Wall clock time and date at job start Tue Mar 31 2020 18:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.47185 * 2 1 4 4 C 1.42902 * 114.00459 * 175.64198 * 3 2 1 5 5 H 1.09006 * 109.46788 * 330.12324 * 4 3 2 6 6 C 1.53001 * 109.47395 * 210.13015 * 4 3 2 7 7 C 1.52997 * 109.47165 * 60.41986 * 6 4 3 8 8 C 1.50699 * 109.47106 * 90.12323 * 4 3 2 9 9 O 1.20823 * 120.00061 * 5.00953 * 8 4 3 10 10 O 1.34228 * 119.99788 * 185.00328 * 8 4 3 11 11 C 1.45201 * 116.99884 * 180.02562 * 10 8 4 12 12 C 1.50703 * 109.47033 * 180.02562 * 11 10 8 13 13 O 1.21286 * 120.00166 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99644 * 179.97438 * 12 11 10 15 15 C 1.39245 * 119.99415 * 184.17343 * 14 12 11 16 16 C 1.39482 * 119.82851 * 214.01633 * 15 14 12 17 17 C 1.36377 * 120.16737 * 179.76273 * 16 15 14 18 18 C 1.40871 * 119.82456 * 0.51195 * 17 16 15 19 19 C 1.41157 * 120.16045 * 179.71934 * 18 17 16 20 20 H 1.08003 * 119.99786 * 158.11632 * 19 18 17 21 21 C 1.39902 * 119.99974 * 338.11181 * 19 18 17 22 22 N 1.30869 * 120.00313 * 331.21439 * 21 19 18 23 23 Si 1.86801 * 119.99787 * 151.21802 * 21 19 18 24 24 H 1.48506 * 109.47029 * 94.98172 * 23 21 19 25 25 H 1.48495 * 109.47205 * 214.98302 * 23 21 19 26 26 H 1.48498 * 109.46998 * 334.98480 * 23 21 19 27 27 C 1.40866 * 119.67408 * 359.74616 * 18 17 16 28 28 C 1.36375 * 119.82992 * 359.97438 * 27 18 17 29 29 H 1.08998 * 109.47393 * 59.99367 * 1 2 3 30 30 H 1.09007 * 109.47194 * 299.99852 * 1 2 3 31 31 H 1.08994 * 109.47534 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47448 * 120.00078 * 2 1 3 33 33 H 1.09002 * 109.47098 * 240.00889 * 2 1 3 34 34 H 1.08997 * 109.46862 * 180.42188 * 6 4 3 35 35 H 1.08995 * 109.46698 * 300.42265 * 6 4 3 36 36 H 1.09000 * 109.47401 * 294.73105 * 7 6 4 37 37 H 1.09003 * 109.47408 * 54.73304 * 7 6 4 38 38 H 1.09003 * 109.46717 * 174.72932 * 7 6 4 39 39 H 1.08997 * 109.46791 * 299.99695 * 11 10 8 40 40 H 1.08991 * 109.47446 * 60.00016 * 11 10 8 41 41 H 0.96997 * 120.00315 * 4.17286 * 14 12 11 42 42 H 1.07996 * 119.92070 * 0.02562 * 16 15 14 43 43 H 1.07997 * 120.08834 * 180.25976 * 17 16 15 44 44 H 0.96998 * 120.00245 * 179.97438 * 22 21 19 45 45 H 1.08004 * 120.08712 * 179.97438 * 27 18 17 46 46 H 1.07998 * 119.91894 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4273 1.4615 0.0992 5 1 3.8213 0.6155 0.6624 6 6 3.7854 2.7638 0.8180 7 6 3.1840 2.7518 2.2248 8 6 4.0283 1.4687 -1.2827 9 8 3.3098 1.4760 -2.2540 10 8 5.3620 1.4670 -1.4345 11 6 5.8707 1.4749 -2.7945 12 6 7.3775 1.4711 -2.7672 13 8 7.9648 1.4631 -1.7061 14 7 8.0723 1.4766 -3.9221 15 6 9.4615 1.3854 -3.8990 16 6 10.2170 2.0574 -4.8598 17 6 11.5782 1.9768 -4.8409 18 6 12.2206 1.2035 -3.8540 19 6 13.6289 1.1103 -3.8313 20 1 14.1372 0.8358 -2.9188 21 6 14.3661 1.3734 -4.9909 22 7 13.8363 1.1537 -6.1672 23 14 16.1068 2.0384 -4.8601 24 1 17.0731 0.9126 -4.9269 25 1 16.3633 2.9780 -5.9809 26 1 16.2680 2.7530 -3.5683 27 6 11.4506 0.5233 -2.8903 28 6 10.0904 0.6181 -2.9186 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 4.8694 2.8544 0.8870 35 1 3.3849 3.6093 0.2589 36 1 2.0963 2.7556 2.1550 37 1 3.5112 1.8558 2.7523 38 1 3.5163 3.6357 2.7694 39 1 5.5150 0.5889 -3.3204 40 1 5.5185 2.3688 -3.3090 41 1 7.6046 1.5441 -4.7692 42 1 9.7229 2.6466 -5.6182 43 1 12.1621 2.5010 -5.5829 44 1 14.3473 1.3365 -6.9711 45 1 11.9361 -0.0718 -2.1309 46 1 9.4986 0.0968 -2.1807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139846830.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:28 Heat of formation + Delta-G solvation = -169.684736 kcal Electronic energy + Delta-G solvation = -27758.336655 eV Core-core repulsion = 23612.232087 eV Total energy + Delta-G solvation = -4146.104567 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.00289 -41.10431 -39.44299 -38.93782 -37.44855 -36.21937 -34.96512 -34.84988 -31.81344 -31.62963 -31.35685 -30.02549 -28.25483 -26.51744 -24.01848 -23.61592 -23.21979 -22.65404 -21.97798 -21.38969 -19.37770 -19.20213 -18.92920 -18.17960 -17.80967 -17.58907 -17.35389 -16.99568 -16.37500 -15.93476 -15.81280 -15.62658 -15.30503 -15.02094 -14.90839 -14.49093 -14.14365 -14.06729 -13.96529 -13.76482 -13.45911 -13.34331 -13.29400 -13.02099 -12.91263 -12.82829 -12.71491 -12.35490 -12.34938 -12.10962 -11.98015 -11.92510 -11.78760 -11.73643 -11.59941 -11.23017 -10.89388 -10.71451 -10.52267 -9.50057 -8.99746 -8.73040 -6.25384 0.74490 0.92301 1.09357 1.12198 1.36004 1.40923 1.53678 1.69848 2.19920 2.30619 2.55985 2.65448 3.47070 3.58055 3.70981 3.73242 3.81619 3.98091 4.00014 4.12654 4.25700 4.33275 4.37593 4.44023 4.45714 4.47933 4.78721 4.81239 4.88990 5.00559 5.05417 5.08647 5.11803 5.14326 5.15010 5.25253 5.25447 5.39942 5.41345 5.62161 5.82798 5.90187 5.99343 6.05931 6.33244 6.50125 6.60113 6.64819 6.88476 6.95790 7.27161 8.22038 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.030857 B = 0.001812 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.192753 B =15448.720055 C =15869.163934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.042 3.958 3 O -0.364 6.364 4 C 0.106 3.894 5 H 0.124 0.876 6 C -0.115 4.115 7 C -0.142 4.142 8 C 0.438 3.562 9 O -0.519 6.519 10 O -0.341 6.341 11 C 0.058 3.942 12 C 0.501 3.499 13 O -0.556 6.556 14 N -0.634 5.634 15 C -0.006 4.006 16 C -0.101 4.101 17 C -0.185 4.185 18 C 0.081 3.919 19 C -0.500 4.500 20 H 0.075 0.925 21 C 0.048 3.952 22 N -0.802 5.802 23 Si 0.974 3.026 24 H -0.260 1.260 25 H -0.261 1.261 26 H -0.262 1.262 27 C -0.241 4.241 28 C -0.079 4.079 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.420 0.580 42 H 0.126 0.874 43 H 0.103 0.897 44 H 0.294 0.706 45 H 0.094 0.906 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.569 0.528 8.310 23.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.034 4.034 3 O -0.282 6.282 4 C 0.046 3.954 5 H 0.141 0.859 6 C -0.153 4.153 7 C -0.199 4.199 8 C 0.281 3.719 9 O -0.407 6.407 10 O -0.257 6.257 11 C -0.019 4.019 12 C 0.288 3.712 13 O -0.434 6.434 14 N -0.280 5.280 15 C -0.099 4.099 16 C -0.120 4.120 17 C -0.205 4.205 18 C 0.078 3.922 19 C -0.528 4.528 20 H 0.093 0.907 21 C -0.171 4.171 22 N -0.426 5.426 23 Si 0.795 3.205 24 H -0.185 1.185 25 H -0.185 1.185 26 H -0.186 1.186 27 C -0.262 4.262 28 C -0.099 4.099 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.059 0.941 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.257 0.743 42 H 0.144 0.856 43 H 0.121 0.879 44 H 0.105 0.895 45 H 0.112 0.888 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -21.501 0.649 8.472 23.120 hybrid contribution 0.871 -0.144 -0.914 1.271 sum -20.630 0.505 7.558 21.977 Atomic orbital electron populations 1.21729 0.92105 1.03573 1.02918 1.22901 0.97153 0.82408 1.00967 1.88036 1.17913 1.28578 1.93696 1.21920 0.82431 1.03782 0.87220 0.85887 1.21641 1.02493 0.93649 0.97509 1.21667 1.01389 1.03051 0.93811 1.25388 0.80073 0.71815 0.94622 1.90659 1.61955 1.45742 1.42384 1.86572 1.24302 1.83601 1.31246 1.22710 0.89704 1.07115 0.82400 1.20555 0.89503 0.77076 0.84072 1.90727 1.71671 1.49581 1.31408 1.42634 1.04718 1.71757 1.08930 1.17075 0.82003 1.07895 1.02946 1.20438 0.93693 0.99123 0.98791 1.20720 0.93547 1.03857 1.02347 1.17955 0.93891 0.89230 0.91102 1.19755 0.92055 1.43568 0.97423 0.90663 1.26729 1.04836 0.91779 0.93721 1.69912 1.41073 1.31821 0.99819 0.85321 0.76426 0.79270 0.79528 1.18488 1.18529 1.18557 1.20722 0.93497 1.07334 1.04600 1.20367 0.94268 0.97565 0.97710 0.92900 0.91161 0.89048 0.90641 0.94088 0.88992 0.91182 0.91968 0.91564 0.91162 0.85948 0.85866 0.74280 0.85639 0.87928 0.89527 0.88826 0.87984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.28 71.98 0.74 -0.93 16 2 C 0.04 0.60 6.51 71.98 0.47 1.07 16 3 O -0.36 -6.93 8.97 -129.95 -1.17 -8.09 16 4 C 0.11 1.92 2.68 29.85 0.08 2.00 16 5 H 0.12 1.68 7.72 -2.38 -0.02 1.66 16 6 C -0.12 -1.83 5.65 30.59 0.17 -1.66 16 7 C -0.14 -1.69 9.70 71.98 0.70 -1.00 16 8 C 0.44 10.49 7.24 71.24 0.52 11.00 16 9 O -0.52 -14.63 16.26 28.39 0.46 -14.17 16 10 O -0.34 -9.01 9.75 -45.04 -0.44 -9.45 16 11 C 0.06 1.37 5.95 71.24 0.42 1.79 16 12 C 0.50 16.45 7.65 87.66 0.67 17.12 16 13 O -0.56 -23.65 14.17 15.75 0.22 -23.43 16 14 N -0.63 -20.47 5.31 -303.10 -1.61 -22.08 16 15 C -0.01 -0.27 6.28 38.56 0.24 -0.03 16 16 C -0.10 -4.42 9.89 22.14 0.22 -4.20 16 17 C -0.18 -9.46 8.71 22.48 0.20 -9.26 16 18 C 0.08 4.43 5.58 -21.28 -0.12 4.31 16 19 C -0.50 -27.06 8.97 23.39 0.21 -26.85 16 20 H 0.08 3.99 7.99 -2.91 -0.02 3.97 16 21 C 0.05 2.37 4.88 85.24 0.42 2.79 16 22 N -0.80 -40.37 11.51 21.82 0.25 -40.12 16 23 Si 0.97 37.12 29.64 68.60 2.03 39.15 16 24 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 25 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 26 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 27 C -0.24 -12.62 9.74 22.48 0.22 -12.40 16 28 C -0.08 -3.82 8.57 22.13 0.19 -3.63 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 0.76 7.99 -2.39 -0.02 0.74 16 33 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.06 0.77 7.85 -2.39 -0.02 0.75 16 37 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.12 2.38 8.13 -2.39 -0.02 2.36 16 40 H 0.12 2.37 8.13 -2.39 -0.02 2.35 16 41 H 0.42 9.77 8.81 -92.71 -0.82 8.96 16 42 H 0.13 4.56 8.06 -2.91 -0.02 4.53 16 43 H 0.10 5.35 6.38 -2.91 -0.02 5.34 16 44 H 0.29 13.13 8.30 -92.71 -0.77 12.36 16 45 H 0.09 4.73 8.06 -2.91 -0.02 4.71 16 46 H 0.10 4.85 6.42 -2.91 -0.02 4.84 16 Total: -1.00 -70.75 394.17 5.27 -65.48 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: 0.18 Total: 32.62 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: 5.34 Total: -19.90 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: -1.36 Total: -62.21 kcal Atomic # 8 Polarization: -54.23 SS G_CDS: -0.92 Total: -55.15 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.15 kcal Total: -70.75 5.27 -65.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139846830.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.210 kcal (2) G-P(sol) polarization free energy of solvation -70.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds