Wall clock time and date at job start Tue Mar 31 2020 19:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.67623 * 2 1 4 4 C 1.53291 * 109.68216 * 239.44088 * 2 1 3 5 5 O 1.42967 * 109.22587 * 292.57820 * 4 2 1 6 6 C 1.42961 * 114.16483 * 297.42492 * 5 4 2 7 7 H 1.08998 * 109.51115 * 302.64878 * 6 5 4 8 8 C 1.53000 * 109.50892 * 182.55552 * 6 5 4 9 9 O 1.42893 * 109.47351 * 64.99662 * 8 6 5 10 10 C 1.52877 * 109.30313 * 62.44438 * 6 5 4 11 11 N 1.47149 * 109.67919 * 120.51547 * 2 1 3 12 12 C 1.34782 * 120.98174 * 249.16544 * 11 2 1 13 13 O 1.21275 * 119.99957 * 0.02562 * 12 11 2 14 14 C 1.50697 * 120.00012 * 180.02562 * 12 11 2 15 15 C 1.50703 * 109.47047 * 179.97438 * 14 12 11 16 16 C 1.38306 * 119.92975 * 270.29820 * 15 14 12 17 17 C 1.38104 * 120.06267 * 180.29756 * 16 15 14 18 18 C 1.38874 * 119.93265 * 359.43007 * 17 16 15 19 19 O 1.35749 * 120.06890 * 180.29770 * 18 17 16 20 20 C 1.34834 * 117.00013 * 354.46142 * 19 18 17 21 21 H 1.07996 * 120.00021 * 5.05939 * 20 19 18 22 22 C 1.38654 * 119.99707 * 185.05824 * 20 19 18 23 23 N 1.31550 * 120.00182 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99577 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47369 * 59.99976 * 24 22 20 26 26 H 1.48494 * 109.47142 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47275 * 300.00018 * 24 22 20 28 28 C 1.38882 * 119.86301 * 0.27303 * 18 17 16 29 29 C 1.38094 * 119.92975 * 0.02562 * 28 18 17 30 30 H 1.09001 * 109.47436 * 299.48564 * 1 2 3 31 31 H 1.08994 * 109.47068 * 59.48494 * 1 2 3 32 32 H 1.09003 * 109.46995 * 179.48427 * 1 2 3 33 33 H 1.08997 * 109.51336 * 52.50339 * 4 2 1 34 34 H 1.08996 * 109.51057 * 172.60559 * 4 2 1 35 35 H 1.09004 * 109.46915 * 184.99939 * 8 6 5 36 36 H 1.08999 * 109.46767 * 304.99167 * 8 6 5 37 37 H 0.96701 * 114.00016 * 180.02562 * 9 8 6 38 38 H 1.08992 * 109.61966 * 188.11375 * 10 6 5 39 39 H 1.09006 * 109.52452 * 67.69957 * 10 6 5 40 40 H 1.09007 * 109.47286 * 60.00136 * 14 12 11 41 41 H 1.08998 * 109.47397 * 300.00180 * 14 12 11 42 42 H 1.07990 * 119.96779 * 0.02562 * 16 15 14 43 43 H 1.08000 * 120.02708 * 179.69965 * 17 16 15 44 44 H 0.97006 * 119.99724 * 179.97438 * 23 22 20 45 45 H 1.08005 * 120.03486 * 180.02562 * 28 18 17 46 46 H 1.08006 * 119.96521 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0263 0.0000 4 6 2.0463 -0.7338 -1.2429 5 8 1.7169 -2.1213 -1.1412 6 6 2.3260 -2.7877 -0.0327 7 1 3.4090 -2.6819 -0.0948 8 6 1.9551 -4.2718 -0.0621 9 8 2.5190 -4.8808 -1.2253 10 6 1.8290 -2.1599 1.2696 11 7 2.0256 -0.7035 1.1936 12 6 2.6462 -0.0346 2.1856 13 8 2.8028 1.1651 2.1024 14 6 3.1455 -0.7774 3.3980 15 6 3.7961 0.1935 4.3493 16 6 5.1474 0.4671 4.2391 17 6 5.7477 1.3517 5.1133 18 6 4.9908 1.9758 6.0962 19 8 5.5769 2.8504 6.9532 20 6 6.9162 2.9829 6.8717 21 1 7.4634 2.4694 6.0950 22 6 7.5910 3.7784 7.7851 23 7 6.9244 4.4044 8.7308 24 14 9.4464 3.9625 7.6717 25 1 9.8065 4.5448 6.3539 26 1 9.9221 4.8587 8.7559 27 1 10.0858 2.6300 7.8153 28 6 3.6329 1.7036 6.2004 29 6 3.0397 0.8134 5.3272 30 1 -0.3634 0.5058 0.8946 31 1 -0.3633 0.5218 -0.8853 32 1 -0.3633 -1.0277 -0.0093 33 1 1.5801 -0.3133 -2.1339 34 1 3.1282 -0.6198 -1.3098 35 1 2.3454 -4.7616 0.8300 36 1 0.8702 -4.3746 -0.0878 37 1 2.3235 -5.8241 -1.3094 38 1 2.3945 -2.5634 2.1095 39 1 0.7696 -2.3811 1.3996 40 1 3.8741 -1.5274 3.0901 41 1 2.3078 -1.2672 3.8945 42 1 5.7344 -0.0149 3.4714 43 1 6.8039 1.5612 5.0297 44 1 7.3966 4.9606 9.3701 45 1 3.0415 2.1877 6.9636 46 1 1.9836 0.6016 5.4074 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157018343.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:54 Heat of formation + Delta-G solvation = -152.033624 kcal Electronic energy + Delta-G solvation = -28722.210313 eV Core-core repulsion = 24576.871155 eV Total energy + Delta-G solvation = -4145.339158 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.68443 -40.75045 -39.64865 -38.20228 -37.50055 -35.91552 -34.49010 -34.13955 -32.66991 -31.79037 -30.82881 -28.22782 -27.35749 -26.96309 -26.62558 -23.65270 -23.61675 -22.61724 -21.62795 -19.96001 -19.82026 -18.85108 -18.42877 -18.26196 -17.76274 -17.03762 -16.65233 -16.35789 -16.35181 -16.15231 -16.03468 -15.63687 -15.50817 -15.16779 -14.93573 -14.75678 -14.43215 -14.31872 -14.17814 -13.86517 -13.79545 -13.59585 -13.24690 -12.96614 -12.85522 -12.63476 -12.55338 -12.45832 -12.31548 -12.23107 -12.13611 -12.09670 -11.54482 -11.20015 -11.19157 -10.89634 -10.85835 -10.70807 -9.77500 -9.61104 -8.91179 -8.47743 -6.16109 0.60528 0.65216 1.33410 1.44262 1.50106 1.61954 1.83188 2.17335 2.67829 2.80981 3.12911 3.22734 3.50941 3.62724 3.70926 3.89109 3.97502 4.01404 4.06907 4.11113 4.17853 4.25407 4.31620 4.38620 4.44874 4.50970 4.58195 4.58624 4.61755 4.65535 4.69731 4.76830 4.79127 4.93696 4.97264 5.07442 5.13463 5.23749 5.28954 5.44891 5.56215 5.70751 5.75998 6.02083 6.11087 6.19398 6.34096 6.96523 6.97242 7.17500 7.77691 8.75419 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.021232 B = 0.002196 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.451127 B =12749.332299 C =13116.505656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.096 3.904 3 H 0.083 0.917 4 C 0.060 3.940 5 O -0.378 6.378 6 C 0.070 3.930 7 H 0.057 0.943 8 C 0.086 3.914 9 O -0.594 6.594 10 C 0.078 3.922 11 N -0.613 5.613 12 C 0.514 3.486 13 O -0.576 6.576 14 C -0.077 4.077 15 C -0.146 4.146 16 C -0.060 4.060 17 C -0.244 4.244 18 C 0.113 3.887 19 O -0.233 6.233 20 C -0.415 4.415 21 H 0.100 0.900 22 C -0.024 4.024 23 N -0.921 5.921 24 Si 1.020 2.980 25 H -0.260 1.260 26 H -0.270 1.270 27 H -0.255 1.255 28 C -0.206 4.206 29 C -0.056 4.056 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.123 0.877 34 H 0.045 0.955 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.400 0.600 38 H 0.126 0.874 39 H 0.098 0.902 40 H 0.128 0.872 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.117 0.883 44 H 0.273 0.727 45 H 0.112 0.888 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.674 -22.073 -19.625 32.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.007 4.007 3 H 0.101 0.899 4 C -0.018 4.018 5 O -0.297 6.297 6 C 0.011 3.989 7 H 0.075 0.925 8 C 0.008 3.992 9 O -0.403 6.403 10 C -0.044 4.044 11 N -0.347 5.347 12 C 0.304 3.696 13 O -0.454 6.454 14 C -0.116 4.116 15 C -0.147 4.147 16 C -0.078 4.078 17 C -0.263 4.263 18 C 0.062 3.938 19 O -0.140 6.140 20 C -0.491 4.491 21 H 0.117 0.883 22 C -0.221 4.221 23 N -0.559 5.559 24 Si 0.838 3.162 25 H -0.184 1.184 26 H -0.194 1.194 27 H -0.179 1.179 28 C -0.226 4.226 29 C -0.074 4.074 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.140 0.860 34 H 0.064 0.936 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.250 0.750 38 H 0.144 0.856 39 H 0.116 0.884 40 H 0.146 0.854 41 H 0.151 0.849 42 H 0.154 0.846 43 H 0.135 0.865 44 H 0.082 0.918 45 H 0.130 0.870 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.561 -20.652 -19.543 31.084 hybrid contribution 0.875 0.528 0.532 1.152 sum -11.686 -20.124 -19.011 30.049 Atomic orbital electron populations 1.21931 0.92846 1.03075 1.02477 1.21908 0.96211 0.97374 0.85214 0.89883 1.22979 0.99561 0.81534 0.97720 1.88000 1.71635 1.21692 1.48340 1.22569 0.97259 0.92761 0.86316 0.92544 1.22180 0.98609 0.89342 0.89059 1.86475 1.78344 1.29642 1.45820 1.22468 1.04349 0.78574 0.99003 1.48305 1.58199 1.08793 1.19432 1.21271 0.76444 0.87414 0.84426 1.90743 1.57648 1.17126 1.79906 1.20586 1.03014 0.96814 0.91165 1.19227 0.93375 1.02967 0.99154 1.20910 0.94966 0.95457 0.96444 1.21216 1.00682 1.04356 1.00065 1.19946 0.93755 0.89606 0.90457 1.83938 1.23488 1.53659 1.52892 1.21780 0.79765 1.31502 1.16094 0.88284 1.26615 1.06157 0.95177 0.94160 1.70182 1.38749 1.30177 1.16800 0.84643 0.73377 0.79322 0.78823 1.18415 1.19442 1.17927 1.20441 0.92125 1.05213 1.04777 1.20858 0.99664 0.93779 0.93086 0.93456 0.90135 0.91032 0.85961 0.93640 0.88785 0.91435 0.74968 0.85605 0.88395 0.85410 0.84850 0.84603 0.86514 0.91810 0.86968 0.83560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.25 71.98 0.67 -1.51 16 2 C 0.10 1.79 3.23 44.97 0.15 1.94 16 3 H 0.08 1.99 7.08 -2.39 -0.02 1.97 16 4 C 0.06 0.97 6.36 72.08 0.46 1.42 16 5 O -0.38 -6.43 9.98 -144.44 -1.44 -7.88 16 6 C 0.07 0.87 3.04 30.55 0.09 0.96 16 7 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 8 C 0.09 0.65 6.71 71.98 0.48 1.13 16 9 O -0.59 -6.98 13.63 -144.44 -1.97 -8.95 16 10 C 0.08 0.78 5.42 86.21 0.47 1.25 16 11 N -0.61 -11.16 2.72 -794.34 -2.16 -13.32 16 12 C 0.51 12.86 7.70 87.66 0.68 13.54 16 13 O -0.58 -21.11 15.50 -3.01 -0.05 -21.16 16 14 C -0.08 -1.52 4.20 29.10 0.12 -1.39 16 15 C -0.15 -4.65 4.38 -19.83 -0.09 -4.74 16 16 C -0.06 -2.18 9.69 22.25 0.22 -1.96 16 17 C -0.24 -11.28 9.17 22.39 0.21 -11.08 16 18 C 0.11 5.93 6.65 22.58 0.15 6.08 16 19 O -0.23 -14.65 9.76 -22.77 -0.22 -14.88 16 20 C -0.42 -25.11 9.49 67.92 0.64 -24.47 16 21 H 0.10 5.52 5.20 -2.91 -0.02 5.50 16 22 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 23 N -0.92 -57.97 13.67 21.61 0.30 -57.67 16 24 Si 1.02 44.04 29.55 68.60 2.03 46.07 16 25 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 27 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 28 C -0.21 -9.32 9.99 22.39 0.22 -9.09 16 29 C -0.06 -1.97 9.69 22.25 0.22 -1.75 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 0.94 7.24 -2.39 -0.02 0.93 16 33 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.09 0.17 8.14 -2.38 -0.02 0.15 16 36 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.40 0.82 9.12 -74.06 -0.68 0.14 16 38 H 0.13 0.58 6.05 -2.39 -0.01 0.57 16 39 H 0.10 0.69 7.68 -2.38 -0.02 0.67 16 40 H 0.13 1.72 7.59 -2.38 -0.02 1.70 16 41 H 0.13 1.68 7.97 -2.39 -0.02 1.66 16 42 H 0.14 4.02 8.06 -2.92 -0.02 3.99 16 43 H 0.12 5.48 5.64 -2.91 -0.02 5.46 16 44 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 45 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 46 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -88.32 379.64 1.96 -86.36 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.33 Total: 22.02 kcal Atomic # 6 Polarization: -35.74 SS G_CDS: 5.14 Total: -30.60 kcal Atomic # 7 Polarization: -69.12 SS G_CDS: -1.86 Total: -70.99 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -3.68 Total: -52.86 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -88.32 1.96 -86.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157018343.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.672 kcal (2) G-P(sol) polarization free energy of solvation -88.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds