Wall clock time and date at job start Tue Mar 31 2020 19:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47309 * 2 1 4 4 O 1.42897 * 109.47200 * 179.97438 * 3 2 1 5 5 C 1.35900 * 117.00239 * 180.02562 * 4 3 2 6 6 C 1.38760 * 120.05188 * 359.72554 * 5 4 3 7 7 C 1.38120 * 119.94346 * 179.69968 * 6 5 4 8 8 C 1.38286 * 120.05420 * 0.59706 * 7 6 5 9 9 C 1.38242 * 120.11141 * 359.67676 * 8 7 6 10 10 C 1.50701 * 119.97308 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.47545 * 269.98376 * 10 9 8 12 12 O 1.21300 * 119.99857 * 354.79301 * 11 10 9 13 13 N 1.34775 * 120.00672 * 174.79333 * 11 10 9 14 14 C 1.37103 * 119.99705 * 5.01620 * 13 11 10 15 15 H 1.07997 * 119.99534 * 22.99307 * 14 13 11 16 16 C 1.38948 * 119.99999 * 202.99915 * 14 13 11 17 17 N 1.31414 * 119.99669 * 351.25562 * 16 14 13 18 18 Si 1.86794 * 119.99970 * 171.25739 * 16 14 13 19 19 H 1.48494 * 109.47395 * 59.99753 * 18 16 14 20 20 H 1.48507 * 109.47084 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47151 * 299.99830 * 18 16 14 22 22 C 1.46499 * 120.00418 * 185.01671 * 13 11 10 23 23 C 1.50698 * 109.47173 * 89.99512 * 22 13 11 24 24 O 1.20827 * 119.99962 * 0.02562 * 23 22 13 25 25 O 1.34227 * 120.00232 * 180.02562 * 23 22 13 26 26 C 1.45195 * 117.00282 * 180.02562 * 25 23 22 27 27 C 1.38165 * 120.05846 * 0.02574 * 9 8 7 28 28 H 1.08994 * 109.46865 * 60.00050 * 1 2 3 29 29 H 1.09005 * 109.46946 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47067 * 299.99737 * 1 2 3 31 31 H 1.09001 * 109.47042 * 240.00144 * 2 1 3 32 32 H 1.09002 * 109.47072 * 120.00557 * 2 1 3 33 33 H 1.09003 * 109.46523 * 59.99774 * 3 2 1 34 34 H 1.08994 * 109.46707 * 300.00146 * 3 2 1 35 35 H 1.07999 * 120.02825 * 359.97438 * 6 5 4 36 36 H 1.08004 * 119.97459 * 180.30411 * 7 6 5 37 37 H 1.07997 * 119.94538 * 179.70543 * 8 7 6 38 38 H 1.08999 * 109.46866 * 29.98045 * 10 9 8 39 39 H 1.09000 * 109.47140 * 149.98070 * 10 9 8 40 40 H 0.96998 * 119.99898 * 185.00985 * 17 16 14 41 41 H 1.09000 * 109.47259 * 210.00073 * 22 13 11 42 42 H 1.09009 * 109.46798 * 329.99629 * 22 13 11 43 43 H 1.09008 * 109.47142 * 180.02562 * 26 25 23 44 44 H 1.09005 * 109.46723 * 299.99157 * 26 25 23 45 45 H 1.08999 * 109.47388 * 59.99720 * 26 25 23 46 46 H 1.07995 * 120.03033 * 180.02562 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0861 2.6533 0.0012 6 6 3.3315 3.8178 -0.0045 7 6 3.9609 5.0472 0.0024 8 6 5.3419 5.1182 0.0026 9 6 6.0960 3.9596 0.0025 10 6 7.6008 4.0406 0.0033 11 6 8.1032 4.0677 -1.4172 12 8 7.3258 3.9304 -2.3382 13 7 9.4162 4.2445 -1.6645 14 6 10.3085 4.2967 -0.6249 15 1 10.0598 3.8437 0.3234 16 6 11.5328 4.9324 -0.7914 17 7 11.9087 5.3316 -1.9857 18 14 12.6442 5.2195 0.6822 19 1 12.9981 3.9149 1.2969 20 1 13.8825 5.9105 0.2411 21 1 11.9358 6.0609 1.6800 22 6 9.8900 4.3809 -3.0440 23 6 9.8777 5.8354 -3.4379 24 8 9.5113 6.6723 -2.6472 25 8 10.2739 6.2013 -4.6671 26 6 10.2363 7.6193 -4.9769 27 6 5.4712 2.7273 0.0018 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9562 -0.8899 35 1 2.2529 3.7628 -0.0099 36 1 3.3740 5.9539 0.0029 37 1 5.8322 6.0805 0.0032 38 1 7.9154 4.9489 0.5173 39 1 8.0112 3.1715 0.5173 40 1 12.7927 5.7094 -2.1148 41 1 10.9057 3.9925 -3.1195 42 1 9.2356 3.8185 -3.7102 43 1 10.5805 7.7771 -5.9992 44 1 9.2147 7.9860 -4.8773 45 1 10.8852 8.1593 -4.2873 46 1 6.0607 1.8224 0.0022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123640778.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:35 Heat of formation + Delta-G solvation = -128.814416 kcal Electronic energy + Delta-G solvation = -28960.404895 eV Core-core repulsion = 24816.072598 eV Total energy + Delta-G solvation = -4144.332297 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.01132 -39.40098 -38.43132 -37.27281 -35.40916 -34.53203 -34.08385 -32.12377 -31.53590 -29.90761 -28.77054 -27.16369 -26.56713 -25.91430 -24.46056 -22.46494 -21.93259 -20.93943 -20.09911 -19.23066 -17.75276 -16.79300 -16.55743 -16.32712 -16.16334 -15.98323 -15.67142 -15.40760 -15.16514 -14.43245 -14.35163 -14.22063 -14.13095 -13.64633 -13.47910 -12.90425 -12.88835 -12.51117 -12.43302 -12.37628 -12.28332 -12.18884 -11.52284 -11.40187 -11.32632 -11.29932 -11.19900 -11.19116 -10.92751 -10.81827 -10.61810 -10.59474 -10.50155 -10.41257 -9.80174 -9.51436 -8.99852 -8.75062 -8.33928 -7.95181 -7.86471 -6.45152 -4.08355 1.66773 1.80674 3.08876 3.17525 3.18428 3.24246 3.51596 3.74951 3.99747 4.09906 4.10954 4.66100 4.67142 4.80603 4.98675 5.01234 5.05813 5.11148 5.18472 5.23469 5.40486 5.43268 5.67167 5.68686 5.71803 5.71956 5.79336 5.81669 5.87857 5.94136 5.96874 6.10638 6.14569 6.28067 6.31029 6.47262 6.55562 6.59474 6.74742 6.91492 7.04543 7.10077 7.30545 7.50599 7.64280 7.65964 8.24130 8.96989 9.15432 9.35917 9.76239 10.56321 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015060 B = 0.002792 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.749708 B =10027.254373 C =10902.604384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.060 3.940 4 O -0.318 6.318 5 C 0.124 3.876 6 C -0.219 4.219 7 C -0.083 4.083 8 C -0.142 4.142 9 C -0.006 4.006 10 C -0.087 4.087 11 C 0.477 3.523 12 O -0.593 6.593 13 N -0.435 5.435 14 C -0.327 4.327 15 H 0.103 0.897 16 C 0.042 3.958 17 N -0.885 5.885 18 Si 0.933 3.067 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.154 3.846 23 C 0.491 3.509 24 O -0.515 6.515 25 O -0.373 6.373 26 C 0.044 3.956 27 C -0.136 4.136 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.274 0.726 41 H 0.138 0.862 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.048 0.952 45 H 0.053 0.947 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.422 -4.149 2.815 13.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.016 4.016 4 O -0.233 6.233 5 C 0.080 3.920 6 C -0.238 4.238 7 C -0.102 4.102 8 C -0.160 4.160 9 C -0.007 4.007 10 C -0.127 4.127 11 C 0.266 3.734 12 O -0.478 6.478 13 N -0.154 5.154 14 C -0.454 4.454 15 H 0.120 0.880 16 C -0.161 4.161 17 N -0.525 5.525 18 Si 0.759 3.241 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.197 1.197 22 C 0.029 3.971 23 C 0.333 3.667 24 O -0.401 6.401 25 O -0.291 6.291 26 C -0.051 4.051 27 C -0.155 4.155 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.119 0.881 39 H 0.111 0.889 40 H 0.085 0.915 41 H 0.156 0.844 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.664 -3.979 2.521 13.511 hybrid contribution 0.660 0.830 0.667 1.252 sum -12.004 -3.149 3.188 12.813 Atomic orbital electron populations 1.21686 0.94455 1.02362 1.02139 1.21484 0.95835 0.95146 1.03722 1.22790 0.79155 0.98410 1.01200 1.86027 1.20703 1.27440 1.89087 1.18859 0.92117 0.83722 0.97312 1.21061 0.99297 0.92560 1.10834 1.20806 0.94495 0.96657 0.98197 1.20953 0.93579 0.98277 1.03224 1.19352 0.95001 0.92104 0.94236 1.20501 0.90386 1.04801 0.96991 1.20013 0.81929 0.81304 0.90136 1.90574 1.55408 1.55553 1.46272 1.43317 1.04817 1.62435 1.04877 1.19630 0.97760 1.34679 0.93359 0.87971 1.25295 0.98576 0.94436 0.97775 1.69598 1.20516 1.41165 1.21209 0.85901 0.78755 0.78735 0.80689 1.19819 1.20901 1.19719 1.20636 1.03438 0.88662 0.84360 1.23996 0.71152 0.93500 0.78021 1.90492 1.45388 1.53343 1.50918 1.86466 1.80073 1.26783 1.35732 1.22913 1.01305 0.80509 1.00371 1.20213 0.91018 0.98214 1.06031 0.92395 0.91843 0.92453 0.90795 0.90888 0.92333 0.92241 0.86226 0.86256 0.86044 0.88145 0.88933 0.91527 0.84434 0.90571 0.89651 0.93274 0.92809 0.85565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.12 -1.08 6.30 -26.73 -0.17 -1.25 16 3 C 0.06 0.64 4.74 37.16 0.18 0.82 16 4 O -0.32 -4.74 10.14 -19.42 -0.20 -4.94 16 5 C 0.12 2.04 6.69 -39.22 -0.26 1.78 16 6 C -0.22 -3.24 9.04 -39.43 -0.36 -3.59 16 7 C -0.08 -1.27 10.04 -39.61 -0.40 -1.67 16 8 C -0.14 -2.50 9.70 -39.56 -0.38 -2.89 16 9 C -0.01 -0.12 4.38 -104.65 -0.46 -0.58 16 10 C -0.09 -1.73 4.38 -29.04 -0.13 -1.86 16 11 C 0.48 11.54 7.61 -10.99 -0.08 11.45 16 12 O -0.59 -15.74 15.60 5.54 0.09 -15.65 16 13 N -0.44 -10.87 2.11 -116.09 -0.25 -11.12 16 14 C -0.33 -8.01 9.00 -14.93 -0.13 -8.14 16 15 H 0.10 2.30 6.72 -52.49 -0.35 1.94 16 16 C 0.04 1.04 5.41 -17.47 -0.09 0.94 16 17 N -0.88 -22.47 8.21 55.50 0.46 -22.02 16 18 Si 0.93 19.36 29.57 -169.99 -5.03 14.33 16 19 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 C 0.15 3.77 5.29 -5.20 -0.03 3.75 16 23 C 0.49 12.33 5.92 36.00 0.21 12.55 16 24 O -0.52 -14.30 15.94 -18.75 -0.30 -14.59 16 25 O -0.37 -8.24 10.56 -39.25 -0.41 -8.66 16 26 C 0.04 0.78 10.56 101.05 1.07 1.84 16 27 C -0.14 -2.44 9.64 -39.44 -0.38 -2.82 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.56 7.67 -51.93 -0.40 0.16 16 34 H 0.06 0.61 7.65 -51.93 -0.40 0.21 16 35 H 0.12 1.42 6.30 -52.49 -0.33 1.09 16 36 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 37 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 38 H 0.10 1.95 7.97 -51.93 -0.41 1.54 16 39 H 0.09 1.64 7.69 -51.93 -0.40 1.25 16 40 H 0.27 6.73 8.32 -40.82 -0.34 6.39 16 41 H 0.14 3.36 6.28 -51.93 -0.33 3.04 16 42 H 0.08 1.79 7.36 -51.92 -0.38 1.41 16 43 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 44 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 45 H 0.05 0.98 8.13 -51.93 -0.42 0.56 16 46 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 387.31 15.07 5.84 5.84 Total: -1.00 -31.87 387.31 -7.64 -39.51 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.79 Total: 7.55 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: -1.05 Total: 9.74 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.21 Total: -33.13 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: -0.82 Total: -43.84 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.87 -7.64 -39.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123640778.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.302 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds