Wall clock time and date at job start Tue Mar 31 2020 18:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.47185 * 2 1 4 4 C 1.42902 * 114.00459 * 175.64198 * 3 2 1 5 5 H 1.09006 * 109.46788 * 330.12324 * 4 3 2 6 6 C 1.53001 * 109.47395 * 210.13015 * 4 3 2 7 7 C 1.52997 * 109.47165 * 60.41986 * 6 4 3 8 8 C 1.50699 * 109.47106 * 90.12323 * 4 3 2 9 9 O 1.20823 * 120.00061 * 5.00953 * 8 4 3 10 10 O 1.34228 * 119.99788 * 185.00328 * 8 4 3 11 11 C 1.45201 * 116.99884 * 180.02562 * 10 8 4 12 12 C 1.50703 * 109.47033 * 180.02562 * 11 10 8 13 13 O 1.21286 * 120.00166 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99644 * 179.97438 * 12 11 10 15 15 C 1.39245 * 119.99415 * 184.17343 * 14 12 11 16 16 C 1.39482 * 119.82851 * 214.01633 * 15 14 12 17 17 C 1.36377 * 120.16737 * 179.76273 * 16 15 14 18 18 C 1.40871 * 119.82456 * 0.51195 * 17 16 15 19 19 C 1.41157 * 120.16045 * 179.71934 * 18 17 16 20 20 H 1.08003 * 119.99786 * 158.11632 * 19 18 17 21 21 C 1.39902 * 119.99974 * 338.11181 * 19 18 17 22 22 N 1.30869 * 120.00313 * 331.21439 * 21 19 18 23 23 Si 1.86801 * 119.99787 * 151.21802 * 21 19 18 24 24 H 1.48506 * 109.47029 * 94.98172 * 23 21 19 25 25 H 1.48495 * 109.47205 * 214.98302 * 23 21 19 26 26 H 1.48498 * 109.46998 * 334.98480 * 23 21 19 27 27 C 1.40866 * 119.67408 * 359.74616 * 18 17 16 28 28 C 1.36375 * 119.82992 * 359.97438 * 27 18 17 29 29 H 1.08998 * 109.47393 * 59.99367 * 1 2 3 30 30 H 1.09007 * 109.47194 * 299.99852 * 1 2 3 31 31 H 1.08994 * 109.47534 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47448 * 120.00078 * 2 1 3 33 33 H 1.09002 * 109.47098 * 240.00889 * 2 1 3 34 34 H 1.08997 * 109.46862 * 180.42188 * 6 4 3 35 35 H 1.08995 * 109.46698 * 300.42265 * 6 4 3 36 36 H 1.09000 * 109.47401 * 294.73105 * 7 6 4 37 37 H 1.09003 * 109.47408 * 54.73304 * 7 6 4 38 38 H 1.09003 * 109.46717 * 174.72932 * 7 6 4 39 39 H 1.08997 * 109.46791 * 299.99695 * 11 10 8 40 40 H 1.08991 * 109.47446 * 60.00016 * 11 10 8 41 41 H 0.96997 * 120.00315 * 4.17286 * 14 12 11 42 42 H 1.07996 * 119.92070 * 0.02562 * 16 15 14 43 43 H 1.07997 * 120.08834 * 180.25976 * 17 16 15 44 44 H 0.96998 * 120.00245 * 179.97438 * 22 21 19 45 45 H 1.08004 * 120.08712 * 179.97438 * 27 18 17 46 46 H 1.07998 * 119.91894 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4273 1.4615 0.0992 5 1 3.8213 0.6155 0.6624 6 6 3.7854 2.7638 0.8180 7 6 3.1840 2.7518 2.2248 8 6 4.0283 1.4687 -1.2827 9 8 3.3098 1.4760 -2.2540 10 8 5.3620 1.4670 -1.4345 11 6 5.8707 1.4749 -2.7945 12 6 7.3775 1.4711 -2.7672 13 8 7.9648 1.4631 -1.7061 14 7 8.0723 1.4766 -3.9221 15 6 9.4615 1.3854 -3.8990 16 6 10.2170 2.0574 -4.8598 17 6 11.5782 1.9768 -4.8409 18 6 12.2206 1.2035 -3.8540 19 6 13.6289 1.1103 -3.8313 20 1 14.1372 0.8358 -2.9188 21 6 14.3661 1.3734 -4.9909 22 7 13.8363 1.1537 -6.1672 23 14 16.1068 2.0384 -4.8601 24 1 17.0731 0.9126 -4.9269 25 1 16.3633 2.9780 -5.9809 26 1 16.2680 2.7530 -3.5683 27 6 11.4506 0.5233 -2.8903 28 6 10.0904 0.6181 -2.9186 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 4.8694 2.8544 0.8870 35 1 3.3849 3.6093 0.2589 36 1 2.0963 2.7556 2.1550 37 1 3.5112 1.8558 2.7523 38 1 3.5163 3.6357 2.7694 39 1 5.5150 0.5889 -3.3204 40 1 5.5185 2.3688 -3.3090 41 1 7.6046 1.5441 -4.7692 42 1 9.7229 2.6466 -5.6182 43 1 12.1621 2.5010 -5.5829 44 1 14.3473 1.3365 -6.9711 45 1 11.9361 -0.0718 -2.1309 46 1 9.4986 0.0968 -2.1807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139846830.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:29 Heat of formation + Delta-G solvation = -152.421437 kcal Electronic energy + Delta-G solvation = -27757.588062 eV Core-core repulsion = 23612.232087 eV Total energy + Delta-G solvation = -4145.355975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.96486 -39.64865 -38.51271 -37.29812 -36.34135 -34.52212 -34.30577 -33.11540 -31.23835 -30.04818 -29.56099 -28.65211 -27.29558 -24.79599 -23.35105 -22.58737 -21.83261 -21.17464 -20.78357 -19.82412 -18.29636 -17.80504 -17.41075 -17.09892 -16.72122 -16.38435 -16.07148 -15.39867 -15.23028 -15.06467 -14.60591 -14.35751 -14.09271 -13.96879 -13.41976 -13.08043 -12.93092 -12.80717 -12.70018 -12.66808 -12.37086 -12.16274 -12.11884 -11.98365 -11.76902 -11.53788 -11.47516 -11.17638 -11.13758 -11.00038 -10.96372 -10.90492 -10.58762 -10.20489 -9.95890 -9.79766 -9.53293 -9.17107 -8.77373 -7.60373 -7.16065 -6.91465 -4.32234 1.89305 2.08386 2.46354 2.89716 3.02775 3.04961 3.09236 3.17590 3.29606 3.63856 3.86593 4.33759 4.47870 4.48568 4.50846 4.67658 4.81329 4.84823 4.94148 4.98614 4.99462 4.99702 5.11738 5.28650 5.39874 5.54330 5.63873 5.67294 5.70536 5.76527 5.96042 6.10149 6.14632 6.35263 6.58256 6.68723 6.86246 6.96065 7.08434 7.22203 7.47514 7.51956 7.62304 7.81885 7.97023 8.18652 8.20716 8.50046 8.63618 8.80110 8.93120 10.00972 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.030857 B = 0.001812 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.192753 B =15448.720055 C =15869.163934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 O -0.351 6.351 4 C 0.106 3.894 5 H 0.103 0.897 6 C -0.117 4.117 7 C -0.147 4.147 8 C 0.435 3.565 9 O -0.495 6.495 10 O -0.327 6.327 11 C 0.051 3.949 12 C 0.497 3.503 13 O -0.511 6.511 14 N -0.642 5.642 15 C -0.020 4.020 16 C -0.103 4.103 17 C -0.166 4.166 18 C 0.111 3.889 19 C -0.461 4.461 20 H 0.082 0.918 21 C 0.084 3.916 22 N -0.774 5.774 23 Si 0.900 3.100 24 H -0.269 1.269 25 H -0.274 1.274 26 H -0.258 1.258 27 C -0.221 4.221 28 C -0.068 4.068 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.396 0.604 42 H 0.091 0.909 43 H 0.112 0.888 44 H 0.283 0.717 45 H 0.096 0.904 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.261 0.129 8.353 21.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.026 4.026 3 O -0.269 6.269 4 C 0.046 3.954 5 H 0.120 0.880 6 C -0.155 4.155 7 C -0.204 4.204 8 C 0.277 3.723 9 O -0.382 6.382 10 O -0.242 6.242 11 C -0.027 4.027 12 C 0.282 3.718 13 O -0.386 6.386 14 N -0.287 5.287 15 C -0.112 4.112 16 C -0.123 4.123 17 C -0.186 4.186 18 C 0.108 3.892 19 C -0.488 4.488 20 H 0.100 0.900 21 C -0.137 4.137 22 N -0.397 5.397 23 Si 0.723 3.277 24 H -0.195 1.195 25 H -0.199 1.199 26 H -0.181 1.181 27 C -0.241 4.241 28 C -0.088 4.088 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.230 0.770 42 H 0.109 0.891 43 H 0.130 0.870 44 H 0.094 0.906 45 H 0.114 0.886 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -20.145 0.257 8.542 21.883 hybrid contribution 0.640 0.019 -0.946 1.142 sum -19.505 0.276 7.596 20.933 Atomic orbital electron populations 1.21713 0.93120 1.02450 1.03305 1.22693 0.96240 0.83223 1.00493 1.88040 1.17843 1.27189 1.93810 1.21715 0.82510 1.02420 0.88732 0.87987 1.21637 1.02655 0.94495 0.96672 1.21693 1.01635 1.02178 0.94891 1.24762 0.80879 0.72965 0.93738 1.90674 1.61720 1.44427 1.41380 1.86569 1.23399 1.83423 1.30854 1.22740 0.93216 1.04721 0.82016 1.19881 0.87768 0.79029 0.85107 1.90738 1.70310 1.47831 1.29757 1.42765 1.06516 1.72005 1.07392 1.17025 0.79689 1.09978 1.04510 1.20156 0.94499 0.99451 0.98178 1.20692 0.92272 1.03282 1.02343 1.17631 0.93170 0.88273 0.90115 1.19552 0.91563 1.41052 0.96682 0.90014 1.25954 1.00773 0.92354 0.94609 1.69911 1.39146 1.31638 0.99044 0.86437 0.81797 0.79807 0.79613 1.19453 1.19883 1.18124 1.20594 0.92634 1.06670 1.04240 1.20247 0.94681 0.96912 0.96953 0.91583 0.91746 0.90896 0.92788 0.92944 0.88649 0.90449 0.91816 0.92506 0.91918 0.88414 0.88378 0.76994 0.89129 0.87004 0.90592 0.88626 0.88048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.15 0.38 -0.59 16 2 C 0.05 0.40 6.51 37.15 0.24 0.64 16 3 O -0.35 -3.59 8.97 -55.14 -0.49 -4.09 16 4 C 0.11 1.04 2.68 -27.88 -0.07 0.97 16 5 H 0.10 0.80 7.72 -51.93 -0.40 0.40 16 6 C -0.12 -1.01 5.65 -26.73 -0.15 -1.16 16 7 C -0.15 -1.01 9.70 37.16 0.36 -0.65 16 8 C 0.44 5.53 7.24 36.00 0.26 5.79 16 9 O -0.50 -7.34 16.26 -25.46 -0.41 -7.75 16 10 O -0.33 -4.58 9.75 -45.90 -0.45 -5.03 16 11 C 0.05 0.67 5.95 36.01 0.21 0.88 16 12 C 0.50 8.58 7.65 -10.98 -0.08 8.50 16 13 O -0.51 -11.00 14.17 -14.11 -0.20 -11.20 16 14 N -0.64 -11.05 5.31 -9.74 -0.05 -11.10 16 15 C -0.02 -0.45 6.28 -83.57 -0.52 -0.97 16 16 C -0.10 -2.31 9.89 -39.79 -0.39 -2.70 16 17 C -0.17 -4.19 8.71 -39.26 -0.34 -4.53 16 18 C 0.11 2.93 5.58 -106.80 -0.60 2.34 16 19 C -0.46 -12.02 8.97 -37.85 -0.34 -12.36 16 20 H 0.08 2.06 7.99 -52.48 -0.42 1.64 16 21 C 0.08 2.05 4.88 -17.34 -0.08 1.96 16 22 N -0.77 -19.28 11.51 55.55 0.64 -18.64 16 23 Si 0.90 18.02 29.64 -169.99 -5.04 12.98 16 24 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 25 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 26 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 27 C -0.22 -5.57 9.74 -39.26 -0.38 -5.96 16 28 C -0.07 -1.62 8.57 -39.79 -0.34 -1.96 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.34 7.99 -51.93 -0.41 -0.08 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.45 7.85 -51.93 -0.41 0.04 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 1.10 8.13 -51.93 -0.42 0.68 16 40 H 0.10 1.10 8.13 -51.93 -0.42 0.68 16 41 H 0.40 5.25 8.81 -40.82 -0.36 4.89 16 42 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.11 2.86 6.38 -52.49 -0.33 2.53 16 44 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 45 H 0.10 2.29 8.06 -52.48 -0.42 1.86 16 46 H 0.10 2.37 6.42 -52.49 -0.34 2.04 16 LS Contribution 394.17 15.07 5.94 5.94 Total: -1.00 -31.90 394.17 -8.80 -40.71 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -6.88 Total: 7.97 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -1.85 Total: -9.79 kcal Atomic # 7 Polarization: -30.33 SS G_CDS: 0.59 Total: -29.74 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -1.56 Total: -28.06 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.04 Total: 12.98 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.90 -8.80 -40.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139846830.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.714 kcal (2) G-P(sol) polarization free energy of solvation -31.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds