Wall clock time and date at job start Tue Mar 31 2020 19:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34238 * 116.99857 * 2 1 4 4 O 1.20818 * 119.99675 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00046 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47013 * 180.02562 * 5 3 2 7 7 C 1.37098 * 119.99724 * 269.99567 * 6 5 3 8 8 H 1.08004 * 120.00259 * 197.25815 * 7 6 5 9 9 C 1.38952 * 120.00247 * 17.26162 * 7 6 5 10 10 N 1.31409 * 119.99783 * 4.37835 * 9 7 6 11 11 Si 1.86802 * 120.00201 * 184.38178 * 9 7 6 12 12 H 1.48500 * 109.47143 * 89.99820 * 11 9 7 13 13 H 1.48497 * 109.46799 * 209.99883 * 11 9 7 14 14 H 1.48503 * 109.47179 * 329.99823 * 11 9 7 15 15 C 1.34771 * 120.00382 * 89.99913 * 6 5 3 16 16 O 1.21298 * 119.99971 * 354.73216 * 15 6 5 17 17 C 1.50704 * 120.00308 * 174.73719 * 15 6 5 18 18 C 1.50696 * 109.47208 * 185.12734 * 17 15 6 19 19 C 1.38167 * 120.03029 * 265.01963 * 18 17 15 20 20 C 1.38235 * 120.05883 * 179.97438 * 19 18 17 21 21 C 1.38292 * 120.11351 * 359.97438 * 20 19 18 22 22 C 1.38118 * 120.05318 * 0.02562 * 21 20 19 23 23 C 1.38715 * 120.02944 * 84.99664 * 18 17 15 24 24 O 1.35897 * 120.05434 * 0.02562 * 23 18 17 25 25 C 1.42905 * 116.99764 * 178.19091 * 24 23 18 26 26 C 1.53005 * 109.46641 * 155.93250 * 25 24 23 27 27 C 1.52992 * 109.47311 * 275.93034 * 25 24 23 28 28 H 1.09000 * 109.47420 * 60.00541 * 1 2 3 29 29 H 1.09000 * 109.46608 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47214 * 300.00070 * 1 2 3 31 31 H 1.08996 * 109.47617 * 59.99538 * 5 3 2 32 32 H 1.09002 * 109.46953 * 299.99752 * 5 3 2 33 33 H 0.96997 * 120.00103 * 185.00413 * 10 9 7 34 34 H 1.08994 * 109.47271 * 65.12401 * 17 15 6 35 35 H 1.09001 * 109.46932 * 305.12518 * 17 15 6 36 36 H 1.08003 * 119.96760 * 0.02562 * 19 18 17 37 37 H 1.08006 * 119.94580 * 180.02562 * 20 19 18 38 38 H 1.08001 * 119.97233 * 180.27878 * 21 20 19 39 39 H 1.08002 * 120.02842 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.47059 * 35.93720 * 25 24 23 41 41 H 1.08998 * 109.47408 * 60.00110 * 26 25 24 42 42 H 1.09001 * 109.47067 * 180.02562 * 26 25 24 43 43 H 1.08998 * 109.47101 * 300.00026 * 26 25 24 44 44 H 1.09001 * 109.47339 * 180.02562 * 27 25 24 45 45 H 1.09001 * 109.47619 * 300.00343 * 27 25 24 46 46 H 1.09003 * 109.47257 * 60.00072 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9815 2.6799 0.0002 7 6 4.1754 3.3379 -1.1868 8 1 4.7374 4.2600 -1.2076 9 6 3.6490 2.8186 -2.3632 10 7 2.8932 1.7442 -2.3268 11 14 4.0155 3.6477 -3.9966 12 1 5.2485 3.0633 -4.5827 13 1 2.8769 3.4355 -4.9259 14 1 4.2126 5.1035 -3.7795 15 6 4.1731 3.3254 1.1676 16 8 3.9102 2.7742 2.2156 17 6 4.7137 4.7321 1.1710 18 6 4.9514 5.1755 2.5915 19 6 3.9829 5.8979 3.2617 20 6 4.2001 6.3045 4.5649 21 6 5.3865 5.9890 5.2015 22 6 6.3579 5.2670 4.5361 23 6 6.1426 4.8582 3.2277 24 8 7.0968 4.1478 2.5707 25 6 8.3141 3.8916 3.2741 26 6 8.9877 2.6476 2.6910 27 6 9.2496 5.0934 3.1289 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.9557 0.7810 -0.8907 32 1 3.9563 0.7807 0.8892 33 1 2.5855 1.3395 -3.1528 34 1 3.9934 5.3994 0.6978 35 1 5.6533 4.7616 0.6192 36 1 3.0550 6.1445 2.7670 37 1 3.4416 6.8688 5.0871 38 1 5.5520 6.3039 6.2213 39 1 7.2841 5.0204 5.0338 40 1 8.0962 3.7260 4.3291 41 1 9.2056 2.8132 1.6360 42 1 9.9160 2.4519 3.2277 43 1 8.3212 1.7914 2.7944 44 1 10.1783 4.8978 3.6650 45 1 9.4676 5.2590 2.0739 46 1 8.7698 5.9797 3.5442 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120539825.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:28 Heat of formation + Delta-G solvation = -138.449653 kcal Electronic energy + Delta-G solvation = -30204.094912 eV Core-core repulsion = 26059.344800 eV Total energy + Delta-G solvation = -4144.750113 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.53675 -41.12395 -40.01183 -38.53778 -37.26969 -36.46991 -34.34454 -33.48942 -33.29884 -30.93889 -30.41617 -28.49187 -28.10850 -27.59628 -26.25981 -24.31035 -22.91729 -21.94226 -21.55196 -21.06793 -19.26475 -18.66383 -18.44191 -18.08851 -17.28484 -16.98203 -16.93693 -16.58502 -16.36853 -16.04448 -15.93217 -15.48989 -15.43192 -14.85821 -14.63475 -14.23427 -14.20708 -14.07513 -13.86015 -13.54944 -13.25617 -13.18464 -13.10622 -13.05152 -12.93356 -12.79197 -12.68663 -12.55417 -12.46366 -12.15931 -12.08776 -12.06969 -11.65813 -11.56777 -11.48789 -11.35498 -10.93138 -10.54523 -9.90446 -9.70595 -8.96632 -8.31474 -5.97161 0.43897 0.59913 1.42676 1.46641 1.58271 1.73718 1.88322 2.22290 2.35821 2.36390 2.76878 3.08791 3.19693 3.81535 3.90952 3.91575 4.03870 4.14024 4.24453 4.27050 4.33976 4.35277 4.40421 4.41811 4.44504 4.61321 4.64590 4.70687 4.72295 4.74892 4.77681 4.85743 4.89165 4.92135 5.00355 5.15280 5.22880 5.29732 5.40964 5.47885 5.57576 5.65949 5.67593 5.76000 5.99135 6.35154 6.63044 7.07630 7.26769 7.49606 7.89718 8.71859 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011053 B = 0.004109 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.543260 B = 6813.213424 C = 7644.479714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.378 6.378 3 C 0.495 3.505 4 O -0.548 6.548 5 C 0.159 3.841 6 N -0.447 5.447 7 C -0.337 4.337 8 H 0.114 0.886 9 C -0.009 4.009 10 N -0.911 5.911 11 Si 1.001 2.999 12 H -0.265 1.265 13 H -0.291 1.291 14 H -0.261 1.261 15 C 0.471 3.529 16 O -0.624 6.624 17 C -0.064 4.064 18 C -0.116 4.116 19 C -0.089 4.089 20 C -0.162 4.162 21 C -0.084 4.084 22 C -0.216 4.216 23 C 0.130 3.870 24 O -0.329 6.329 25 C 0.064 3.936 26 C -0.146 4.146 27 C -0.170 4.170 28 H 0.044 0.956 29 H 0.134 0.866 30 H 0.048 0.952 31 H 0.130 0.870 32 H 0.075 0.925 33 H 0.271 0.729 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.122 0.878 37 H 0.147 0.853 38 H 0.157 0.843 39 H 0.150 0.850 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.106 0.894 43 H 0.046 0.954 44 H 0.097 0.903 45 H 0.059 0.941 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.279 4.147 8.986 13.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.295 6.295 3 C 0.339 3.661 4 O -0.437 6.437 5 C 0.033 3.967 6 N -0.166 5.166 7 C -0.464 4.464 8 H 0.132 0.868 9 C -0.208 4.208 10 N -0.553 5.553 11 Si 0.825 3.175 12 H -0.190 1.190 13 H -0.217 1.217 14 H -0.185 1.185 15 C 0.262 3.738 16 O -0.511 6.511 17 C -0.103 4.103 18 C -0.117 4.117 19 C -0.107 4.107 20 C -0.180 4.180 21 C -0.102 4.102 22 C -0.234 4.234 23 C 0.084 3.916 24 O -0.243 6.243 25 C 0.009 3.991 26 C -0.203 4.203 27 C -0.227 4.227 28 H 0.063 0.937 29 H 0.152 0.848 30 H 0.067 0.933 31 H 0.148 0.852 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.140 0.860 37 H 0.164 0.836 38 H 0.175 0.825 39 H 0.168 0.832 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.125 0.875 43 H 0.065 0.935 44 H 0.116 0.884 45 H 0.078 0.922 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.792 4.000 9.140 13.297 hybrid contribution -0.633 0.077 -1.112 1.282 sum 8.159 4.077 8.028 12.150 Atomic orbital electron populations 1.23265 0.76441 1.04761 1.01017 1.86426 1.23929 1.33987 1.85111 1.23986 0.92519 0.80612 0.68973 1.90449 1.67408 1.37764 1.48050 1.20603 0.87099 0.85741 1.03236 1.43606 1.58312 1.08754 1.05936 1.20121 1.32881 1.09339 0.84052 0.86808 1.26112 0.94180 0.97226 1.03236 1.69688 1.34129 1.22441 1.29023 0.84789 0.77531 0.78871 0.76354 1.19018 1.21664 1.18535 1.20732 0.81394 0.88847 0.82812 1.90494 1.57988 1.69801 1.32805 1.20124 1.02347 0.93084 0.94748 1.18994 0.93928 1.02536 0.96203 1.21040 0.97285 0.96650 0.95753 1.21274 0.99078 1.03334 0.94337 1.21277 0.92427 0.95964 1.00492 1.21463 1.03062 1.05268 0.93614 1.18927 0.88708 0.92189 0.91730 1.86170 1.25597 1.68990 1.43560 1.22745 0.82315 0.97210 0.96878 1.21871 1.00949 0.95180 1.02323 1.22304 1.00030 0.97044 1.03295 0.93742 0.84806 0.93289 0.85210 0.90731 0.91813 0.89008 0.88658 0.86046 0.83560 0.82513 0.83208 0.90284 0.92116 0.87528 0.93469 0.88437 0.92183 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.40 10.56 113.37 1.20 2.59 16 2 O -0.38 -17.27 10.57 -51.49 -0.54 -17.81 16 3 C 0.50 26.34 5.88 71.23 0.42 26.76 16 4 O -0.55 -32.46 15.89 21.99 0.35 -32.11 16 5 C 0.16 8.25 5.21 85.63 0.45 8.70 16 6 N -0.45 -23.82 2.11 -639.61 -1.35 -25.17 16 7 C -0.34 -17.42 9.28 84.04 0.78 -16.64 16 8 H 0.11 5.46 6.42 -2.91 -0.02 5.44 16 9 C -0.01 -0.43 5.28 84.93 0.45 0.02 16 10 N -0.91 -48.28 8.21 21.66 0.18 -48.10 16 11 Si 1.00 40.36 29.56 68.60 2.03 42.38 16 12 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 13 H -0.29 -11.97 7.11 99.48 0.71 -11.26 16 14 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 15 C 0.47 24.56 7.61 87.66 0.67 25.22 16 16 O -0.62 -35.49 15.68 -3.09 -0.05 -35.54 16 17 C -0.06 -2.76 4.01 29.10 0.12 -2.65 16 18 C -0.12 -4.54 4.39 -19.77 -0.09 -4.63 16 19 C -0.09 -3.12 9.68 22.25 0.22 -2.91 16 20 C -0.16 -4.53 10.04 22.28 0.22 -4.30 16 21 C -0.08 -2.09 10.04 22.25 0.22 -1.87 16 22 C -0.22 -6.03 8.35 22.36 0.19 -5.85 16 23 C 0.13 4.61 6.54 22.51 0.15 4.76 16 24 O -0.33 -11.53 8.94 -92.39 -0.83 -12.36 16 25 C 0.06 1.57 2.86 30.59 0.09 1.65 16 26 C -0.15 -3.24 9.56 71.98 0.69 -2.55 16 27 C -0.17 -3.20 9.26 71.98 0.67 -2.53 16 28 H 0.04 1.68 8.13 -2.39 -0.02 1.66 16 29 H 0.13 3.44 8.14 -2.39 -0.02 3.42 16 30 H 0.05 1.75 8.13 -2.39 -0.02 1.73 16 31 H 0.13 6.71 6.27 -2.39 -0.01 6.70 16 32 H 0.07 3.75 7.50 -2.39 -0.02 3.73 16 33 H 0.27 13.76 8.32 -92.71 -0.77 12.99 16 34 H 0.09 3.87 8.05 -2.39 -0.02 3.86 16 35 H 0.10 3.99 7.18 -2.39 -0.02 3.98 16 36 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 37 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 38 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 39 H 0.15 3.26 5.66 -2.91 -0.02 3.24 16 40 H 0.08 1.75 6.00 -2.39 -0.01 1.74 16 41 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.06 1.15 7.33 -2.39 -0.02 1.13 16 Total: -1.00 -74.16 382.84 7.20 -66.97 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: 0.99 Total: 35.97 kcal Atomic # 6 Polarization: 19.35 SS G_CDS: 6.42 Total: 25.78 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: -1.17 Total: -73.28 kcal Atomic # 8 Polarization: -96.75 SS G_CDS: -1.07 Total: -97.82 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.38 kcal Total: -74.16 7.20 -66.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120539825.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.484 kcal (2) G-P(sol) polarization free energy of solvation -74.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds