Wall clock time and date at job start Tue Mar 31 2020 19:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.67529 * 2 1 4 4 C 1.53295 * 109.68736 * 239.44255 * 2 1 3 5 5 O 1.42964 * 109.22214 * 187.97714 * 4 2 1 6 6 C 1.42962 * 114.16818 * 62.57708 * 5 4 2 7 7 H 1.09001 * 109.51144 * 57.34443 * 6 5 4 8 8 C 1.53000 * 109.50970 * 177.44551 * 6 5 4 9 9 O 1.42907 * 109.46945 * 294.99767 * 8 6 5 10 10 C 1.53710 * 109.14942 * 297.28812 * 6 5 4 11 11 N 1.47153 * 109.67796 * 120.51042 * 2 1 3 12 12 C 1.34771 * 120.98761 * 350.24223 * 11 2 1 13 13 O 1.21285 * 119.99637 * 4.50546 * 12 11 2 14 14 C 1.50697 * 120.00459 * 184.50848 * 12 11 2 15 15 C 1.50696 * 109.47337 * 179.97438 * 14 12 11 16 16 C 1.38322 * 119.96585 * 269.97709 * 15 14 12 17 17 C 1.38284 * 120.14072 * 180.02562 * 16 15 14 18 18 C 1.38119 * 120.06887 * 359.74981 * 17 16 15 19 19 C 1.38859 * 119.92891 * 0.49979 * 18 17 16 20 20 O 1.35748 * 120.07294 * 179.76805 * 19 18 17 21 21 C 1.34834 * 116.99728 * 5.22852 * 20 19 18 22 22 H 1.08001 * 119.99572 * 354.88335 * 21 20 19 23 23 C 1.38655 * 120.00200 * 174.88163 * 21 20 19 24 24 N 1.31556 * 119.99549 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00194 * 179.72264 * 23 21 20 26 26 H 1.48493 * 109.47286 * 180.27605 * 25 23 21 27 27 H 1.48507 * 109.46824 * 300.27787 * 25 23 21 28 28 H 1.48500 * 109.47104 * 60.27344 * 25 23 21 29 29 C 1.38077 * 119.96857 * 89.99910 * 15 14 12 30 30 H 1.08995 * 109.47803 * 305.48939 * 1 2 3 31 31 H 1.09002 * 109.46968 * 65.49627 * 1 2 3 32 32 H 1.09003 * 109.46585 * 185.48499 * 1 2 3 33 33 H 1.09005 * 109.50869 * 307.89798 * 4 2 1 34 34 H 1.08995 * 109.50999 * 68.04866 * 4 2 1 35 35 H 1.09000 * 109.47713 * 54.99919 * 8 6 5 36 36 H 1.09002 * 109.47151 * 175.00238 * 8 6 5 37 37 H 0.96705 * 113.99970 * 179.97438 * 9 8 6 38 38 H 1.09004 * 109.83946 * 292.86013 * 10 6 5 39 39 H 1.08994 * 109.74722 * 172.16531 * 10 6 5 40 40 H 1.09002 * 109.47387 * 59.99754 * 14 12 11 41 41 H 1.08998 * 109.47093 * 300.00069 * 14 12 11 42 42 H 1.08008 * 119.93249 * 0.02562 * 16 15 14 43 43 H 1.07997 * 119.96686 * 179.97438 * 17 16 15 44 44 H 1.08001 * 120.03743 * 180.27752 * 18 17 16 45 45 H 0.96991 * 120.00443 * 359.71836 * 24 23 21 46 46 H 1.08002 * 120.03142 * 0.02562 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0263 0.0000 4 6 2.0464 -0.7338 -1.2429 5 8 3.4637 -0.8915 -1.1414 6 6 3.8860 -1.6894 -0.0329 7 1 3.4211 -2.6734 -0.0946 8 6 5.4082 -1.8406 -0.0627 9 8 5.7911 -2.5773 -1.2258 10 6 3.4647 -0.9995 1.2744 11 7 2.0255 -0.7035 1.1937 12 6 1.1870 -1.0611 2.1864 13 8 -0.0060 -0.8775 2.0680 14 6 1.7316 -1.6892 3.4433 15 6 0.5960 -1.9914 4.3867 16 6 0.1946 -1.0437 5.3108 17 6 -0.8467 -1.3175 6.1785 18 6 -1.4928 -2.5369 6.1214 19 6 -1.0888 -3.4924 5.1983 20 8 -1.7186 -4.6936 5.1428 21 6 -2.7971 -4.8565 5.9355 22 1 -3.0743 -4.0824 6.6357 23 6 -3.5502 -6.0177 5.8516 24 7 -3.2121 -6.9607 4.9989 25 14 -5.0397 -6.2467 6.9553 26 1 -5.6640 -7.5650 6.6770 27 1 -4.6155 -6.1900 8.3773 28 1 -6.0238 -5.1669 6.6890 29 6 -0.0425 -3.2143 4.3280 30 1 -0.3634 0.5966 0.8367 31 1 -0.3633 0.4262 -0.9351 32 1 -0.3632 -1.0230 0.0982 33 1 1.5748 -1.7143 -1.3089 34 1 1.8074 -0.1533 -2.1339 35 1 5.8710 -0.8540 -0.0888 36 1 5.7380 -2.3730 0.8294 37 1 6.7451 -2.7113 -1.3102 38 1 4.0238 -0.0722 1.4002 39 1 3.6565 -1.6617 2.1186 40 1 2.4274 -0.9999 3.9219 41 1 2.2514 -2.6136 3.1918 42 1 0.6955 -0.0878 5.3548 43 1 -1.1575 -0.5756 6.8992 44 1 -2.3089 -2.7485 6.7963 45 1 -2.4385 -6.8420 4.4260 46 1 0.2718 -3.9541 3.6067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156916590.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:49 Heat of formation + Delta-G solvation = -116.070632 kcal Electronic energy + Delta-G solvation = -29100.150811 eV Core-core repulsion = 24956.371126 eV Total energy + Delta-G solvation = -4143.779685 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.88744 -39.24228 -38.58747 -37.00252 -36.57092 -34.94291 -33.76982 -32.33304 -31.87403 -30.13032 -29.12838 -27.13146 -26.62271 -25.45450 -24.78480 -22.82268 -21.86357 -21.65042 -20.85683 -19.30847 -18.06926 -17.78279 -17.29571 -16.87422 -16.78125 -16.19898 -15.93446 -15.36182 -15.19654 -15.00511 -14.94238 -14.39943 -14.12188 -13.87217 -13.79497 -13.62589 -13.33871 -13.20753 -12.99036 -12.79168 -12.50989 -12.46925 -12.13243 -11.76524 -11.62049 -11.37018 -11.22788 -11.08523 -11.05261 -10.85143 -10.74501 -10.56755 -10.35924 -10.27411 -10.25870 -9.39528 -9.13103 -8.74898 -8.68887 -8.11109 -7.27305 -6.73564 -4.02890 2.02052 2.33823 2.60643 2.69754 3.25572 3.28371 3.30904 3.47297 3.67988 4.13847 4.31472 4.39167 4.56077 4.62618 4.66472 4.78195 4.82387 4.85768 4.90041 5.01561 5.03426 5.06723 5.17062 5.22665 5.30918 5.35952 5.42878 5.49921 5.58077 5.63031 5.69269 5.87426 6.01267 6.11815 6.16081 6.28326 6.50271 6.59790 6.77696 6.84481 7.11243 7.17846 7.22554 7.22851 7.34519 7.59065 7.74175 8.18068 8.43681 8.95996 9.65018 10.70574 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016162 B = 0.002515 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.040095 B =11130.474883 C =11480.703484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.111 3.889 3 H 0.077 0.923 4 C 0.050 3.950 5 O -0.368 6.368 6 C 0.075 3.925 7 H 0.073 0.927 8 C 0.086 3.914 9 O -0.565 6.565 10 C 0.082 3.918 11 N -0.622 5.622 12 C 0.519 3.481 13 O -0.504 6.504 14 C -0.095 4.095 15 C -0.032 4.032 16 C -0.194 4.194 17 C -0.074 4.074 18 C -0.226 4.226 19 C 0.158 3.842 20 O -0.204 6.204 21 C -0.471 4.471 22 H 0.083 0.917 23 C 0.009 3.991 24 N -0.883 5.883 25 Si 1.096 2.904 26 H -0.273 1.273 27 H -0.281 1.281 28 H -0.281 1.281 29 C -0.176 4.176 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.106 0.894 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.381 0.619 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.127 0.873 45 H 0.281 0.719 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.790 13.758 -8.584 24.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.008 3.992 3 H 0.095 0.905 4 C -0.027 4.027 5 O -0.287 6.287 6 C 0.016 3.984 7 H 0.091 0.909 8 C 0.008 3.992 9 O -0.370 6.370 10 C -0.042 4.042 11 N -0.359 5.359 12 C 0.308 3.692 13 O -0.378 6.378 14 C -0.135 4.135 15 C -0.033 4.033 16 C -0.213 4.213 17 C -0.092 4.092 18 C -0.246 4.246 19 C 0.105 3.895 20 O -0.109 6.109 21 C -0.547 4.547 22 H 0.101 0.899 23 C -0.196 4.196 24 N -0.515 5.515 25 Si 0.920 3.080 26 H -0.198 1.198 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.196 4.196 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.124 0.876 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.228 0.772 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.121 0.879 43 H 0.126 0.874 44 H 0.145 0.855 45 H 0.091 0.909 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 15.371 12.616 -8.615 21.672 hybrid contribution 1.777 1.185 -0.025 2.136 sum 17.148 13.801 -8.640 23.647 Atomic orbital electron populations 1.22143 0.91531 1.04552 1.01292 1.21980 0.96867 0.95734 0.84604 0.90483 1.23140 0.81200 1.00585 0.97779 1.87999 1.21924 1.71408 1.47360 1.22562 0.94528 0.94868 0.86422 0.90898 1.22076 0.92788 0.95933 0.88449 1.86548 1.28685 1.76898 1.44872 1.22373 0.81857 1.01473 0.98449 1.48221 1.07613 1.59960 1.20099 1.20744 0.86531 0.78007 0.83962 1.90813 1.15172 1.52434 1.79360 1.20674 0.98086 1.01893 0.92821 1.18631 0.95626 0.93698 0.95346 1.20353 1.01808 0.98768 1.00409 1.20696 0.95033 0.95855 0.97652 1.21192 1.04712 0.95119 1.03544 1.19112 0.91835 0.85650 0.92903 1.83662 1.40029 1.27689 1.59493 1.22191 1.05155 1.07721 1.19662 0.89948 1.26523 1.02218 0.90782 1.00039 1.70567 1.27376 1.33530 1.20029 0.83113 0.73510 0.77054 0.74356 1.19796 1.20752 1.20755 1.19906 0.99794 0.97739 1.02146 0.90190 0.93518 0.90895 0.92359 0.87595 0.92455 0.91639 0.77175 0.90227 0.88245 0.88371 0.88502 0.87887 0.87357 0.85497 0.90861 0.87094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 7.62 37.16 0.28 -1.43 16 2 C 0.11 1.20 3.68 -67.42 -0.25 0.95 16 3 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 4 C 0.05 0.50 6.29 37.31 0.23 0.74 16 5 O -0.37 -4.02 10.35 -39.97 -0.41 -4.43 16 6 C 0.08 0.68 3.07 -26.36 -0.08 0.59 16 7 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 8 C 0.09 0.57 6.72 37.16 0.25 0.82 16 9 O -0.56 -4.63 13.63 -39.97 -0.54 -5.18 16 10 C 0.08 0.65 5.84 -3.31 -0.02 0.63 16 11 N -0.62 -7.00 3.01 -164.49 -0.50 -7.50 16 12 C 0.52 7.45 7.60 -10.99 -0.08 7.37 16 13 O -0.50 -9.27 11.59 5.55 0.06 -9.21 16 14 C -0.10 -1.24 4.26 -29.04 -0.12 -1.36 16 15 C -0.03 -0.58 4.37 -104.65 -0.46 -1.04 16 16 C -0.19 -3.48 9.70 -39.53 -0.38 -3.87 16 17 C -0.07 -1.43 10.04 -39.61 -0.40 -1.83 16 18 C -0.23 -5.17 9.17 -39.40 -0.36 -5.53 16 19 C 0.16 3.96 6.65 -39.10 -0.26 3.70 16 20 O -0.20 -5.92 9.16 0.04 0.00 -5.92 16 21 C -0.47 -13.62 9.49 30.89 0.29 -13.33 16 22 H 0.08 2.24 5.20 -52.49 -0.27 1.97 16 23 C 0.01 0.27 5.49 -17.52 -0.10 0.17 16 24 N -0.88 -26.90 13.70 55.48 0.76 -26.14 16 25 Si 1.10 24.21 29.92 -169.99 -5.09 19.13 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 28 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 29 C -0.18 -3.83 9.65 -39.39 -0.38 -4.21 16 30 H 0.08 1.16 6.70 -51.93 -0.35 0.81 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 1.10 6.89 -51.93 -0.36 0.74 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.38 1.22 9.12 45.56 0.42 1.63 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.61 6.07 -51.93 -0.32 0.30 16 40 H 0.10 0.98 8.08 -51.93 -0.42 0.56 16 41 H 0.10 1.07 7.43 -51.93 -0.39 0.69 16 42 H 0.10 1.56 8.06 -52.48 -0.42 1.13 16 43 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 44 H 0.13 2.92 5.64 -52.49 -0.30 2.62 16 45 H 0.28 8.78 7.97 -40.82 -0.33 8.45 16 46 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 374.70 15.07 5.65 5.65 Total: -1.00 -36.74 374.70 -7.65 -44.39 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -5.75 Total: 6.85 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -1.83 Total: -17.63 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.26 Total: -33.64 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.89 Total: -24.74 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -5.09 Total: 19.13 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.74 -7.65 -44.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156916590.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.680 kcal (2) G-P(sol) polarization free energy of solvation -36.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds