Wall clock time and date at job start Tue Mar 31 2020 19:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34222 * 117.00561 * 2 1 4 4 O 1.20836 * 119.99744 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00590 * 180.02562 * 3 2 1 6 6 N 1.46493 * 109.47423 * 179.97438 * 5 3 2 7 7 C 1.37103 * 120.00145 * 269.99623 * 6 5 3 8 8 H 1.07994 * 119.99829 * 197.26221 * 7 6 5 9 9 C 1.38946 * 119.99606 * 17.26341 * 7 6 5 10 10 N 1.31413 * 120.00116 * 4.36407 * 9 7 6 11 11 Si 1.86795 * 119.99969 * 184.36557 * 9 7 6 12 12 H 1.48505 * 109.47341 * 89.99852 * 11 9 7 13 13 H 1.48494 * 109.47437 * 209.99910 * 11 9 7 14 14 H 1.48504 * 109.47219 * 330.00207 * 11 9 7 15 15 C 1.34779 * 120.00275 * 89.99642 * 6 5 3 16 16 O 1.21301 * 119.99652 * 354.74017 * 15 6 5 17 17 C 1.50696 * 120.00188 * 174.73808 * 15 6 5 18 18 C 1.50701 * 109.47296 * 184.98287 * 17 15 6 19 19 C 1.38283 * 119.97317 * 270.02661 * 18 17 15 20 20 C 1.38246 * 120.11511 * 180.02562 * 19 18 17 21 21 C 1.38168 * 120.05294 * 359.67847 * 20 19 18 22 22 C 1.38711 * 119.94335 * 0.57361 * 21 20 19 23 23 O 1.35903 * 120.05774 * 179.72006 * 22 21 20 24 24 C 1.42898 * 116.99669 * 357.86298 * 23 22 21 25 25 C 1.52999 * 109.46862 * 155.97866 * 24 23 22 26 26 C 1.52992 * 109.47194 * 275.98089 * 24 23 22 27 27 C 1.38128 * 119.97487 * 89.99972 * 18 17 15 28 28 H 1.08998 * 109.47663 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47214 * 300.00494 * 1 2 3 30 30 H 1.09005 * 109.47148 * 59.99969 * 1 2 3 31 31 H 1.09000 * 109.47170 * 59.99117 * 5 3 2 32 32 H 1.09007 * 109.46587 * 299.99870 * 5 3 2 33 33 H 0.97003 * 119.99739 * 185.00484 * 10 9 7 34 34 H 1.08996 * 109.47239 * 64.98706 * 17 15 6 35 35 H 1.08996 * 109.47470 * 304.98256 * 17 15 6 36 36 H 1.08005 * 119.94440 * 359.97438 * 19 18 17 37 37 H 1.07996 * 119.97750 * 179.97438 * 20 19 18 38 38 H 1.07999 * 120.03277 * 180.29469 * 21 20 19 39 39 H 1.09003 * 109.47086 * 35.98595 * 24 23 22 40 40 H 1.08999 * 109.46997 * 60.00078 * 25 24 23 41 41 H 1.08999 * 109.47416 * 179.97438 * 25 24 23 42 42 H 1.09000 * 109.47697 * 300.00099 * 25 24 23 43 43 H 1.08999 * 109.47188 * 180.02562 * 26 24 23 44 44 H 1.08999 * 109.47031 * 300.00145 * 26 24 23 45 45 H 1.08994 * 109.47398 * 60.00073 * 26 24 23 46 46 H 1.08000 * 120.02073 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9818 2.6795 -0.0011 7 6 4.1758 3.3366 -1.1886 8 1 4.7379 4.2585 -1.2101 9 6 3.6493 2.8163 -2.3645 10 7 2.8937 1.7419 -2.3272 11 14 4.0156 3.6442 -3.9984 12 1 5.2486 3.0595 -4.5843 13 1 2.8770 3.4312 -4.9276 14 1 4.2126 5.1002 -3.7825 15 6 4.1733 3.3261 1.1659 16 8 3.9104 2.7758 2.2144 17 6 4.7141 4.7327 1.1681 18 6 4.9483 5.1787 2.5884 19 6 3.9384 5.8120 3.2891 20 6 4.1503 6.2228 4.5920 21 6 5.3702 5.9954 5.1995 22 6 6.3867 5.3650 4.4971 23 8 7.5894 5.1452 5.0905 24 6 7.7532 5.6315 6.4241 25 6 8.8460 4.8261 7.1299 26 6 8.1534 7.1076 6.3832 27 6 6.1715 4.9539 3.1894 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 3.9558 0.7807 -0.8907 32 1 3.9564 0.7804 0.8892 33 1 2.5859 1.3365 -3.1529 34 1 3.9949 5.3992 0.6920 35 1 5.6549 4.7612 0.6185 36 1 2.9826 5.9868 2.8175 37 1 3.3601 6.7176 5.1371 38 1 5.5338 6.3122 6.2190 39 1 6.8145 5.5244 6.9678 40 1 9.7846 4.9331 6.5863 41 1 8.9713 5.1973 8.1471 42 1 8.5609 3.7745 7.1591 43 1 8.2788 7.4784 7.4005 44 1 9.0921 7.2146 5.8395 45 1 7.3750 7.6813 5.8804 46 1 6.9600 4.4592 2.6417 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120577071.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:32 Heat of formation + Delta-G solvation = -122.316159 kcal Electronic energy + Delta-G solvation = -29229.802605 eV Core-core repulsion = 25085.752093 eV Total energy + Delta-G solvation = -4144.050512 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.15584 -39.39344 -38.46022 -37.34417 -35.37101 -34.51982 -33.30189 -32.15445 -31.51888 -29.56935 -28.79575 -27.55096 -26.99986 -25.95289 -24.50296 -22.73504 -22.23873 -20.61648 -19.89953 -19.21043 -17.95504 -16.87088 -16.51664 -16.21100 -15.96011 -15.68408 -15.40434 -15.34554 -15.12435 -14.44886 -14.33480 -14.22642 -13.91330 -13.48707 -13.28043 -12.96645 -12.75186 -12.66638 -12.48602 -12.41213 -12.33941 -12.18395 -11.74996 -11.44972 -11.35336 -11.31298 -11.22627 -11.13137 -10.92532 -10.79070 -10.66462 -10.56629 -10.45086 -10.30470 -9.75404 -9.53151 -8.97775 -8.75920 -8.33743 -7.97840 -7.85111 -6.44350 -4.04711 1.65890 1.80865 3.08252 3.17261 3.20443 3.26154 3.55350 3.80780 3.97336 4.11210 4.11412 4.61024 4.73682 4.79415 4.87349 5.03903 5.09961 5.13734 5.31504 5.36379 5.43784 5.52296 5.58121 5.70454 5.74999 5.76678 5.82834 5.84566 5.93465 5.97103 6.00734 6.08863 6.12806 6.26478 6.31882 6.45237 6.55118 6.59691 6.74559 6.86631 7.03788 7.10006 7.29745 7.53007 7.65285 7.67273 8.23898 8.97177 9.21499 9.36228 9.75976 10.58717 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014490 B = 0.002979 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.843602 B = 9395.404056 C =10330.587604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.375 6.375 3 C 0.493 3.507 4 O -0.512 6.512 5 C 0.160 3.840 6 N -0.435 5.435 7 C -0.323 4.323 8 H 0.105 0.895 9 C 0.036 3.964 10 N -0.886 5.886 11 Si 0.935 3.065 12 H -0.277 1.277 13 H -0.284 1.284 14 H -0.269 1.269 15 C 0.475 3.525 16 O -0.591 6.591 17 C -0.087 4.087 18 C -0.006 4.006 19 C -0.140 4.140 20 C -0.083 4.083 21 C -0.221 4.221 22 C 0.127 3.873 23 O -0.312 6.312 24 C 0.075 3.925 25 C -0.148 4.148 26 C -0.178 4.178 27 C -0.140 4.140 28 H 0.084 0.916 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.134 0.866 32 H 0.075 0.925 33 H 0.273 0.727 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.289 5.362 10.675 13.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.293 6.293 3 C 0.335 3.665 4 O -0.397 6.397 5 C 0.034 3.966 6 N -0.154 5.154 7 C -0.450 4.450 8 H 0.122 0.878 9 C -0.167 4.167 10 N -0.527 5.527 11 Si 0.761 3.239 12 H -0.203 1.203 13 H -0.209 1.209 14 H -0.194 1.194 15 C 0.264 3.736 16 O -0.476 6.476 17 C -0.127 4.127 18 C -0.007 4.007 19 C -0.159 4.159 20 C -0.101 4.101 21 C -0.240 4.240 22 C 0.083 3.917 23 O -0.227 6.227 24 C 0.019 3.981 25 C -0.205 4.205 26 C -0.236 4.236 27 C -0.159 4.159 28 H 0.103 0.897 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.151 0.849 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.952 5.222 10.957 13.519 hybrid contribution -0.469 0.493 -0.945 1.164 sum 5.483 5.715 10.012 12.766 Atomic orbital electron populations 1.22898 0.79054 1.01638 1.01448 1.86457 1.21381 1.35681 1.85740 1.23890 0.92243 0.80392 0.69973 1.90492 1.66612 1.36460 1.46154 1.20618 0.87153 0.85262 1.03563 1.43390 1.58105 1.08597 1.05344 1.19749 1.32611 1.08812 0.83843 0.87766 1.25228 0.94517 0.96720 1.00225 1.69596 1.33312 1.21243 1.28573 0.85791 0.77819 0.79454 0.80801 1.20261 1.20930 1.19384 1.19971 0.82593 0.87410 0.83644 1.90580 1.56638 1.68675 1.31710 1.20504 1.03193 0.96181 0.92832 1.19343 0.92198 0.93796 0.95321 1.20928 0.98942 1.01106 0.94888 1.20805 0.96012 0.98519 0.94760 1.21083 0.94919 1.07560 1.00421 1.18850 0.84385 0.96016 0.92494 1.86113 1.31704 1.75714 1.29157 1.22377 0.99565 0.93941 0.82246 1.21839 0.98360 1.00634 0.99685 1.22351 1.02918 0.95732 1.02555 1.20223 0.98426 1.04475 0.92791 0.89738 0.93306 0.92808 0.84904 0.90728 0.91611 0.88334 0.88788 0.86134 0.86303 0.85997 0.90927 0.91541 0.90786 0.91591 0.91326 0.91546 0.91789 0.85579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 10.56 101.05 1.07 1.87 16 2 O -0.38 -8.38 10.56 -39.24 -0.41 -8.80 16 3 C 0.49 12.54 5.88 36.00 0.21 12.76 16 4 O -0.51 -14.49 15.89 -18.76 -0.30 -14.79 16 5 C 0.16 3.90 5.21 -5.20 -0.03 3.87 16 6 N -0.43 -10.87 2.11 -116.10 -0.25 -11.11 16 7 C -0.32 -7.92 9.28 -14.93 -0.14 -8.06 16 8 H 0.10 2.34 6.42 -52.49 -0.34 2.00 16 9 C 0.04 0.87 5.28 -17.47 -0.09 0.78 16 10 N -0.89 -22.67 8.21 55.50 0.46 -22.21 16 11 Si 0.93 19.25 29.56 -169.99 -5.02 14.22 16 12 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 13 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 14 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 15 C 0.47 11.47 7.61 -10.99 -0.08 11.38 16 16 O -0.59 -15.75 15.68 5.54 0.09 -15.67 16 17 C -0.09 -1.71 4.28 -29.04 -0.12 -1.84 16 18 C -0.01 -0.11 4.38 -104.65 -0.46 -0.57 16 19 C -0.14 -2.43 9.70 -39.56 -0.38 -2.81 16 20 C -0.08 -1.24 10.04 -39.60 -0.40 -1.64 16 21 C -0.22 -3.20 8.36 -39.43 -0.33 -3.53 16 22 C 0.13 2.04 6.57 -39.22 -0.26 1.78 16 23 O -0.31 -4.56 9.80 -19.44 -0.19 -4.75 16 24 C 0.08 0.80 2.86 -26.74 -0.08 0.72 16 25 C -0.15 -1.27 9.56 37.16 0.36 -0.91 16 26 C -0.18 -1.59 9.26 37.15 0.34 -1.24 16 27 C -0.14 -2.48 9.64 -39.43 -0.38 -2.86 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.05 0.87 8.13 -51.93 -0.42 0.44 16 30 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 31 H 0.13 3.23 6.26 -51.93 -0.33 2.91 16 32 H 0.07 1.74 7.50 -51.93 -0.39 1.35 16 33 H 0.27 6.71 8.32 -40.82 -0.34 6.37 16 34 H 0.10 1.87 8.08 -51.93 -0.42 1.45 16 35 H 0.09 1.66 7.59 -51.93 -0.39 1.27 16 36 H 0.12 2.02 8.06 -52.48 -0.42 1.60 16 37 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.12 1.43 5.67 -52.49 -0.30 1.13 16 39 H 0.07 0.74 5.99 -51.93 -0.31 0.43 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.62 7.35 -51.93 -0.38 0.24 16 46 H 0.13 2.14 8.06 -52.49 -0.42 1.71 16 LS Contribution 384.06 15.07 5.79 5.79 Total: -1.00 -32.35 384.06 -7.25 -39.60 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -6.64 Total: 8.01 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -0.77 Total: 9.71 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.21 Total: -33.33 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -0.82 Total: -44.01 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.35 -7.25 -39.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120577071.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.716 kcal (2) G-P(sol) polarization free energy of solvation -32.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds