2.4697 10 6 4.0304 3.6109 3.6077 11 6 2.9712 4.3980 4.0216 12 6 3.1365 5.2880 5.0645 13 6 4.3682 5.3926 5.6975 14 8 4.5338 6.2662 6.7233 15 6 3.4359 6.9198 7.1540 16 1 2.4970 6.7992 6.6340 17 6 3.5123 7.7465 8.2644 18 7 4.6558 7.8930 8.8980 19 14 1.9914 8.6525 8.8606 20 1 0.9375 7.6691 9.2174 21 1 2.3357 9.4651 10.0549 22 1 1.4922 9.5441 7.7831 23 6 5.4317 4.6054 5.2755 24 6 5.2584 3.7132 4.2357 25 6 4.1891 3.3827 -1.2683 26 6 3.3271 4.6464 -1.2975 27 6 5.6636 3.7680 -1.4028 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9557 0.7807 -0.8908 32 1 3.9564 0.7803 0.8891 33 1 4.5106 1.7874 2.6086 34 1 2.8123 2.2962 2.4494 35 1 2.0135 4.3159 3.5292 36 1 2.3089 5.9020 5.3875 37 1 4.7092 8.4712 9.6751 38 1 6.3920 4.6876 5.7628 39 1 6.0838 3.0975 3.9100 40 1 3.9068 2.7312 -2.0952 41 1 3.6709 5.3387 -0.5289 42 1 3.4093 5.1198 -2.2759 43 1 2.2868 4.3811 -1.1085 44 1 6.2705 2.8650 -1.4695 45 1 5.8022 4.3662 -2.3034 46 1 5.9688 4.3473 -0.5313 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110215584.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:44 Heat of formation + Delta-G solvation = -114.572264 kcal Electronic energy + Delta-G solvation = -29091.858511 eV Core-core repulsion = 24948.143800 eV Total energy + Delta-G solvation = -4143.714711 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.07444 -39.95480 -38.85194 -36.99219 -36.58414 -35.74848 -33.41907 -32.31403 -30.98956 -30.08873 -29.13392 -27.21025 -27.06152 -26.49716 -25.09579 -22.63682 -21.90924 -21.68715 -20.49343 -18.81449 -18.13116 -17.91625 -17.43523 -17.08968 -16.80882 -16.44499 -16.07408 -15.18133 -14.59523 -14.45130 -14.27726 -14.17756 -13.92601 -13.78134 -13.68382 -13.43193 -13.34434 -13.24936 -12.75323 -12.64017 -12.51811 -12.43943 -12.16666 -12.02932 -11.77598 -11.52492 -11.29024 -11.23136 -11.15392 -11.12550 -10.86981 -10.79194 -10.68553 -10.59258 -10.39335 -9.45972 -9.27441 -8.97538 -8.76769 -8.08880 -7.10744 -6.39833 -3.98344 1.84361 2.06631 2.31372 2.33408 2.76191 2.94147 3.16883 3.18175 3.20504 4.01461 4.32438 4.41725 4.50732 4.69308 4.73749 4.77271 4.85800 4.98430 5.03344 5.10090 5.15225 5.19013 5.25027 5.29640 5.36476 5.51385 5.60022 5.64974 5.73244 5.79450 5.90191 5.91584 6.02214 6.14852 6.27691 6.31037 6.47905 6.52518 6.75776 6.96847 7.10170 7.18486 7.30071 7.42557 7.43436 7.50816 7.89730 8.05591 8.24502 9.05887 9.76776 10.78304 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014930 B = 0.002644 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.995311 B =10589.085997 C =11303.769125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.362 6.362 3 C 0.432 3.568 4 O -0.488 6.488 5 C 0.121 3.879 6 N -0.606 5.606 7 C 0.521 3.479 8 O -0.500 6.500 9 C -0.083 4.083 10 C -0.170 4.170 11 C -0.056 4.056 12 C -0.232 4.232 13 C 0.157 3.843 14 O -0.178 6.178 15 C -0.391 4.391 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.864 5.864 19 Si 0.940 3.060 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.192 4.192 24 C -0.057 4.057 25 C 0.149 3.851 26 C -0.172 4.172 27 C -0.168 4.168 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.126 0.874 37 H 0.270 0.730 38 H 0.117 0.883 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.063 0.937 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.094 -17.923 -20.940 27.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.278 6.278 3 C 0.272 3.728 4 O -0.373 6.373 5 C -0.005 4.005 6 N -0.342 5.342 7 C 0.310 3.690 8 O -0.372 6.372 9 C -0.123 4.123 10 C -0.171 4.171 11 C -0.074 4.074 12 C -0.251 4.251 13 C 0.104 3.896 14 O -0.081 6.081 15 C -0.467 4.467 16 H 0.108 0.892 17 C -0.165 4.165 18 N -0.499 5.499 19 Si 0.765 3.235 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.211 4.211 24 C -0.075 4.075 25 C 0.047 3.953 26 C -0.229 4.229 27 C -0.226 4.226 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.144 0.856 37 H 0.080 0.920 38 H 0.135 0.865 39 H 0.126 0.874 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.792 -16.747 -20.582 26.804 hybrid contribution -1.273 0.392 0.131 1.338 sum -5.065 -16.355 -20.451 26.672 Atomic orbital electron populations 1.23275 0.76103 1.03717 1.02708 1.86493 1.23647 1.33411 1.84232 1.24707 0.93087 0.81772 0.73257 1.90727 1.66743 1.36234 1.43595 1.21064 0.86998 0.85179 1.07247 1.47982 1.68755 1.10509 1.06997 1.20965 0.76761 0.86662 0.84579 1.90688 1.42090 1.17868 1.86557 1.20506 1.02633 0.98325 0.90792 1.18584 0.95205 1.03277 1.00038 1.20513 0.97099 0.94496 0.95325 1.21091 0.98602 1.04481 1.00953 1.19384 0.92964 0.88779 0.88491 1.83979 1.35208 1.46849 1.42107 1.21282 0.88340 1.24945 1.12179 0.89165 1.25271 0.98569 0.97271 0.95372 1.70030 1.24505 1.36288 1.19091 0.85795 0.79968 0.79238 0.78516 1.19520 1.20293 1.19512 1.20142 0.98437 1.00579 1.01928 1.20373 0.95394 0.97128 0.94639 1.21017 0.96008 0.94192 0.84129 1.22220 1.00164 0.97880 1.02680 1.22214 0.94941 1.01860 1.03591 0.91978 0.88031 0.91681 0.85996 0.85810 0.88896 0.89656 0.87957 0.85638 0.92022 0.86537 0.87363 0.90367 0.90054 0.92297 0.91931 0.92868 0.91839 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -2.85 10.56 -39.24 -0.41 -3.26 16 3 C 0.43 3.97 7.58 36.01 0.27 4.25 16 4 O -0.49 -6.29 15.65 -18.75 -0.29 -6.59 16 5 C 0.12 0.83 5.70 -5.19 -0.03 0.80 16 6 N -0.61 -6.39 1.91 -167.47 -0.32 -6.71 16 7 C 0.52 7.39 7.05 -10.98 -0.08 7.31 16 8 O -0.50 -9.10 12.32 5.56 0.07 -9.03 16 9 C -0.08 -1.10 4.40 -29.03 -0.13 -1.23 16 10 C -0.17 -3.06 4.38 -104.57 -0.46 -3.51 16 11 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 12 C -0.23 -5.37 9.17 -39.40 -0.36 -5.73 16 13 C 0.16 3.99 6.65 -39.11 -0.26 3.73 16 14 O -0.18 -5.26 9.76 0.01 0.00 -5.26 16 15 C -0.39 -11.30 9.49 30.88 0.29 -11.00 16 16 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 17 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 18 N -0.86 -25.92 13.67 55.48 0.76 -25.16 16 19 Si 0.94 21.09 29.55 -169.99 -5.02 16.07 16 20 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 C -0.19 -4.25 9.99 -39.40 -0.39 -4.64 16 24 C -0.06 -1.07 9.69 -39.61 -0.38 -1.45 16 25 C 0.15 1.50 3.27 -67.93 -0.22 1.27 16 26 C -0.17 -2.08 8.95 37.16 0.33 -1.75 16 27 C -0.17 -1.65 9.24 37.15 0.34 -1.31 16 28 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 31 H 0.12 0.43 7.96 -51.93 -0.41 0.02 16 32 H 0.12 0.59 6.62 -51.93 -0.34 0.25 16 33 H 0.09 0.93 7.45 -51.93 -0.39 0.54 16 34 H 0.09 1.06 7.57 -51.93 -0.39 0.67 16 35 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.13 2.91 5.64 -52.48 -0.30 2.61 16 37 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 39 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 40 H 0.08 0.59 7.84 -51.93 -0.41 0.19 16 41 H 0.08 1.24 6.19 -51.93 -0.32 0.92 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.84 7.61 -51.92 -0.39 0.45 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.08 1.06 6.24 -51.93 -0.32 0.73 16 LS Contribution 385.68 15.07 5.81 5.81 Total: -1.00 -36.25 385.68 -6.39 -42.64 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -6.49 Total: 3.98 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -0.49 Total: -12.48 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.44 Total: -31.87 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.64 Total: -24.15 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.25 -6.39 -42.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110215584.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.932 kcal (2) G-P(sol) polarization free energy of solvation -36.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds