Wall clock time and date at job start Tue Mar 31 2020 19:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34238 * 116.99857 * 2 1 4 4 O 1.20818 * 119.99675 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00046 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47013 * 180.02562 * 5 3 2 7 7 C 1.37098 * 119.99724 * 269.99567 * 6 5 3 8 8 H 1.08004 * 120.00259 * 197.25815 * 7 6 5 9 9 C 1.38952 * 120.00247 * 17.26162 * 7 6 5 10 10 N 1.31409 * 119.99783 * 4.37835 * 9 7 6 11 11 Si 1.86802 * 120.00201 * 184.38178 * 9 7 6 12 12 H 1.48500 * 109.47143 * 89.99820 * 11 9 7 13 13 H 1.48497 * 109.46799 * 209.99883 * 11 9 7 14 14 H 1.48503 * 109.47179 * 329.99823 * 11 9 7 15 15 C 1.34771 * 120.00382 * 89.99913 * 6 5 3 16 16 O 1.21298 * 119.99971 * 354.73216 * 15 6 5 17 17 C 1.50704 * 120.00308 * 174.73719 * 15 6 5 18 18 C 1.50696 * 109.47208 * 185.12734 * 17 15 6 19 19 C 1.38167 * 120.03029 * 265.01963 * 18 17 15 20 20 C 1.38235 * 120.05883 * 179.97438 * 19 18 17 21 21 C 1.38292 * 120.11351 * 359.97438 * 20 19 18 22 22 C 1.38118 * 120.05318 * 0.02562 * 21 20 19 23 23 C 1.38715 * 120.02944 * 84.99664 * 18 17 15 24 24 O 1.35897 * 120.05434 * 0.02562 * 23 18 17 25 25 C 1.42905 * 116.99764 * 178.19091 * 24 23 18 26 26 C 1.53005 * 109.46641 * 155.93250 * 25 24 23 27 27 C 1.52992 * 109.47311 * 275.93034 * 25 24 23 28 28 H 1.09000 * 109.47420 * 60.00541 * 1 2 3 29 29 H 1.09000 * 109.46608 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47214 * 300.00070 * 1 2 3 31 31 H 1.08996 * 109.47617 * 59.99538 * 5 3 2 32 32 H 1.09002 * 109.46953 * 299.99752 * 5 3 2 33 33 H 0.96997 * 120.00103 * 185.00413 * 10 9 7 34 34 H 1.08994 * 109.47271 * 65.12401 * 17 15 6 35 35 H 1.09001 * 109.46932 * 305.12518 * 17 15 6 36 36 H 1.08003 * 119.96760 * 0.02562 * 19 18 17 37 37 H 1.08006 * 119.94580 * 180.02562 * 20 19 18 38 38 H 1.08001 * 119.97233 * 180.27878 * 21 20 19 39 39 H 1.08002 * 120.02842 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.47059 * 35.93720 * 25 24 23 41 41 H 1.08998 * 109.47408 * 60.00110 * 26 25 24 42 42 H 1.09001 * 109.47067 * 180.02562 * 26 25 24 43 43 H 1.08998 * 109.47101 * 300.00026 * 26 25 24 44 44 H 1.09001 * 109.47339 * 180.02562 * 27 25 24 45 45 H 1.09001 * 109.47619 * 300.00343 * 27 25 24 46 46 H 1.09003 * 109.47257 * 60.00072 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9815 2.6799 0.0002 7 6 4.1754 3.3379 -1.1868 8 1 4.7374 4.2600 -1.2076 9 6 3.6490 2.8186 -2.3632 10 7 2.8932 1.7442 -2.3268 11 14 4.0155 3.6477 -3.9966 12 1 5.2485 3.0633 -4.5827 13 1 2.8769 3.4355 -4.9259 14 1 4.2126 5.1035 -3.7795 15 6 4.1731 3.3254 1.1676 16 8 3.9102 2.7742 2.2156 17 6 4.7137 4.7321 1.1710 18 6 4.9514 5.1755 2.5915 19 6 3.9829 5.8979 3.2617 20 6 4.2001 6.3045 4.5649 21 6 5.3865 5.9890 5.2015 22 6 6.3579 5.2670 4.5361 23 6 6.1426 4.8582 3.2277 24 8 7.0968 4.1478 2.5707 25 6 8.3141 3.8916 3.2741 26 6 8.9877 2.6476 2.6910 27 6 9.2496 5.0934 3.1289 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.9557 0.7810 -0.8907 32 1 3.9563 0.7807 0.8892 33 1 2.5855 1.3395 -3.1528 34 1 3.9934 5.3994 0.6978 35 1 5.6533 4.7616 0.6192 36 1 3.0550 6.1445 2.7670 37 1 3.4416 6.8688 5.0871 38 1 5.5520 6.3039 6.2213 39 1 7.2841 5.0204 5.0338 40 1 8.0962 3.7260 4.3291 41 1 9.2056 2.8132 1.6360 42 1 9.9160 2.4519 3.2277 43 1 8.3212 1.7914 2.7944 44 1 10.1783 4.8978 3.6650 45 1 9.4676 5.2590 2.0739 46 1 8.7698 5.9797 3.5442 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120539825.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:29 Heat of formation + Delta-G solvation = -120.255799 kcal Electronic energy + Delta-G solvation = -30203.305968 eV Core-core repulsion = 26059.344800 eV Total energy + Delta-G solvation = -4143.961168 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.17653 -39.28850 -38.19494 -37.30330 -35.33945 -34.46727 -33.23530 -32.03628 -31.45274 -29.66231 -28.69159 -27.27793 -26.92793 -25.86543 -24.39755 -23.19101 -21.50541 -20.53535 -20.07685 -19.15822 -17.95864 -16.95548 -16.47200 -16.18833 -15.79976 -15.32145 -15.30989 -15.27725 -15.05324 -14.41395 -14.30442 -14.16361 -13.88166 -13.44012 -13.16115 -12.81887 -12.64270 -12.49512 -12.38122 -12.30472 -12.27520 -12.10727 -11.66859 -11.43189 -11.38663 -11.26325 -11.15953 -11.08162 -10.74635 -10.71609 -10.63804 -10.49519 -10.40271 -10.20923 -9.72266 -9.47713 -8.93339 -8.69993 -8.34650 -7.91615 -7.72040 -6.38726 -3.98044 1.67781 1.81421 3.11570 3.20096 3.23283 3.44515 3.62177 3.85039 4.02736 4.14287 4.16402 4.77746 4.85057 4.92389 5.00513 5.09357 5.12512 5.20734 5.36891 5.47806 5.53779 5.64909 5.68963 5.76515 5.77149 5.81226 5.85141 6.02511 6.03170 6.07439 6.12408 6.17791 6.22601 6.27194 6.37629 6.51076 6.62324 6.66357 6.78351 6.91973 6.94423 7.16583 7.35645 7.58246 7.70653 7.78654 8.31061 9.03627 9.26042 9.44435 9.84673 10.64680 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011053 B = 0.004109 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.543260 B = 6813.213424 C = 7644.479714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.493 3.507 4 O -0.511 6.511 5 C 0.161 3.839 6 N -0.437 5.437 7 C -0.318 4.318 8 H 0.103 0.897 9 C 0.034 3.966 10 N -0.889 5.889 11 Si 0.933 3.067 12 H -0.277 1.277 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.482 3.518 16 O -0.593 6.593 17 C -0.077 4.077 18 C -0.078 4.078 19 C -0.071 4.071 20 C -0.161 4.161 21 C -0.092 4.092 22 C -0.216 4.216 23 C 0.145 3.855 24 O -0.299 6.299 25 C 0.076 3.924 26 C -0.148 4.148 27 C -0.178 4.178 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.132 0.868 32 H 0.073 0.927 33 H 0.272 0.728 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.124 0.876 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.048 3.346 7.918 11.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.293 6.293 3 C 0.335 3.665 4 O -0.397 6.397 5 C 0.035 3.965 6 N -0.156 5.156 7 C -0.445 4.445 8 H 0.121 0.879 9 C -0.168 4.168 10 N -0.530 5.530 11 Si 0.760 3.240 12 H -0.203 1.203 13 H -0.210 1.210 14 H -0.194 1.194 15 C 0.271 3.729 16 O -0.478 6.478 17 C -0.117 4.117 18 C -0.079 4.079 19 C -0.089 4.089 20 C -0.179 4.179 21 C -0.110 4.110 22 C -0.234 4.234 23 C 0.100 3.900 24 O -0.213 6.213 25 C 0.019 3.981 26 C -0.205 4.205 27 C -0.235 4.235 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.150 0.850 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.143 0.857 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.545 3.218 8.070 11.506 hybrid contribution -0.209 0.422 -0.858 0.979 sum 7.336 3.640 7.212 10.912 Atomic orbital electron populations 1.22891 0.79124 1.01593 1.01432 1.86464 1.21339 1.35763 1.85781 1.23926 0.92272 0.80358 0.69948 1.90483 1.66597 1.36462 1.46147 1.20589 0.87048 0.85422 1.03402 1.43360 1.58404 1.08518 1.05360 1.19736 1.32231 1.08656 0.83892 0.87893 1.25209 0.94668 0.96791 1.00129 1.69590 1.33616 1.21380 1.28409 0.85813 0.77767 0.79461 0.80948 1.20328 1.20957 1.19434 1.19991 0.81924 0.87479 0.83478 1.90549 1.56660 1.68733 1.31874 1.20283 1.02859 0.95845 0.92696 1.18948 0.92085 1.00122 0.96740 1.20876 0.97578 0.96104 0.94338 1.20918 0.97858 1.03720 0.95390 1.20773 0.93547 0.97733 0.98992 1.21110 1.01695 1.05917 0.94700 1.18733 0.88895 0.91802 0.90608 1.86206 1.24215 1.68859 1.42016 1.22381 0.83278 0.95757 0.96666 1.21829 1.00032 0.96435 1.02238 1.22360 0.99471 0.98356 1.03321 0.92813 0.89780 0.93336 0.85005 0.90906 0.91717 0.88914 0.88757 0.85680 0.86429 0.86520 0.85867 0.91170 0.91339 0.90975 0.91421 0.91401 0.91399 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 10.56 101.05 1.07 1.88 16 2 O -0.38 -8.54 10.57 -39.28 -0.42 -8.95 16 3 C 0.49 12.75 5.88 36.00 0.21 12.97 16 4 O -0.51 -14.69 15.89 -18.74 -0.30 -14.99 16 5 C 0.16 4.03 5.21 -5.20 -0.03 4.00 16 6 N -0.44 -11.22 2.11 -116.10 -0.25 -11.47 16 7 C -0.32 -8.02 9.28 -14.93 -0.14 -8.16 16 8 H 0.10 2.42 6.42 -52.48 -0.34 2.08 16 9 C 0.03 0.85 5.28 -17.47 -0.09 0.76 16 10 N -0.89 -23.15 8.21 55.50 0.46 -22.70 16 11 Si 0.93 19.67 29.56 -169.99 -5.02 14.65 16 12 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 13 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 15 C 0.48 12.04 7.61 -10.99 -0.08 11.96 16 16 O -0.59 -16.20 15.68 5.54 0.09 -16.11 16 17 C -0.08 -1.61 4.01 -29.03 -0.12 -1.72 16 18 C -0.08 -1.49 4.39 -104.47 -0.46 -1.95 16 19 C -0.07 -1.23 9.68 -39.61 -0.38 -1.61 16 20 C -0.16 -2.39 10.04 -39.56 -0.40 -2.78 16 21 C -0.09 -1.29 10.04 -39.61 -0.40 -1.69 16 22 C -0.22 -3.23 8.35 -39.43 -0.33 -3.56 16 23 C 0.15 2.57 6.54 -39.21 -0.26 2.32 16 24 O -0.30 -5.18 8.94 -19.42 -0.17 -5.35 16 25 C 0.08 0.97 2.86 -26.73 -0.08 0.89 16 26 C -0.15 -1.69 9.56 37.16 0.36 -1.34 16 27 C -0.18 -1.85 9.26 37.15 0.34 -1.51 16 28 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 31 H 0.13 3.28 6.27 -51.93 -0.33 2.96 16 32 H 0.07 1.74 7.50 -51.93 -0.39 1.35 16 33 H 0.27 6.80 8.32 -40.82 -0.34 6.46 16 34 H 0.09 1.86 8.05 -51.93 -0.42 1.44 16 35 H 0.09 1.88 7.18 -51.93 -0.37 1.51 16 36 H 0.13 2.05 8.06 -52.48 -0.42 1.63 16 37 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 39 H 0.12 1.53 5.66 -52.49 -0.30 1.23 16 40 H 0.07 0.84 6.00 -51.93 -0.31 0.53 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.06 0.66 7.33 -51.93 -0.38 0.28 16 LS Contribution 382.84 15.07 5.77 5.77 Total: -1.00 -33.09 382.84 -7.24 -40.33 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -6.62 Total: 8.38 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -0.78 Total: 10.44 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.21 Total: -34.16 kcal Atomic # 8 Polarization: -44.60 SS G_CDS: -0.80 Total: -45.40 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.09 -7.24 -40.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120539825.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.924 kcal (2) G-P(sol) polarization free energy of solvation -33.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds