Wall clock time and date at job start Tue Mar 31 2020 19:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.67416 * 2 1 4 4 C 1.53293 * 109.68173 * 239.44724 * 2 1 3 5 5 O 1.42957 * 109.22205 * 187.97268 * 4 2 1 6 6 C 1.42962 * 114.16907 * 62.57797 * 5 4 2 7 7 H 1.09000 * 109.51325 * 57.39463 * 6 5 4 8 8 C 1.53006 * 109.51379 * 177.49897 * 6 5 4 9 9 O 1.42898 * 109.46706 * 294.99728 * 8 6 5 10 10 C 1.53712 * 109.14749 * 297.28734 * 6 5 4 11 11 N 1.47148 * 109.68628 * 120.51420 * 2 1 3 12 12 C 1.34785 * 120.97837 * 350.23926 * 11 2 1 13 13 O 1.21276 * 120.00077 * 4.51180 * 12 11 2 14 14 C 1.50700 * 119.99501 * 184.51137 * 12 11 2 15 15 C 1.50700 * 109.46854 * 180.02562 * 14 12 11 16 16 C 1.38311 * 119.93091 * 89.99841 * 15 14 12 17 17 C 1.38102 * 120.06705 * 179.97438 * 16 15 14 18 18 C 1.38880 * 119.93107 * 0.02562 * 17 16 15 19 19 O 1.35753 * 120.06761 * 179.97438 * 18 17 16 20 20 C 1.34828 * 117.00018 * 5.52018 * 19 18 17 21 21 H 1.08007 * 119.99968 * 354.91263 * 20 19 18 22 22 C 1.38647 * 120.00076 * 174.64025 * 20 19 18 23 23 N 1.31556 * 120.00315 * 180.27604 * 22 20 19 24 24 Si 1.86801 * 120.00044 * 0.27436 * 22 20 19 25 25 H 1.48505 * 109.47007 * 90.00022 * 24 22 20 26 26 H 1.48497 * 109.47623 * 209.99923 * 24 22 20 27 27 H 1.48503 * 109.47107 * 330.00269 * 24 22 20 28 28 C 1.38878 * 119.86363 * 0.27562 * 18 17 16 29 29 C 1.38108 * 119.92806 * 359.42208 * 28 18 17 30 30 H 1.08997 * 109.47104 * 305.48143 * 1 2 3 31 31 H 1.08997 * 109.47410 * 65.49138 * 1 2 3 32 32 H 1.09008 * 109.46474 * 185.49074 * 1 2 3 33 33 H 1.09007 * 109.50819 * 307.89228 * 4 2 1 34 34 H 1.08995 * 109.51535 * 67.99224 * 4 2 1 35 35 H 1.09004 * 109.47237 * 54.99697 * 8 6 5 36 36 H 1.08999 * 109.47371 * 175.00051 * 8 6 5 37 37 H 0.96703 * 114.00188 * 179.97438 * 9 8 6 38 38 H 1.08998 * 109.84023 * 292.86302 * 10 6 5 39 39 H 1.08996 * 109.75274 * 172.16326 * 10 6 5 40 40 H 1.08993 * 109.47346 * 59.99826 * 14 12 11 41 41 H 1.09002 * 109.47337 * 299.99741 * 14 12 11 42 42 H 1.07991 * 119.96235 * 359.97438 * 16 15 14 43 43 H 1.07996 * 120.02967 * 179.97438 * 17 16 15 44 44 H 0.96997 * 120.00118 * 180.02562 * 23 22 20 45 45 H 1.08002 * 120.03932 * 179.72712 * 28 18 17 46 46 H 1.08000 * 119.96200 * 180.27604 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8970 1.0264 0.0000 4 6 2.0463 -0.7337 -1.2430 5 8 3.4636 -0.8913 -1.1417 6 6 3.8860 -1.6894 -0.0333 7 1 3.4219 -2.6736 -0.0955 8 6 5.4084 -1.8394 -0.0624 9 8 5.7923 -2.5754 -1.2256 10 6 3.4649 -0.9995 1.2742 11 7 2.0258 -0.7035 1.1936 12 6 1.1872 -1.0612 2.1863 13 8 -0.0058 -0.8776 2.0681 14 6 1.7320 -1.6892 3.4432 15 6 0.5963 -1.9926 4.3861 16 6 -0.0418 -3.2183 4.3261 17 6 -1.0825 -3.4996 5.1892 18 6 -1.4886 -2.5500 6.1178 19 8 -2.5116 -2.8234 6.9672 20 6 -3.0155 -4.0736 6.9362 21 1 -2.6612 -4.7805 6.2005 22 6 -3.9845 -4.4534 7.8522 23 7 -4.4723 -5.6749 7.8255 24 14 -4.5974 -3.2306 9.1245 25 1 -5.7606 -2.4875 8.5768 26 1 -5.0082 -3.9578 10.3524 27 1 -3.5106 -2.2744 9.4558 28 6 -0.8500 -1.3179 6.1714 29 6 0.1943 -1.0450 5.3097 30 1 -0.3633 0.5965 0.8368 31 1 -0.3634 0.4263 -0.9350 32 1 -0.3632 -1.0231 0.0983 33 1 1.5747 -1.7143 -1.3090 34 1 1.8065 -0.1537 -2.1340 35 1 5.8704 -0.8525 -0.0881 36 1 5.7382 -2.3720 0.8296 37 1 6.7464 -2.7088 -1.3097 38 1 4.0239 -0.0723 1.3999 39 1 3.6567 -1.6617 2.1184 40 1 2.4277 -0.9999 3.9217 41 1 2.2518 -2.6137 3.1916 42 1 0.2742 -3.9560 3.6035 43 1 -1.5806 -4.4566 5.1415 44 1 -5.1505 -5.9404 8.4661 45 1 -1.1663 -0.5758 6.8894 46 1 0.6942 -0.0887 5.3539 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157018641.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:01 Heat of formation + Delta-G solvation = -108.577160 kcal Electronic energy + Delta-G solvation = -28862.019520 eV Core-core repulsion = 24718.564776 eV Total energy + Delta-G solvation = -4143.454744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.89939 -39.28349 -38.64062 -37.05382 -36.62872 -34.95753 -33.75649 -32.45509 -31.51839 -30.24190 -29.96827 -26.96310 -26.62617 -25.49355 -24.93866 -22.73213 -22.09177 -21.81092 -20.57084 -19.21053 -17.92711 -17.85070 -17.32812 -17.23841 -16.82593 -16.30500 -15.94748 -15.43000 -15.20302 -14.86891 -14.64694 -14.41832 -14.08413 -14.01635 -13.73278 -13.51952 -13.44628 -13.23929 -12.85927 -12.66797 -12.52214 -12.48166 -12.18931 -12.15594 -11.72551 -11.61874 -11.41007 -11.25990 -11.11206 -10.91203 -10.75905 -10.65038 -10.60287 -10.39529 -10.14049 -9.37238 -9.13015 -8.84499 -8.70619 -8.22638 -7.29632 -6.40374 -4.06852 2.13067 2.16846 2.60564 2.68929 3.23687 3.24644 3.26637 3.41109 3.64705 4.24893 4.29608 4.35976 4.52145 4.59197 4.63073 4.77182 4.78885 4.83727 4.87320 4.98079 5.00717 5.02618 5.10790 5.19129 5.22769 5.27638 5.39179 5.46019 5.56716 5.60021 5.65131 5.75516 5.97937 6.11822 6.15027 6.33850 6.46928 6.57284 6.74089 6.80321 7.02481 7.15929 7.21248 7.23510 7.31697 7.62829 7.81689 8.05332 8.18590 8.94949 9.57687 10.67303 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.023281 B = 0.002250 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.388198 B =12443.462658 C =12773.517632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.110 3.890 3 H 0.077 0.923 4 C 0.051 3.949 5 O -0.369 6.369 6 C 0.076 3.924 7 H 0.072 0.928 8 C 0.086 3.914 9 O -0.565 6.565 10 C 0.083 3.917 11 N -0.623 5.623 12 C 0.515 3.485 13 O -0.506 6.506 14 C -0.083 4.083 15 C -0.162 4.162 16 C -0.057 4.057 17 C -0.219 4.219 18 C 0.163 3.837 19 O -0.218 6.218 20 C -0.388 4.388 21 H 0.106 0.894 22 C 0.063 3.937 23 N -0.880 5.880 24 Si 0.906 3.094 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.259 1.259 28 C -0.191 4.191 29 C -0.061 4.061 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.106 0.894 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.381 0.619 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.133 0.867 44 H 0.279 0.721 45 H 0.116 0.884 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.259 10.033 -15.474 28.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.007 3.993 3 H 0.095 0.905 4 C -0.027 4.027 5 O -0.287 6.287 6 C 0.017 3.983 7 H 0.090 0.910 8 C 0.007 3.993 9 O -0.371 6.371 10 C -0.041 4.041 11 N -0.360 5.360 12 C 0.304 3.696 13 O -0.380 6.380 14 C -0.122 4.122 15 C -0.163 4.163 16 C -0.076 4.076 17 C -0.238 4.238 18 C 0.111 3.889 19 O -0.123 6.123 20 C -0.464 4.464 21 H 0.124 0.876 22 C -0.140 4.140 23 N -0.518 5.518 24 Si 0.731 3.269 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.184 1.184 28 C -0.210 4.210 29 C -0.079 4.079 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.124 0.876 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.228 0.772 38 H 0.097 0.903 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.124 0.876 43 H 0.150 0.850 44 H 0.089 0.911 45 H 0.134 0.866 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 19.767 10.180 -15.468 27.085 hybrid contribution 0.160 0.165 0.721 0.757 sum 19.927 10.345 -14.747 26.862 Atomic orbital electron populations 1.22137 0.91539 1.04452 1.01298 1.21975 0.96850 0.95777 0.84682 0.90540 1.23130 0.81190 1.00504 0.97831 1.88001 1.21931 1.71417 1.47371 1.22560 0.94481 0.94797 0.86477 0.90981 1.22084 0.92818 0.95973 0.88419 1.86540 1.28687 1.76934 1.44890 1.22361 0.81932 1.01463 0.98357 1.48268 1.07610 1.59980 1.20140 1.21015 0.86566 0.77952 0.84086 1.90793 1.15269 1.52547 1.79382 1.20508 0.97972 1.01330 0.92439 1.18681 1.01116 0.96057 1.00483 1.20550 0.94776 0.95400 0.96857 1.21218 1.01345 1.01635 0.99597 1.19128 0.87011 0.93241 0.89564 1.83570 1.42132 1.32851 1.53711 1.20774 1.21400 0.85831 1.18402 0.87632 1.24469 0.95772 0.96309 0.97482 1.69646 1.28250 1.16943 1.36977 0.86177 0.79805 0.80875 0.80027 1.19875 1.20828 1.18354 1.20148 0.99994 0.96562 1.04322 1.20383 0.95812 0.97243 0.94482 0.90156 0.93590 0.90972 0.92453 0.87644 0.92441 0.91637 0.77160 0.90293 0.88226 0.88918 0.89070 0.87631 0.84974 0.91069 0.86562 0.87270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 7.62 37.16 0.28 -1.30 16 2 C 0.11 1.10 3.68 -67.42 -0.25 0.86 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.05 0.47 6.29 37.31 0.23 0.70 16 5 O -0.37 -3.75 10.35 -39.97 -0.41 -4.16 16 6 C 0.08 0.61 3.08 -26.36 -0.08 0.53 16 7 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 8 C 0.09 0.50 6.71 37.16 0.25 0.75 16 9 O -0.57 -4.21 13.63 -39.97 -0.54 -4.76 16 10 C 0.08 0.59 5.84 -3.32 -0.02 0.57 16 11 N -0.62 -6.45 3.01 -164.50 -0.50 -6.94 16 12 C 0.51 6.79 7.60 -10.98 -0.08 6.71 16 13 O -0.51 -8.67 11.59 5.56 0.06 -8.60 16 14 C -0.08 -0.97 4.26 -29.04 -0.12 -1.10 16 15 C -0.16 -2.68 4.38 -104.57 -0.46 -3.13 16 16 C -0.06 -1.06 9.69 -39.60 -0.38 -1.45 16 17 C -0.22 -4.84 9.17 -39.39 -0.36 -5.20 16 18 C 0.16 3.85 6.65 -39.11 -0.26 3.59 16 19 O -0.22 -5.86 8.59 0.05 0.00 -5.86 16 20 C -0.39 -11.11 9.95 30.88 0.31 -10.80 16 21 H 0.11 3.08 5.44 -52.48 -0.29 2.80 16 22 C 0.06 1.78 5.49 -17.52 -0.10 1.69 16 23 N -0.88 -25.68 13.96 55.48 0.77 -24.90 16 24 Si 0.91 21.94 28.62 -169.99 -4.86 17.08 16 25 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.26 -6.29 7.11 56.52 0.40 -5.89 16 28 C -0.19 -3.89 9.99 -39.39 -0.39 -4.28 16 29 C -0.06 -1.05 9.69 -39.61 -0.38 -1.44 16 30 H 0.08 1.11 6.70 -51.93 -0.35 0.76 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.99 6.89 -51.92 -0.36 0.64 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 37 H 0.38 0.96 9.12 45.56 0.42 1.38 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.10 0.53 6.07 -51.93 -0.32 0.21 16 40 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 41 H 0.09 0.87 7.43 -51.93 -0.39 0.49 16 42 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 43 H 0.13 3.07 5.64 -52.49 -0.30 2.77 16 44 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.12 2.21 8.06 -52.49 -0.42 1.78 16 46 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 374.12 15.07 5.64 5.64 Total: -1.00 -34.97 374.12 -7.44 -42.40 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -5.78 Total: 3.42 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -1.82 Total: -13.31 kcal Atomic # 7 Polarization: -32.13 SS G_CDS: 0.28 Total: -31.85 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.89 Total: -23.38 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.86 Total: 17.08 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.97 -7.44 -42.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157018641.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.173 kcal (2) G-P(sol) polarization free energy of solvation -34.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds