Wall clock time and date at job start Tue Mar 31 2020 19:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34222 * 117.00561 * 2 1 4 4 O 1.20836 * 119.99744 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00590 * 180.02562 * 3 2 1 6 6 N 1.46493 * 109.47423 * 179.97438 * 5 3 2 7 7 C 1.37103 * 120.00145 * 269.99623 * 6 5 3 8 8 H 1.07994 * 119.99829 * 197.26221 * 7 6 5 9 9 C 1.38946 * 119.99606 * 17.26341 * 7 6 5 10 10 N 1.31413 * 120.00116 * 4.36407 * 9 7 6 11 11 Si 1.86795 * 119.99969 * 184.36557 * 9 7 6 12 12 H 1.48505 * 109.47341 * 89.99852 * 11 9 7 13 13 H 1.48494 * 109.47437 * 209.99910 * 11 9 7 14 14 H 1.48504 * 109.47219 * 330.00207 * 11 9 7 15 15 C 1.34779 * 120.00275 * 89.99642 * 6 5 3 16 16 O 1.21301 * 119.99652 * 354.74017 * 15 6 5 17 17 C 1.50696 * 120.00188 * 174.73808 * 15 6 5 18 18 C 1.50701 * 109.47296 * 184.98287 * 17 15 6 19 19 C 1.38283 * 119.97317 * 270.02661 * 18 17 15 20 20 C 1.38246 * 120.11511 * 180.02562 * 19 18 17 21 21 C 1.38168 * 120.05294 * 359.67847 * 20 19 18 22 22 C 1.38711 * 119.94335 * 0.57361 * 21 20 19 23 23 O 1.35903 * 120.05774 * 179.72006 * 22 21 20 24 24 C 1.42898 * 116.99669 * 357.86298 * 23 22 21 25 25 C 1.52999 * 109.46862 * 155.97866 * 24 23 22 26 26 C 1.52992 * 109.47194 * 275.98089 * 24 23 22 27 27 C 1.38128 * 119.97487 * 89.99972 * 18 17 15 28 28 H 1.08998 * 109.47663 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47214 * 300.00494 * 1 2 3 30 30 H 1.09005 * 109.47148 * 59.99969 * 1 2 3 31 31 H 1.09000 * 109.47170 * 59.99117 * 5 3 2 32 32 H 1.09007 * 109.46587 * 299.99870 * 5 3 2 33 33 H 0.97003 * 119.99739 * 185.00484 * 10 9 7 34 34 H 1.08996 * 109.47239 * 64.98706 * 17 15 6 35 35 H 1.08996 * 109.47470 * 304.98256 * 17 15 6 36 36 H 1.08005 * 119.94440 * 359.97438 * 19 18 17 37 37 H 1.07996 * 119.97750 * 179.97438 * 20 19 18 38 38 H 1.07999 * 120.03277 * 180.29469 * 21 20 19 39 39 H 1.09003 * 109.47086 * 35.98595 * 24 23 22 40 40 H 1.08999 * 109.46997 * 60.00078 * 25 24 23 41 41 H 1.08999 * 109.47416 * 179.97438 * 25 24 23 42 42 H 1.09000 * 109.47697 * 300.00099 * 25 24 23 43 43 H 1.08999 * 109.47188 * 180.02562 * 26 24 23 44 44 H 1.08999 * 109.47031 * 300.00145 * 26 24 23 45 45 H 1.08994 * 109.47398 * 60.00073 * 26 24 23 46 46 H 1.08000 * 120.02073 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9818 2.6795 -0.0011 7 6 4.1758 3.3366 -1.1886 8 1 4.7379 4.2585 -1.2101 9 6 3.6493 2.8163 -2.3645 10 7 2.8937 1.7419 -2.3272 11 14 4.0156 3.6442 -3.9984 12 1 5.2486 3.0595 -4.5843 13 1 2.8770 3.4312 -4.9276 14 1 4.2126 5.1002 -3.7825 15 6 4.1733 3.3261 1.1659 16 8 3.9104 2.7758 2.2144 17 6 4.7141 4.7327 1.1681 18 6 4.9483 5.1787 2.5884 19 6 3.9384 5.8120 3.2891 20 6 4.1503 6.2228 4.5920 21 6 5.3702 5.9954 5.1995 22 6 6.3867 5.3650 4.4971 23 8 7.5894 5.1452 5.0905 24 6 7.7532 5.6315 6.4241 25 6 8.8460 4.8261 7.1299 26 6 8.1534 7.1076 6.3832 27 6 6.1715 4.9539 3.1894 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 3.9558 0.7807 -0.8907 32 1 3.9564 0.7804 0.8892 33 1 2.5859 1.3365 -3.1529 34 1 3.9949 5.3992 0.6920 35 1 5.6549 4.7612 0.6185 36 1 2.9826 5.9868 2.8175 37 1 3.3601 6.7176 5.1371 38 1 5.5338 6.3122 6.2190 39 1 6.8145 5.5244 6.9678 40 1 9.7846 4.9331 6.5863 41 1 8.9713 5.1973 8.1471 42 1 8.5609 3.7745 7.1591 43 1 8.2788 7.4784 7.4005 44 1 9.0921 7.2146 5.8395 45 1 7.3750 7.6813 5.8804 46 1 6.9600 4.4592 2.6417 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120577071.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:31 Heat of formation + Delta-G solvation = -139.645963 kcal Electronic energy + Delta-G solvation = -29230.554081 eV Core-core repulsion = 25085.752093 eV Total energy + Delta-G solvation = -4144.801989 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.46421 -41.14076 -40.18502 -38.64745 -37.25092 -36.47183 -34.17656 -33.60455 -33.37612 -30.85082 -30.46121 -28.67183 -28.08084 -27.62090 -26.30821 -23.82811 -23.47311 -22.24078 -21.34489 -20.91169 -19.28125 -18.50470 -18.42637 -18.06617 -17.27194 -17.07051 -16.92503 -16.89031 -16.39455 -16.13729 -15.99492 -15.59359 -15.11427 -14.91257 -14.64894 -14.36441 -14.23647 -14.10908 -13.85242 -13.57850 -13.27209 -13.23063 -13.10712 -13.04909 -12.87459 -12.74563 -12.67707 -12.53161 -12.43434 -12.32832 -12.11246 -12.03294 -11.68902 -11.56094 -11.48430 -11.39240 -10.92711 -10.56761 -9.91912 -9.71215 -9.07047 -8.31360 -5.97652 0.39072 0.55326 1.43623 1.49031 1.60094 1.73190 1.87687 2.21197 2.27179 2.36312 2.72759 3.07142 3.19100 3.81730 3.82896 3.94595 4.04345 4.08625 4.21847 4.25350 4.32069 4.35172 4.39169 4.41372 4.43405 4.55911 4.60558 4.71319 4.72044 4.74163 4.78448 4.84747 4.88580 4.91519 4.98204 5.14416 5.21051 5.29036 5.39445 5.41414 5.50695 5.65703 5.73834 5.75715 5.88398 6.34188 6.56297 7.07332 7.26807 7.47572 7.87264 8.71724 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014490 B = 0.002979 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.843602 B = 9395.404056 C =10330.587604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.377 6.377 3 C 0.495 3.505 4 O -0.548 6.548 5 C 0.157 3.843 6 N -0.445 5.445 7 C -0.340 4.340 8 H 0.121 0.879 9 C -0.008 4.008 10 N -0.911 5.911 11 Si 1.002 2.998 12 H -0.266 1.266 13 H -0.293 1.293 14 H -0.259 1.259 15 C 0.464 3.536 16 O -0.623 6.623 17 C -0.077 4.077 18 C -0.026 4.026 19 C -0.162 4.162 20 C -0.078 4.078 21 C -0.215 4.215 22 C 0.125 3.875 23 O -0.329 6.329 24 C 0.062 3.938 25 C -0.146 4.146 26 C -0.174 4.174 27 C -0.162 4.162 28 H 0.133 0.867 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.132 0.868 32 H 0.078 0.922 33 H 0.271 0.729 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.102 0.898 42 H 0.056 0.944 43 H 0.096 0.904 44 H 0.062 0.938 45 H 0.055 0.945 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.893 6.518 11.786 15.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.294 6.294 3 C 0.339 3.661 4 O -0.437 6.437 5 C 0.031 3.969 6 N -0.164 5.164 7 C -0.467 4.467 8 H 0.139 0.861 9 C -0.207 4.207 10 N -0.552 5.552 11 Si 0.826 3.174 12 H -0.191 1.191 13 H -0.220 1.220 14 H -0.183 1.183 15 C 0.254 3.746 16 O -0.511 6.511 17 C -0.116 4.116 18 C -0.026 4.026 19 C -0.180 4.180 20 C -0.096 4.096 21 C -0.233 4.233 22 C 0.080 3.920 23 O -0.244 6.244 24 C 0.007 3.993 25 C -0.203 4.203 26 C -0.231 4.231 27 C -0.181 4.181 28 H 0.151 0.849 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.149 0.851 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.136 0.864 37 H 0.169 0.831 38 H 0.172 0.828 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.121 0.879 42 H 0.075 0.925 43 H 0.114 0.886 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.575 6.364 12.077 15.152 hybrid contribution -0.678 0.056 -1.173 1.356 sum 5.897 6.420 10.903 13.960 Atomic orbital electron populations 1.23263 0.76459 1.04743 1.01016 1.86422 1.23900 1.33997 1.85082 1.23998 0.92560 0.80613 0.68974 1.90457 1.67441 1.37747 1.48082 1.20645 0.87075 0.85708 1.03466 1.43642 1.58017 1.08791 1.05965 1.20207 1.33057 1.09553 0.83867 0.86139 1.26126 0.94125 0.97162 1.03331 1.69696 1.34018 1.22398 1.29084 0.84766 0.77392 0.78970 0.76281 1.19121 1.21975 1.18305 1.20747 0.82030 0.88860 0.82923 1.90533 1.57995 1.69828 1.32694 1.20423 1.03562 0.93207 0.94453 1.19307 0.93141 0.95224 0.94936 1.21082 0.98651 1.02090 0.96222 1.21169 0.97051 0.97525 0.93845 1.21436 0.94059 1.06174 1.01620 1.18940 0.85367 0.95570 0.92134 1.86109 1.31019 1.76016 1.31215 1.22784 1.00682 0.95347 0.80493 1.21881 0.97463 0.99945 1.00993 1.22329 1.02333 0.94276 1.04142 1.20289 0.98245 1.05524 0.94032 0.84856 0.93270 0.93754 0.85097 0.90437 0.91822 0.88041 0.87287 0.86447 0.83092 0.82838 0.90219 0.91701 0.87892 0.92520 0.88575 0.91918 0.92622 0.86060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.37 10.56 113.37 1.20 2.57 16 2 O -0.38 -16.93 10.56 -51.34 -0.54 -17.47 16 3 C 0.49 25.76 5.88 71.24 0.42 26.18 16 4 O -0.55 -31.88 15.89 21.93 0.35 -31.53 16 5 C 0.16 7.90 5.21 85.63 0.45 8.34 16 6 N -0.45 -22.80 2.11 -639.61 -1.35 -24.15 16 7 C -0.34 -16.82 9.28 84.04 0.78 -16.04 16 8 H 0.12 5.38 6.42 -2.91 -0.02 5.36 16 9 C -0.01 -0.40 5.28 84.93 0.45 0.05 16 10 N -0.91 -47.18 8.21 21.66 0.18 -47.00 16 11 Si 1.00 39.18 29.56 68.60 2.03 41.21 16 12 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 13 H -0.29 -11.87 7.11 99.48 0.71 -11.17 16 14 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 15 C 0.46 23.05 7.61 87.66 0.67 23.72 16 16 O -0.62 -34.32 15.68 -3.09 -0.05 -34.37 16 17 C -0.08 -3.09 4.28 29.10 0.12 -2.96 16 18 C -0.03 -0.96 4.38 -19.88 -0.09 -1.05 16 19 C -0.16 -5.61 9.70 22.28 0.22 -5.39 16 20 C -0.08 -2.20 10.04 22.25 0.22 -1.98 16 21 C -0.21 -5.78 8.36 22.37 0.19 -5.59 16 22 C 0.13 3.93 6.57 22.51 0.15 4.08 16 23 O -0.33 -9.32 9.80 -92.46 -0.91 -10.23 16 24 C 0.06 1.19 2.86 30.59 0.09 1.27 16 25 C -0.15 -2.18 9.56 71.98 0.69 -1.49 16 26 C -0.17 -2.64 9.26 71.98 0.67 -1.97 16 27 C -0.16 -5.81 9.64 22.37 0.22 -5.60 16 28 H 0.13 3.36 8.14 -2.39 -0.02 3.34 16 29 H 0.05 1.73 8.13 -2.39 -0.02 1.71 16 30 H 0.04 1.64 8.13 -2.38 -0.02 1.62 16 31 H 0.13 6.57 6.26 -2.39 -0.01 6.56 16 32 H 0.08 3.76 7.50 -2.38 -0.02 3.75 16 33 H 0.27 13.51 8.32 -92.71 -0.77 12.74 16 34 H 0.10 3.93 8.08 -2.39 -0.02 3.91 16 35 H 0.11 3.92 7.59 -2.39 -0.02 3.90 16 36 H 0.12 4.01 8.06 -2.91 -0.02 3.99 16 37 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 38 H 0.15 3.07 5.67 -2.91 -0.02 3.06 16 39 H 0.08 1.39 5.99 -2.39 -0.01 1.38 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.05 0.95 7.35 -2.39 -0.02 0.93 16 46 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -71.40 384.06 7.12 -64.28 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: 0.99 Total: 35.12 kcal Atomic # 6 Polarization: 17.71 SS G_CDS: 6.43 Total: 24.13 kcal Atomic # 7 Polarization: -69.98 SS G_CDS: -1.17 Total: -71.15 kcal Atomic # 8 Polarization: -92.45 SS G_CDS: -1.15 Total: -93.60 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.21 kcal Total: -71.40 7.12 -64.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120577071.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.362 kcal (2) G-P(sol) polarization free energy of solvation -71.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds