Wall clock time and date at job start Tue Mar 31 2020 19:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.67623 * 2 1 4 4 C 1.53291 * 109.68216 * 239.44088 * 2 1 3 5 5 O 1.42967 * 109.22587 * 292.57820 * 4 2 1 6 6 C 1.42961 * 114.16483 * 297.42492 * 5 4 2 7 7 H 1.08998 * 109.51115 * 302.64878 * 6 5 4 8 8 C 1.53000 * 109.50892 * 182.55552 * 6 5 4 9 9 O 1.42893 * 109.47351 * 64.99662 * 8 6 5 10 10 C 1.52877 * 109.30313 * 62.44438 * 6 5 4 11 11 N 1.47149 * 109.67919 * 120.51547 * 2 1 3 12 12 C 1.34782 * 120.98174 * 249.16544 * 11 2 1 13 13 O 1.21275 * 119.99957 * 0.02562 * 12 11 2 14 14 C 1.50697 * 120.00012 * 180.02562 * 12 11 2 15 15 C 1.50703 * 109.47047 * 179.97438 * 14 12 11 16 16 C 1.38306 * 119.92975 * 270.29820 * 15 14 12 17 17 C 1.38104 * 120.06267 * 180.29756 * 16 15 14 18 18 C 1.38874 * 119.93265 * 359.43007 * 17 16 15 19 19 O 1.35749 * 120.06890 * 180.29770 * 18 17 16 20 20 C 1.34834 * 117.00013 * 354.46142 * 19 18 17 21 21 H 1.07996 * 120.00021 * 5.05939 * 20 19 18 22 22 C 1.38654 * 119.99707 * 185.05824 * 20 19 18 23 23 N 1.31550 * 120.00182 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99577 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47369 * 59.99976 * 24 22 20 26 26 H 1.48494 * 109.47142 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47275 * 300.00018 * 24 22 20 28 28 C 1.38882 * 119.86301 * 0.27303 * 18 17 16 29 29 C 1.38094 * 119.92975 * 0.02562 * 28 18 17 30 30 H 1.09001 * 109.47436 * 299.48564 * 1 2 3 31 31 H 1.08994 * 109.47068 * 59.48494 * 1 2 3 32 32 H 1.09003 * 109.46995 * 179.48427 * 1 2 3 33 33 H 1.08997 * 109.51336 * 52.50339 * 4 2 1 34 34 H 1.08996 * 109.51057 * 172.60559 * 4 2 1 35 35 H 1.09004 * 109.46915 * 184.99939 * 8 6 5 36 36 H 1.08999 * 109.46767 * 304.99167 * 8 6 5 37 37 H 0.96701 * 114.00016 * 180.02562 * 9 8 6 38 38 H 1.08992 * 109.61966 * 188.11375 * 10 6 5 39 39 H 1.09006 * 109.52452 * 67.69957 * 10 6 5 40 40 H 1.09007 * 109.47286 * 60.00136 * 14 12 11 41 41 H 1.08998 * 109.47397 * 300.00180 * 14 12 11 42 42 H 1.07990 * 119.96779 * 0.02562 * 16 15 14 43 43 H 1.08000 * 120.02708 * 179.69965 * 17 16 15 44 44 H 0.97006 * 119.99724 * 179.97438 * 23 22 20 45 45 H 1.08005 * 120.03486 * 180.02562 * 28 18 17 46 46 H 1.08006 * 119.96521 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0263 0.0000 4 6 2.0463 -0.7338 -1.2429 5 8 1.7169 -2.1213 -1.1412 6 6 2.3260 -2.7877 -0.0327 7 1 3.4090 -2.6819 -0.0948 8 6 1.9551 -4.2718 -0.0621 9 8 2.5190 -4.8808 -1.2253 10 6 1.8290 -2.1599 1.2696 11 7 2.0256 -0.7035 1.1936 12 6 2.6462 -0.0346 2.1856 13 8 2.8028 1.1651 2.1024 14 6 3.1455 -0.7774 3.3980 15 6 3.7961 0.1935 4.3493 16 6 5.1474 0.4671 4.2391 17 6 5.7477 1.3517 5.1133 18 6 4.9908 1.9758 6.0962 19 8 5.5769 2.8504 6.9532 20 6 6.9162 2.9829 6.8717 21 1 7.4634 2.4694 6.0950 22 6 7.5910 3.7784 7.7851 23 7 6.9244 4.4044 8.7308 24 14 9.4464 3.9625 7.6717 25 1 9.8065 4.5448 6.3539 26 1 9.9221 4.8587 8.7559 27 1 10.0858 2.6300 7.8153 28 6 3.6329 1.7036 6.2004 29 6 3.0397 0.8134 5.3272 30 1 -0.3634 0.5058 0.8946 31 1 -0.3633 0.5218 -0.8853 32 1 -0.3633 -1.0277 -0.0093 33 1 1.5801 -0.3133 -2.1339 34 1 3.1282 -0.6198 -1.3098 35 1 2.3454 -4.7616 0.8300 36 1 0.8702 -4.3746 -0.0878 37 1 2.3235 -5.8241 -1.3094 38 1 2.3945 -2.5634 2.1095 39 1 0.7696 -2.3811 1.3996 40 1 3.8741 -1.5274 3.0901 41 1 2.3078 -1.2672 3.8945 42 1 5.7344 -0.0149 3.4714 43 1 6.8039 1.5612 5.0297 44 1 7.3966 4.9606 9.3701 45 1 3.0415 2.1877 6.9636 46 1 1.9836 0.6016 5.4074 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157018343.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:55 Heat of formation + Delta-G solvation = -123.925229 kcal Electronic energy + Delta-G solvation = -28720.991442 eV Core-core repulsion = 24576.871155 eV Total energy + Delta-G solvation = -4144.120286 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.79837 -39.19396 -38.49624 -37.05701 -36.44590 -35.03596 -33.52016 -32.39951 -31.33256 -30.14441 -29.98846 -26.82073 -26.49126 -26.04890 -25.11952 -22.78141 -21.95734 -21.60341 -20.35790 -19.09206 -17.96086 -17.77765 -17.48589 -17.11069 -16.91350 -16.15402 -15.69575 -15.58117 -15.06887 -14.72200 -14.51799 -14.43092 -14.25805 -13.93433 -13.67298 -13.50947 -13.35513 -13.24724 -13.14435 -12.67997 -12.58302 -12.44499 -11.99150 -11.93092 -11.80243 -11.52668 -11.49993 -11.23604 -10.88783 -10.81414 -10.73058 -10.62271 -10.54387 -10.41966 -10.32622 -9.70112 -9.30728 -8.79658 -8.77107 -8.12796 -7.14252 -6.42295 -4.00923 2.23502 2.27654 2.65397 2.72489 3.14999 3.16046 3.18692 3.26389 3.66635 3.99114 4.34723 4.37349 4.55967 4.61002 4.63880 4.76264 4.80512 4.87211 5.02133 5.02144 5.06780 5.12786 5.21308 5.22286 5.26776 5.32978 5.33380 5.42608 5.47960 5.62090 5.72032 5.74535 5.86453 5.92613 6.23260 6.27049 6.43866 6.72174 6.75893 6.93355 7.07156 7.16428 7.22113 7.27123 7.38889 7.47375 7.86129 8.02866 8.19501 9.03250 9.73889 10.75726 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.021232 B = 0.002196 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.451127 B =12749.332299 C =13116.505656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.100 3.900 3 H 0.108 0.892 4 C 0.054 3.946 5 O -0.365 6.365 6 C 0.076 3.924 7 H 0.071 0.929 8 C 0.086 3.914 9 O -0.565 6.565 10 C 0.082 3.918 11 N -0.620 5.620 12 C 0.515 3.485 13 O -0.514 6.514 14 C -0.078 4.078 15 C -0.172 4.172 16 C -0.056 4.056 17 C -0.232 4.232 18 C 0.157 3.843 19 O -0.178 6.178 20 C -0.391 4.391 21 H 0.091 0.909 22 C 0.039 3.961 23 N -0.863 5.863 24 Si 0.941 3.059 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.192 4.192 29 C -0.059 4.059 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.381 0.619 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.126 0.874 44 H 0.270 0.730 45 H 0.117 0.883 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.745 -18.340 -17.537 27.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.003 4.003 3 H 0.126 0.874 4 C -0.023 4.023 5 O -0.284 6.284 6 C 0.017 3.983 7 H 0.089 0.911 8 C 0.008 3.992 9 O -0.370 6.370 10 C -0.042 4.042 11 N -0.357 5.357 12 C 0.304 3.696 13 O -0.388 6.388 14 C -0.118 4.118 15 C -0.174 4.174 16 C -0.074 4.074 17 C -0.252 4.252 18 C 0.103 3.897 19 O -0.081 6.081 20 C -0.468 4.468 21 H 0.109 0.891 22 C -0.165 4.165 23 N -0.498 5.498 24 Si 0.766 3.234 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.195 1.195 28 C -0.211 4.211 29 C -0.077 4.077 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.124 0.876 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.228 0.772 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.121 0.879 43 H 0.144 0.856 44 H 0.080 0.920 45 H 0.135 0.865 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.576 -16.812 -17.394 26.819 hybrid contribution 0.862 -0.360 0.154 0.947 sum -10.714 -17.173 -17.241 26.588 Atomic orbital electron populations 1.22005 0.94282 1.02517 1.02419 1.21862 0.95174 0.98433 0.84828 0.87366 1.23011 1.00110 0.81542 0.97666 1.88002 1.71417 1.21687 1.47276 1.22379 0.98052 0.91256 0.86611 0.91115 1.22071 0.97897 0.90876 0.88392 1.86537 1.77844 1.27757 1.44902 1.22163 1.02585 0.81111 0.98353 1.48296 1.59843 1.07221 1.20329 1.21115 0.76717 0.88137 0.83621 1.90741 1.54920 1.14576 1.78522 1.20443 1.00922 0.97711 0.92724 1.18621 0.94065 1.04543 1.00121 1.20493 0.93639 0.96461 0.96808 1.21096 1.00954 1.03457 0.99644 1.19387 0.92279 0.88445 0.89549 1.83977 1.23035 1.50726 1.50345 1.21280 0.79288 1.30857 1.15353 0.89141 1.25284 1.00433 0.95916 0.94893 1.70031 1.36343 1.28269 1.15168 0.85785 0.80637 0.78662 0.78366 1.19510 1.20285 1.19520 1.20151 0.93029 1.04167 1.03736 1.20382 0.97722 0.95425 0.94162 0.92197 0.91448 0.91972 0.87581 0.92560 0.91671 0.92464 0.77181 0.88291 0.90365 0.89087 0.88944 0.87908 0.85585 0.91997 0.86533 0.87437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.25 37.16 0.34 -0.99 16 2 C 0.10 1.02 3.23 -67.42 -0.22 0.80 16 3 H 0.11 1.30 7.08 -51.93 -0.37 0.93 16 4 C 0.05 0.49 6.36 37.31 0.24 0.73 16 5 O -0.37 -3.61 9.98 -39.98 -0.40 -4.01 16 6 C 0.08 0.61 3.04 -26.79 -0.08 0.53 16 7 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 8 C 0.09 0.50 6.71 37.16 0.25 0.75 16 9 O -0.57 -4.17 13.63 -39.98 -0.54 -4.71 16 10 C 0.08 0.60 5.42 -3.75 -0.02 0.58 16 11 N -0.62 -6.65 2.72 -165.01 -0.45 -7.10 16 12 C 0.52 7.26 7.70 -10.98 -0.08 7.17 16 13 O -0.51 -9.71 15.50 5.56 0.09 -9.62 16 14 C -0.08 -0.98 4.20 -29.04 -0.12 -1.10 16 15 C -0.17 -3.01 4.38 -104.57 -0.46 -3.47 16 16 C -0.06 -1.07 9.69 -39.61 -0.38 -1.45 16 17 C -0.23 -5.25 9.17 -39.40 -0.36 -5.61 16 18 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 19 O -0.18 -5.20 9.76 0.04 0.00 -5.20 16 20 C -0.39 -11.18 9.49 30.89 0.29 -10.88 16 21 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 22 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 23 N -0.86 -25.69 13.67 55.48 0.76 -24.93 16 24 Si 0.94 20.84 29.55 -169.99 -5.02 15.82 16 25 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 28 C -0.19 -4.22 9.99 -39.40 -0.39 -4.61 16 29 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.51 7.24 -51.93 -0.38 0.14 16 33 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.38 0.95 9.12 45.56 0.42 1.36 16 38 H 0.10 0.56 6.05 -51.93 -0.31 0.24 16 39 H 0.08 0.49 7.68 -51.93 -0.40 0.10 16 40 H 0.09 0.92 7.59 -51.93 -0.39 0.53 16 41 H 0.09 0.92 7.97 -51.93 -0.41 0.50 16 42 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.13 2.84 5.64 -52.49 -0.30 2.54 16 44 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 46 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 379.64 15.07 5.72 5.72 Total: -1.00 -36.76 379.64 -7.37 -44.13 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -5.78 Total: 4.25 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -1.74 Total: -14.35 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.31 Total: -32.03 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.86 Total: -23.54 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.76 -7.37 -44.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157018343.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.797 kcal (2) G-P(sol) polarization free energy of solvation -36.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds