Wall clock time and date at job start Tue Mar 31 2020 19:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.67529 * 2 1 4 4 C 1.53295 * 109.68736 * 239.44255 * 2 1 3 5 5 O 1.42964 * 109.22214 * 187.97714 * 4 2 1 6 6 C 1.42962 * 114.16818 * 62.57708 * 5 4 2 7 7 H 1.09001 * 109.51144 * 57.34443 * 6 5 4 8 8 C 1.53000 * 109.50970 * 177.44551 * 6 5 4 9 9 O 1.42907 * 109.46945 * 294.99767 * 8 6 5 10 10 C 1.53710 * 109.14942 * 297.28812 * 6 5 4 11 11 N 1.47153 * 109.67796 * 120.51042 * 2 1 3 12 12 C 1.34771 * 120.98761 * 350.24223 * 11 2 1 13 13 O 1.21285 * 119.99637 * 4.50546 * 12 11 2 14 14 C 1.50697 * 120.00459 * 184.50848 * 12 11 2 15 15 C 1.50696 * 109.47337 * 179.97438 * 14 12 11 16 16 C 1.38322 * 119.96585 * 269.97709 * 15 14 12 17 17 C 1.38284 * 120.14072 * 180.02562 * 16 15 14 18 18 C 1.38119 * 120.06887 * 359.74981 * 17 16 15 19 19 C 1.38859 * 119.92891 * 0.49979 * 18 17 16 20 20 O 1.35748 * 120.07294 * 179.76805 * 19 18 17 21 21 C 1.34834 * 116.99728 * 5.22852 * 20 19 18 22 22 H 1.08001 * 119.99572 * 354.88335 * 21 20 19 23 23 C 1.38655 * 120.00200 * 174.88163 * 21 20 19 24 24 N 1.31556 * 119.99549 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00194 * 179.72264 * 23 21 20 26 26 H 1.48493 * 109.47286 * 180.27605 * 25 23 21 27 27 H 1.48507 * 109.46824 * 300.27787 * 25 23 21 28 28 H 1.48500 * 109.47104 * 60.27344 * 25 23 21 29 29 C 1.38077 * 119.96857 * 89.99910 * 15 14 12 30 30 H 1.08995 * 109.47803 * 305.48939 * 1 2 3 31 31 H 1.09002 * 109.46968 * 65.49627 * 1 2 3 32 32 H 1.09003 * 109.46585 * 185.48499 * 1 2 3 33 33 H 1.09005 * 109.50869 * 307.89798 * 4 2 1 34 34 H 1.08995 * 109.50999 * 68.04866 * 4 2 1 35 35 H 1.09000 * 109.47713 * 54.99919 * 8 6 5 36 36 H 1.09002 * 109.47151 * 175.00238 * 8 6 5 37 37 H 0.96705 * 113.99970 * 179.97438 * 9 8 6 38 38 H 1.09004 * 109.83946 * 292.86013 * 10 6 5 39 39 H 1.08994 * 109.74722 * 172.16531 * 10 6 5 40 40 H 1.09002 * 109.47387 * 59.99754 * 14 12 11 41 41 H 1.08998 * 109.47093 * 300.00069 * 14 12 11 42 42 H 1.08008 * 119.93249 * 0.02562 * 16 15 14 43 43 H 1.07997 * 119.96686 * 179.97438 * 17 16 15 44 44 H 1.08001 * 120.03743 * 180.27752 * 18 17 16 45 45 H 0.96991 * 120.00443 * 359.71836 * 24 23 21 46 46 H 1.08002 * 120.03142 * 0.02562 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0263 0.0000 4 6 2.0464 -0.7338 -1.2429 5 8 3.4637 -0.8915 -1.1414 6 6 3.8860 -1.6894 -0.0329 7 1 3.4211 -2.6734 -0.0946 8 6 5.4082 -1.8406 -0.0627 9 8 5.7911 -2.5773 -1.2258 10 6 3.4647 -0.9995 1.2744 11 7 2.0255 -0.7035 1.1937 12 6 1.1870 -1.0611 2.1864 13 8 -0.0060 -0.8775 2.0680 14 6 1.7316 -1.6892 3.4433 15 6 0.5960 -1.9914 4.3867 16 6 0.1946 -1.0437 5.3108 17 6 -0.8467 -1.3175 6.1785 18 6 -1.4928 -2.5369 6.1214 19 6 -1.0888 -3.4924 5.1983 20 8 -1.7186 -4.6936 5.1428 21 6 -2.7971 -4.8565 5.9355 22 1 -3.0743 -4.0824 6.6357 23 6 -3.5502 -6.0177 5.8516 24 7 -3.2121 -6.9607 4.9989 25 14 -5.0397 -6.2467 6.9553 26 1 -5.6640 -7.5650 6.6770 27 1 -4.6155 -6.1900 8.3773 28 1 -6.0238 -5.1669 6.6890 29 6 -0.0425 -3.2143 4.3280 30 1 -0.3634 0.5966 0.8367 31 1 -0.3633 0.4262 -0.9351 32 1 -0.3632 -1.0230 0.0982 33 1 1.5748 -1.7143 -1.3089 34 1 1.8074 -0.1533 -2.1339 35 1 5.8710 -0.8540 -0.0888 36 1 5.7380 -2.3730 0.8294 37 1 6.7451 -2.7113 -1.3102 38 1 4.0238 -0.0722 1.4002 39 1 3.6565 -1.6617 2.1186 40 1 2.4274 -0.9999 3.9219 41 1 2.2514 -2.6136 3.1918 42 1 0.6955 -0.0878 5.3548 43 1 -1.1575 -0.5756 6.8992 44 1 -2.3089 -2.7485 6.7963 45 1 -2.4385 -6.8420 4.4260 46 1 0.2718 -3.9541 3.6067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156916590.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:48 Heat of formation + Delta-G solvation = -144.296843 kcal Electronic energy + Delta-G solvation = -29101.374791 eV Core-core repulsion = 24956.371126 eV Total energy + Delta-G solvation = -4145.003666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.85686 -40.85996 -39.68528 -38.37901 -37.50410 -35.88727 -34.74575 -34.30768 -33.19579 -31.13670 -30.72053 -28.47184 -27.49084 -26.84539 -26.13491 -23.90277 -23.33573 -22.67660 -22.28607 -20.45027 -19.75514 -18.72756 -18.40014 -18.05622 -17.66372 -17.20039 -17.08765 -16.74384 -16.57688 -16.07536 -15.93698 -15.67607 -15.59197 -15.26666 -15.14365 -14.86670 -14.74622 -14.32181 -14.09852 -13.94809 -13.63859 -13.42459 -13.06358 -12.98967 -12.89779 -12.68962 -12.47556 -12.42154 -12.36721 -12.15531 -12.05422 -11.94803 -11.80843 -11.33050 -11.30704 -10.92240 -10.78507 -10.26331 -9.71071 -9.57931 -9.08732 -8.96011 -6.26630 0.42706 0.66895 1.46189 1.55084 1.59166 1.76816 1.77641 2.34223 2.60942 2.79830 3.06551 3.16175 3.27367 3.54984 3.64449 3.75796 3.92750 3.97408 4.01513 4.09337 4.15529 4.21624 4.22627 4.30207 4.35771 4.46414 4.50387 4.52669 4.54747 4.59269 4.64919 4.66760 4.74278 4.87207 4.95880 5.02329 5.18854 5.20750 5.23209 5.51212 5.59258 5.66831 5.69102 6.03130 6.03834 6.23798 6.30506 6.85097 6.93973 7.13716 7.61399 8.48460 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016162 B = 0.002515 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.040095 B =11130.474883 C =11480.703484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.112 3.888 3 H 0.097 0.903 4 C 0.054 3.946 5 O -0.381 6.381 6 C 0.067 3.933 7 H 0.049 0.951 8 C 0.086 3.914 9 O -0.595 6.595 10 C 0.080 3.920 11 N -0.617 5.617 12 C 0.516 3.484 13 O -0.557 6.557 14 C -0.092 4.092 15 C -0.023 4.023 16 C -0.175 4.175 17 C -0.073 4.073 18 C -0.244 4.244 19 C 0.114 3.886 20 O -0.255 6.255 21 C -0.488 4.488 22 H 0.090 0.910 23 C -0.046 4.046 24 N -0.918 5.918 25 Si 1.145 2.855 26 H -0.272 1.272 27 H -0.257 1.257 28 H -0.262 1.262 29 C -0.191 4.191 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.126 0.874 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.400 0.600 38 H 0.108 0.892 39 H 0.123 0.877 40 H 0.146 0.854 41 H 0.119 0.881 42 H 0.150 0.850 43 H 0.147 0.853 44 H 0.116 0.884 45 H 0.258 0.742 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.541 17.147 -7.809 27.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.009 3.991 3 H 0.115 0.885 4 C -0.023 4.023 5 O -0.300 6.300 6 C 0.008 3.992 7 H 0.068 0.932 8 C 0.008 3.992 9 O -0.404 6.404 10 C -0.042 4.042 11 N -0.352 5.352 12 C 0.305 3.695 13 O -0.435 6.435 14 C -0.132 4.132 15 C -0.024 4.024 16 C -0.193 4.193 17 C -0.091 4.091 18 C -0.264 4.264 19 C 0.065 3.935 20 O -0.163 6.163 21 C -0.564 4.564 22 H 0.107 0.893 23 C -0.241 4.241 24 N -0.553 5.553 25 Si 0.961 3.039 26 H -0.197 1.197 27 H -0.181 1.181 28 H -0.187 1.187 29 C -0.211 4.211 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.143 0.857 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.251 0.749 38 H 0.126 0.874 39 H 0.141 0.859 40 H 0.164 0.836 41 H 0.137 0.863 42 H 0.167 0.833 43 H 0.164 0.836 44 H 0.133 0.867 45 H 0.067 0.933 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 18.229 16.064 -7.854 25.535 hybrid contribution 1.208 0.426 -0.385 1.338 sum 19.437 16.490 -8.239 26.788 Atomic orbital electron populations 1.21951 0.93130 1.02043 1.01464 1.22032 0.95506 0.96790 0.84754 0.88481 1.23120 0.81067 0.99858 0.98266 1.87994 1.21872 1.71623 1.48467 1.22765 0.96288 0.93646 0.86484 0.93245 1.22193 0.90871 0.97065 0.89032 1.86488 1.30798 1.77291 1.45844 1.22669 0.79646 1.03255 0.98607 1.48260 1.08927 1.58757 1.19276 1.20929 0.86089 0.77655 0.84818 1.90825 1.17333 1.54826 1.80514 1.20793 0.96755 1.04145 0.91458 1.19161 0.95895 0.91736 0.95581 1.20995 1.00177 0.99989 0.98132 1.21153 0.94642 0.94873 0.98412 1.21316 1.05264 0.96464 1.03322 1.19750 0.93181 0.85594 0.94994 1.83637 1.41259 1.30241 1.61187 1.22588 1.05628 1.08216 1.19941 0.89250 1.28432 1.04827 0.90270 1.00619 1.70707 1.27593 1.34900 1.22105 0.82596 0.70227 0.77490 0.73633 1.19673 1.18138 1.18721 1.20197 0.99643 0.99556 1.01685 0.92284 0.91388 0.94328 0.94236 0.85659 0.90932 0.88860 0.74905 0.87443 0.85918 0.83640 0.86340 0.83255 0.83571 0.86657 0.93320 0.87713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 7.62 71.98 0.55 -2.64 16 2 C 0.11 2.20 3.68 44.96 0.17 2.37 16 3 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 4 C 0.05 1.02 6.29 72.08 0.45 1.47 16 5 O -0.38 -7.52 10.35 -144.45 -1.49 -9.01 16 6 C 0.07 1.04 3.07 30.83 0.09 1.13 16 7 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 8 C 0.09 0.85 6.72 71.98 0.48 1.33 16 9 O -0.60 -8.53 13.63 -144.45 -1.97 -10.50 16 10 C 0.08 0.94 5.84 86.49 0.51 1.45 16 11 N -0.62 -12.23 3.01 -792.72 -2.39 -14.62 16 12 C 0.52 13.66 7.60 87.66 0.67 14.33 16 13 O -0.56 -20.35 11.59 -3.04 -0.04 -20.38 16 14 C -0.09 -2.05 4.26 29.10 0.12 -1.92 16 15 C -0.02 -0.78 4.37 -19.88 -0.09 -0.87 16 16 C -0.17 -5.56 9.70 22.30 0.22 -5.34 16 17 C -0.07 -2.63 10.04 22.25 0.22 -2.40 16 18 C -0.24 -11.34 9.17 22.39 0.21 -11.14 16 19 C 0.11 5.99 6.65 22.58 0.15 6.14 16 20 O -0.26 -15.93 9.16 -22.76 -0.21 -16.14 16 21 C -0.49 -29.84 9.49 67.92 0.64 -29.20 16 22 H 0.09 5.11 5.20 -2.91 -0.02 5.09 16 23 C -0.05 -2.73 5.49 84.83 0.47 -2.27 16 24 N -0.92 -59.46 13.70 21.61 0.30 -59.16 16 25 Si 1.15 49.85 29.92 68.60 2.05 51.90 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 27 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 28 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 29 C -0.19 -8.50 9.65 22.39 0.22 -8.29 16 30 H 0.06 1.71 6.70 -2.39 -0.02 1.69 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.04 1.21 6.89 -2.39 -0.02 1.19 16 33 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.40 1.68 9.12 -74.05 -0.68 1.01 16 38 H 0.11 0.77 8.14 -2.39 -0.02 0.76 16 39 H 0.12 0.86 6.07 -2.39 -0.01 0.85 16 40 H 0.15 1.91 8.08 -2.39 -0.02 1.89 16 41 H 0.12 2.18 7.43 -2.39 -0.02 2.16 16 42 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 43 H 0.15 4.13 8.06 -2.91 -0.02 4.11 16 44 H 0.12 5.49 5.64 -2.91 -0.02 5.48 16 45 H 0.26 17.49 7.97 -92.72 -0.74 16.75 16 46 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -89.14 374.70 1.69 -87.44 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.37 Total: 26.31 kcal Atomic # 6 Polarization: -40.92 SS G_CDS: 5.08 Total: -35.84 kcal Atomic # 7 Polarization: -71.69 SS G_CDS: -2.09 Total: -73.78 kcal Atomic # 8 Polarization: -52.33 SS G_CDS: -3.71 Total: -56.03 kcal Atomic # 14 Polarization: 49.85 SS G_CDS: 2.05 Total: 51.90 kcal Total: -89.14 1.69 -87.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156916590.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.854 kcal (2) G-P(sol) polarization free energy of solvation -89.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds