Wall clock time and date at job start Tue Mar 31 2020 19:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.70963 * 2 1 4 4 C 1.52870 * 109.52212 * 120.36206 * 2 1 3 5 5 O 1.42961 * 109.30056 * 67.69805 * 4 2 1 6 6 C 1.42967 * 114.16497 * 62.44791 * 5 4 2 7 7 H 1.08999 * 109.54873 * 57.37138 * 6 5 4 8 8 C 1.52999 * 109.50884 * 177.49584 * 6 5 4 9 9 O 1.42895 * 109.47615 * 294.74470 * 8 6 5 10 10 C 1.53289 * 109.21981 * 297.42024 * 6 5 4 11 11 N 1.47148 * 109.68021 * 239.46791 * 2 1 3 12 12 C 1.34772 * 120.98671 * 110.83525 * 11 2 1 13 13 O 1.21279 * 119.99722 * 359.71856 * 12 11 2 14 14 C 1.50700 * 120.00246 * 179.71122 * 12 11 2 15 15 C 1.50699 * 109.46921 * 180.02562 * 14 12 11 16 16 C 1.38299 * 119.92895 * 90.00758 * 15 14 12 17 17 C 1.38100 * 120.06840 * 180.02562 * 16 15 14 18 18 C 1.38882 * 119.93309 * 359.97438 * 17 16 15 19 19 O 1.35741 * 120.06963 * 179.97438 * 18 17 16 20 20 C 1.34832 * 117.00506 * 5.54159 * 19 18 17 21 21 H 1.07999 * 119.99644 * 354.93489 * 20 19 18 22 22 C 1.38651 * 120.00703 * 174.94177 * 20 19 18 23 23 N 1.31557 * 119.99696 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00330 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47090 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.47183 * 299.99825 * 24 22 20 27 27 H 1.48496 * 109.46942 * 59.99594 * 24 22 20 28 28 C 1.38882 * 119.86015 * 0.25490 * 18 17 16 29 29 C 1.38101 * 119.92899 * 359.49348 * 28 18 17 30 30 H 1.08999 * 109.47549 * 180.53360 * 1 2 3 31 31 H 1.09000 * 109.47138 * 300.53915 * 1 2 3 32 32 H 1.09006 * 109.47165 * 60.53288 * 1 2 3 33 33 H 1.09002 * 109.58274 * 307.68588 * 4 2 1 34 34 H 1.09002 * 109.41213 * 187.60637 * 4 2 1 35 35 H 1.08998 * 109.47547 * 54.75264 * 8 6 5 36 36 H 1.09000 * 109.46651 * 174.74720 * 8 6 5 37 37 H 0.96700 * 114.00660 * 180.02562 * 9 8 6 38 38 H 1.09000 * 109.68557 * 292.57450 * 10 6 5 39 39 H 1.09008 * 109.70837 * 172.04571 * 10 6 5 40 40 H 1.09005 * 109.46624 * 60.00227 * 14 12 11 41 41 H 1.08998 * 109.47133 * 300.00667 * 14 12 11 42 42 H 1.07995 * 119.96830 * 0.04160 * 16 15 14 43 43 H 1.08004 * 120.03340 * 180.02562 * 17 16 15 44 44 H 0.97004 * 120.00173 * 0.02562 * 23 22 20 45 45 H 1.07999 * 120.03676 * 179.72206 * 28 18 17 46 46 H 1.07997 * 119.96818 * 180.27655 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8977 1.0261 0.0000 4 6 2.0409 -0.7283 1.2432 5 8 1.7162 -2.1170 1.1441 6 6 2.3301 -2.7842 0.0387 7 1 3.4128 -2.6754 0.1026 8 6 1.9629 -4.2691 0.0702 9 8 2.5303 -4.8756 1.2330 10 6 1.8290 -2.1603 -1.2687 11 7 2.0256 -0.7039 -1.1934 12 6 2.6462 -0.0354 -2.1855 13 8 2.7988 1.1651 -2.1049 14 6 3.1508 -0.7795 -3.3950 15 6 3.8003 0.1913 -4.3471 16 6 5.1516 0.4649 -4.2385 17 6 5.7498 1.3544 -5.1092 18 6 4.9929 1.9742 -6.0950 19 8 5.5779 2.8494 -6.9520 20 6 6.9165 2.9868 -6.8677 21 1 7.4637 2.4766 -6.0888 22 6 7.5907 3.7832 -7.7807 23 7 6.9242 4.4044 -8.7298 24 14 9.4451 3.9741 -7.6634 25 1 9.9201 4.8702 -8.7481 26 1 9.8001 4.5599 -6.3457 27 1 10.0895 2.6436 -7.8033 28 6 3.6352 1.7010 -6.1986 29 6 3.0440 0.8065 -5.3281 30 1 -0.3634 -1.0276 0.0096 31 1 -0.3633 0.5222 0.8851 32 1 -0.3634 0.5056 -0.8948 33 1 1.5713 -0.3071 2.1321 34 1 3.1224 -0.6113 1.3128 35 1 0.8784 -4.3748 0.0977 36 1 2.3531 -4.7588 -0.8221 37 1 2.3379 -5.8195 1.3180 38 1 0.7696 -2.3815 -1.3987 39 1 2.3940 -2.5641 -2.1090 40 1 2.3158 -1.2732 -3.8922 41 1 3.8811 -1.5263 -3.0835 42 1 5.7398 -0.0179 -3.4721 43 1 6.8052 1.5673 -5.0240 44 1 5.9611 4.3056 -8.7905 45 1 3.0430 2.1847 -6.9613 46 1 1.9892 0.5902 -5.4109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157018784.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:03 Heat of formation + Delta-G solvation = -130.287387 kcal Electronic energy + Delta-G solvation = -28756.985884 eV Core-core repulsion = 24612.589714 eV Total energy + Delta-G solvation = -4144.396170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.83171 -39.27090 -38.56725 -37.09137 -36.57311 -35.06794 -33.55922 -32.44349 -31.32088 -30.21687 -30.01633 -26.81653 -26.47676 -26.06931 -24.79871 -22.81899 -21.95619 -21.65387 -20.46225 -19.13153 -18.35716 -17.80313 -17.52040 -17.13284 -16.84131 -16.17768 -15.72787 -15.64117 -15.23043 -14.82792 -14.58468 -14.43297 -14.06819 -13.90768 -13.68818 -13.64572 -13.45196 -13.38001 -13.18582 -12.99353 -12.61459 -12.58351 -12.01516 -11.94628 -11.75284 -11.53300 -11.22701 -11.06423 -10.90813 -10.87008 -10.74801 -10.56426 -10.35207 -10.28443 -10.26792 -9.74294 -9.38824 -8.80519 -8.74440 -8.20567 -7.22974 -6.75513 -4.04244 2.16588 2.19570 2.61345 2.68557 3.24189 3.24860 3.29881 3.46455 3.64100 4.13261 4.30863 4.35342 4.53060 4.58009 4.61152 4.73712 4.77907 4.84057 4.99508 4.99791 5.02779 5.10408 5.16278 5.18712 5.21214 5.24404 5.30613 5.40024 5.45464 5.56659 5.66437 5.69874 5.78270 5.90061 6.15816 6.23340 6.36148 6.63044 6.73655 6.84209 7.04971 7.14685 7.19997 7.22638 7.32934 7.58342 7.74542 8.15420 8.41818 8.93877 9.62915 10.68527 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.021166 B = 0.002202 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.588693 B =12712.548712 C =13080.533527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.100 3.900 3 H 0.108 0.892 4 C 0.054 3.946 5 O -0.365 6.365 6 C 0.076 3.924 7 H 0.071 0.929 8 C 0.086 3.914 9 O -0.565 6.565 10 C 0.082 3.918 11 N -0.620 5.620 12 C 0.515 3.485 13 O -0.515 6.515 14 C -0.079 4.079 15 C -0.170 4.170 16 C -0.056 4.056 17 C -0.228 4.228 18 C 0.160 3.840 19 O -0.202 6.202 20 C -0.471 4.471 21 H 0.083 0.917 22 C 0.009 3.991 23 N -0.881 5.881 24 Si 1.096 2.904 25 H -0.273 1.273 26 H -0.281 1.281 27 H -0.281 1.281 28 C -0.194 4.194 29 C -0.058 4.058 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.107 0.893 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.381 0.619 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.128 0.872 44 H 0.282 0.718 45 H 0.115 0.885 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.091 -18.765 18.028 28.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.003 4.003 3 H 0.126 0.874 4 C -0.023 4.023 5 O -0.284 6.284 6 C 0.017 3.983 7 H 0.089 0.911 8 C 0.007 3.993 9 O -0.370 6.370 10 C -0.042 4.042 11 N -0.356 5.356 12 C 0.304 3.696 13 O -0.388 6.388 14 C -0.118 4.118 15 C -0.171 4.171 16 C -0.074 4.074 17 C -0.247 4.247 18 C 0.107 3.893 19 O -0.106 6.106 20 C -0.547 4.547 21 H 0.101 0.899 22 C -0.196 4.196 23 N -0.513 5.513 24 Si 0.920 3.080 25 H -0.198 1.198 26 H -0.207 1.207 27 H -0.207 1.207 28 C -0.213 4.213 29 C -0.077 4.077 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.125 0.875 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.228 0.772 38 H 0.097 0.903 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.122 0.878 43 H 0.145 0.855 44 H 0.092 0.908 45 H 0.133 0.867 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.650 -16.630 17.336 26.278 hybrid contribution -1.419 -1.291 0.617 2.016 sum -12.069 -17.922 17.953 28.092 Atomic orbital electron populations 1.22013 0.94274 1.02531 1.02425 1.21779 0.95212 0.98449 0.84860 0.87375 1.22936 1.00185 0.81552 0.97649 1.88003 1.71331 1.21540 1.47495 1.22463 0.97986 0.91252 0.86589 0.91054 1.22074 0.97877 0.90900 0.88405 1.86536 1.77820 1.27745 1.44946 1.22258 1.02578 0.81054 0.98338 1.48288 1.59796 1.07266 1.20297 1.21089 0.76757 0.88142 0.83583 1.90743 1.55070 1.14538 1.78467 1.20444 1.00933 0.97686 0.92779 1.18636 0.94049 1.04462 0.99956 1.20513 0.93651 0.96391 0.96860 1.21114 1.01095 1.03104 0.99396 1.19235 0.92089 0.88434 0.89584 1.83661 1.23807 1.51764 1.51404 1.22204 0.79423 1.34659 1.18432 0.89906 1.26541 1.07848 0.93219 0.91980 1.70571 1.11366 1.38782 1.30612 0.83107 0.70997 0.77060 0.76843 1.19777 1.20733 1.20749 1.20133 0.92935 1.04316 1.03942 1.20378 0.97776 0.95378 0.94133 0.91952 0.91422 0.92228 0.87524 0.92592 0.92458 0.91677 0.77166 0.90312 0.88304 0.88907 0.89013 0.87770 0.85455 0.90813 0.86685 0.87348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.23 37.16 0.34 -0.98 16 2 C 0.10 1.01 3.22 -67.64 -0.22 0.79 16 3 H 0.11 1.29 7.08 -51.93 -0.37 0.92 16 4 C 0.05 0.48 6.33 37.09 0.23 0.72 16 5 O -0.37 -3.58 9.98 -39.71 -0.40 -3.98 16 6 C 0.08 0.61 3.06 -26.58 -0.08 0.53 16 7 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 8 C 0.09 0.50 6.71 37.16 0.25 0.75 16 9 O -0.57 -4.14 13.63 -39.71 -0.54 -4.68 16 10 C 0.08 0.60 5.44 -3.53 -0.02 0.58 16 11 N -0.62 -6.60 2.72 -164.99 -0.45 -7.05 16 12 C 0.52 7.23 7.70 -10.99 -0.08 7.14 16 13 O -0.51 -9.70 15.50 5.56 0.09 -9.61 16 14 C -0.08 -0.98 4.20 -29.04 -0.12 -1.10 16 15 C -0.17 -2.96 4.38 -104.57 -0.46 -3.42 16 16 C -0.06 -1.07 9.69 -39.61 -0.38 -1.46 16 17 C -0.23 -5.20 9.17 -39.39 -0.36 -5.56 16 18 C 0.16 4.01 6.65 -39.10 -0.26 3.75 16 19 O -0.20 -5.85 9.16 0.07 0.00 -5.85 16 20 C -0.47 -13.57 9.49 30.88 0.29 -13.27 16 21 H 0.08 2.25 5.20 -52.49 -0.27 1.97 16 22 C 0.01 0.27 5.49 -17.52 -0.10 0.17 16 23 N -0.88 -26.73 13.70 55.48 0.76 -25.97 16 24 Si 1.10 24.09 29.92 -169.99 -5.09 19.00 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 26 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 27 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 28 C -0.19 -4.24 9.99 -39.39 -0.39 -4.64 16 29 C -0.06 -1.08 9.69 -39.61 -0.38 -1.46 16 30 H 0.06 0.51 7.24 -51.93 -0.38 0.14 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 37 H 0.38 0.93 9.12 45.56 0.42 1.34 16 38 H 0.08 0.49 7.68 -51.93 -0.40 0.09 16 39 H 0.10 0.55 6.05 -51.92 -0.31 0.23 16 40 H 0.09 0.91 7.96 -51.93 -0.41 0.50 16 41 H 0.09 0.92 7.60 -51.93 -0.39 0.53 16 42 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 43 H 0.13 2.93 5.64 -52.48 -0.30 2.64 16 44 H 0.28 8.75 7.97 -40.82 -0.33 8.42 16 45 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 46 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 379.08 15.07 5.71 5.71 Total: -1.00 -37.02 379.08 -7.42 -44.44 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.77 Total: 5.45 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -1.74 Total: -17.47 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.31 Total: -33.02 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.85 Total: -24.12 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -5.09 Total: 19.00 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.02 -7.42 -44.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157018784.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.847 kcal (2) G-P(sol) polarization free energy of solvation -37.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds