Wall clock time and date at job start Tue Mar 31 2020 19:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.70963 * 2 1 4 4 C 1.52870 * 109.52212 * 120.36206 * 2 1 3 5 5 O 1.42961 * 109.30056 * 67.69805 * 4 2 1 6 6 C 1.42967 * 114.16497 * 62.44791 * 5 4 2 7 7 H 1.08999 * 109.54873 * 57.37138 * 6 5 4 8 8 C 1.52999 * 109.50884 * 177.49584 * 6 5 4 9 9 O 1.42895 * 109.47615 * 294.74470 * 8 6 5 10 10 C 1.53289 * 109.21981 * 297.42024 * 6 5 4 11 11 N 1.47148 * 109.68021 * 239.46791 * 2 1 3 12 12 C 1.34772 * 120.98671 * 110.83525 * 11 2 1 13 13 O 1.21279 * 119.99722 * 359.71856 * 12 11 2 14 14 C 1.50700 * 120.00246 * 179.71122 * 12 11 2 15 15 C 1.50699 * 109.46921 * 180.02562 * 14 12 11 16 16 C 1.38299 * 119.92895 * 90.00758 * 15 14 12 17 17 C 1.38100 * 120.06840 * 180.02562 * 16 15 14 18 18 C 1.38882 * 119.93309 * 359.97438 * 17 16 15 19 19 O 1.35741 * 120.06963 * 179.97438 * 18 17 16 20 20 C 1.34832 * 117.00506 * 5.54159 * 19 18 17 21 21 H 1.07999 * 119.99644 * 354.93489 * 20 19 18 22 22 C 1.38651 * 120.00703 * 174.94177 * 20 19 18 23 23 N 1.31557 * 119.99696 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00330 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47090 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.47183 * 299.99825 * 24 22 20 27 27 H 1.48496 * 109.46942 * 59.99594 * 24 22 20 28 28 C 1.38882 * 119.86015 * 0.25490 * 18 17 16 29 29 C 1.38101 * 119.92899 * 359.49348 * 28 18 17 30 30 H 1.08999 * 109.47549 * 180.53360 * 1 2 3 31 31 H 1.09000 * 109.47138 * 300.53915 * 1 2 3 32 32 H 1.09006 * 109.47165 * 60.53288 * 1 2 3 33 33 H 1.09002 * 109.58274 * 307.68588 * 4 2 1 34 34 H 1.09002 * 109.41213 * 187.60637 * 4 2 1 35 35 H 1.08998 * 109.47547 * 54.75264 * 8 6 5 36 36 H 1.09000 * 109.46651 * 174.74720 * 8 6 5 37 37 H 0.96700 * 114.00660 * 180.02562 * 9 8 6 38 38 H 1.09000 * 109.68557 * 292.57450 * 10 6 5 39 39 H 1.09008 * 109.70837 * 172.04571 * 10 6 5 40 40 H 1.09005 * 109.46624 * 60.00227 * 14 12 11 41 41 H 1.08998 * 109.47133 * 300.00667 * 14 12 11 42 42 H 1.07995 * 119.96830 * 0.04160 * 16 15 14 43 43 H 1.08004 * 120.03340 * 180.02562 * 17 16 15 44 44 H 0.97004 * 120.00173 * 0.02562 * 23 22 20 45 45 H 1.07999 * 120.03676 * 179.72206 * 28 18 17 46 46 H 1.07997 * 119.96818 * 180.27655 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8977 1.0261 0.0000 4 6 2.0409 -0.7283 1.2432 5 8 1.7162 -2.1170 1.1441 6 6 2.3301 -2.7842 0.0387 7 1 3.4128 -2.6754 0.1026 8 6 1.9629 -4.2691 0.0702 9 8 2.5303 -4.8756 1.2330 10 6 1.8290 -2.1603 -1.2687 11 7 2.0256 -0.7039 -1.1934 12 6 2.6462 -0.0354 -2.1855 13 8 2.7988 1.1651 -2.1049 14 6 3.1508 -0.7795 -3.3950 15 6 3.8003 0.1913 -4.3471 16 6 5.1516 0.4649 -4.2385 17 6 5.7498 1.3544 -5.1092 18 6 4.9929 1.9742 -6.0950 19 8 5.5779 2.8494 -6.9520 20 6 6.9165 2.9868 -6.8677 21 1 7.4637 2.4766 -6.0888 22 6 7.5907 3.7832 -7.7807 23 7 6.9242 4.4044 -8.7298 24 14 9.4451 3.9741 -7.6634 25 1 9.9201 4.8702 -8.7481 26 1 9.8001 4.5599 -6.3457 27 1 10.0895 2.6436 -7.8033 28 6 3.6352 1.7010 -6.1986 29 6 3.0440 0.8065 -5.3281 30 1 -0.3634 -1.0276 0.0096 31 1 -0.3633 0.5222 0.8851 32 1 -0.3634 0.5056 -0.8948 33 1 1.5713 -0.3071 2.1321 34 1 3.1224 -0.6113 1.3128 35 1 0.8784 -4.3748 0.0977 36 1 2.3531 -4.7588 -0.8221 37 1 2.3379 -5.8195 1.3180 38 1 0.7696 -2.3815 -1.3987 39 1 2.3940 -2.5641 -2.1090 40 1 2.3158 -1.2732 -3.8922 41 1 3.8811 -1.5263 -3.0835 42 1 5.7398 -0.0179 -3.4721 43 1 6.8052 1.5673 -5.0240 44 1 5.9611 4.3056 -8.7905 45 1 3.0430 2.1847 -6.9613 46 1 1.9892 0.5902 -5.4109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157018784.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:03 Heat of formation + Delta-G solvation = -158.600012 kcal Electronic energy + Delta-G solvation = -28758.213612 eV Core-core repulsion = 24612.589714 eV Total energy + Delta-G solvation = -4145.623898 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.71980 -40.86768 -39.70051 -38.33813 -37.52248 -35.94053 -34.56252 -34.15131 -32.68458 -31.87597 -30.84450 -28.12020 -27.33707 -26.78160 -26.63950 -23.68461 -23.65463 -22.69347 -21.71343 -20.28777 -19.93530 -18.76002 -18.46099 -18.27232 -17.77958 -17.17823 -16.94304 -16.42873 -16.32314 -16.12409 -15.79380 -15.71806 -15.61866 -15.23447 -14.96724 -14.90699 -14.75417 -14.36855 -14.22937 -13.91380 -13.81638 -13.28251 -13.04756 -12.95350 -12.81209 -12.63187 -12.56807 -12.44096 -12.35127 -12.11242 -12.07299 -11.94392 -11.56506 -11.30006 -11.22087 -10.90825 -10.86526 -10.71297 -9.85787 -9.63704 -9.02244 -8.95429 -6.26195 0.52038 0.56865 1.46795 1.58347 1.59245 1.77514 1.80195 2.34572 2.66186 2.79039 3.08475 3.19931 3.31577 3.59602 3.68811 3.83845 3.94370 3.95766 4.04034 4.07954 4.10351 4.23436 4.29679 4.34992 4.40675 4.47826 4.52229 4.56730 4.57679 4.62625 4.68008 4.72378 4.75747 4.91942 4.93948 4.98104 5.18610 5.21461 5.22290 5.41701 5.49378 5.67117 5.70414 6.02537 6.09482 6.24624 6.31739 6.84850 6.96116 7.13994 7.60756 8.48457 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.021166 B = 0.002202 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.588693 B =12712.548712 C =13080.533527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.096 3.904 3 H 0.083 0.917 4 C 0.060 3.940 5 O -0.378 6.378 6 C 0.070 3.930 7 H 0.057 0.943 8 C 0.086 3.914 9 O -0.594 6.594 10 C 0.078 3.922 11 N -0.612 5.612 12 C 0.515 3.485 13 O -0.577 6.577 14 C -0.077 4.077 15 C -0.142 4.142 16 C -0.060 4.060 17 C -0.241 4.241 18 C 0.114 3.886 19 O -0.253 6.253 20 C -0.488 4.488 21 H 0.090 0.910 22 C -0.045 4.045 23 N -0.917 5.917 24 Si 1.146 2.854 25 H -0.272 1.272 26 H -0.262 1.262 27 H -0.258 1.258 28 C -0.206 4.206 29 C -0.056 4.056 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.123 0.877 34 H 0.045 0.955 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.400 0.600 38 H 0.099 0.901 39 H 0.126 0.874 40 H 0.135 0.865 41 H 0.129 0.871 42 H 0.138 0.862 43 H 0.115 0.885 44 H 0.259 0.741 45 H 0.114 0.886 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.291 -22.673 20.261 33.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.007 4.007 3 H 0.101 0.899 4 C -0.018 4.018 5 O -0.297 6.297 6 C 0.011 3.989 7 H 0.075 0.925 8 C 0.008 3.992 9 O -0.403 6.403 10 C -0.044 4.044 11 N -0.347 5.347 12 C 0.305 3.695 13 O -0.455 6.455 14 C -0.116 4.116 15 C -0.143 4.143 16 C -0.078 4.078 17 C -0.261 4.261 18 C 0.065 3.935 19 O -0.161 6.161 20 C -0.564 4.564 21 H 0.107 0.893 22 C -0.241 4.241 23 N -0.551 5.551 24 Si 0.961 3.039 25 H -0.196 1.196 26 H -0.187 1.187 27 H -0.182 1.182 28 C -0.225 4.225 29 C -0.074 4.074 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.141 0.859 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.250 0.750 38 H 0.117 0.883 39 H 0.144 0.856 40 H 0.153 0.847 41 H 0.147 0.853 42 H 0.155 0.845 43 H 0.133 0.867 44 H 0.068 0.932 45 H 0.132 0.868 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.913 -20.651 19.635 30.885 hybrid contribution -1.336 -0.378 0.227 1.407 sum -13.249 -21.028 19.861 31.815 Atomic orbital electron populations 1.21940 0.92829 1.03096 1.02483 1.21823 0.96254 0.97381 0.85245 0.89900 1.22906 0.99631 0.81552 0.97705 1.88001 1.71549 1.21544 1.48560 1.22652 0.97188 0.92756 0.86317 0.92493 1.22183 0.98588 0.89371 0.89071 1.86475 1.78319 1.29631 1.45871 1.22566 1.04356 0.78503 0.98976 1.48298 1.58138 1.08840 1.19392 1.21245 0.76489 0.87415 0.84389 1.90746 1.57805 1.17097 1.79863 1.20596 1.03053 0.96777 0.91219 1.19257 0.93297 1.02790 0.98966 1.20929 0.95035 0.95359 0.96479 1.21234 1.00719 1.04155 0.99948 1.19831 0.93657 0.89615 0.90434 1.83637 1.23889 1.54709 1.53862 1.22582 0.80121 1.34895 1.18812 0.89296 1.28433 1.12270 0.92355 0.91082 1.70710 1.09963 1.41617 1.32848 0.82588 0.65383 0.78284 0.77655 1.19642 1.18712 1.18222 1.20455 0.91913 1.05186 1.04927 1.20883 0.99785 0.93690 0.93021 0.91002 0.90115 0.93481 0.85904 0.93690 0.91431 0.88787 0.74958 0.88326 0.85593 0.84720 0.85330 0.84465 0.86672 0.93237 0.86767 0.83318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.23 71.98 0.66 -1.48 16 2 C 0.10 1.77 3.22 44.83 0.14 1.91 16 3 H 0.08 1.97 7.08 -2.39 -0.02 1.95 16 4 C 0.06 0.95 6.33 71.94 0.46 1.41 16 5 O -0.38 -6.35 9.98 -144.70 -1.44 -7.79 16 6 C 0.07 0.85 3.06 30.69 0.09 0.95 16 7 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 8 C 0.09 0.63 6.71 71.98 0.48 1.11 16 9 O -0.59 -6.89 13.63 -144.70 -1.97 -8.86 16 10 C 0.08 0.75 5.44 86.35 0.47 1.22 16 11 N -0.61 -10.96 2.72 -794.31 -2.16 -13.12 16 12 C 0.51 12.70 7.70 87.66 0.68 13.37 16 13 O -0.58 -20.98 15.50 -3.03 -0.05 -21.03 16 14 C -0.08 -1.50 4.20 29.10 0.12 -1.38 16 15 C -0.14 -4.47 4.38 -19.83 -0.09 -4.55 16 16 C -0.06 -2.18 9.69 22.25 0.22 -1.97 16 17 C -0.24 -11.23 9.17 22.39 0.21 -11.03 16 18 C 0.11 5.98 6.65 22.58 0.15 6.13 16 19 O -0.25 -15.72 9.16 -22.66 -0.21 -15.93 16 20 C -0.49 -29.71 9.49 67.92 0.64 -29.07 16 21 H 0.09 5.07 5.20 -2.91 -0.02 5.05 16 22 C -0.05 -2.70 5.49 84.83 0.47 -2.23 16 23 N -0.92 -58.93 13.70 21.61 0.30 -58.63 16 24 Si 1.15 49.54 29.92 68.60 2.05 51.59 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 27 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 28 C -0.21 -9.13 9.99 22.39 0.22 -8.91 16 29 C -0.06 -1.93 9.69 22.25 0.22 -1.72 16 30 H 0.07 0.93 7.24 -2.39 -0.02 0.91 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.40 0.76 9.12 -74.06 -0.68 0.08 16 38 H 0.10 0.66 7.68 -2.39 -0.02 0.65 16 39 H 0.13 0.54 6.05 -2.38 -0.01 0.52 16 40 H 0.13 1.63 7.96 -2.38 -0.02 1.61 16 41 H 0.13 1.68 7.60 -2.39 -0.02 1.66 16 42 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 43 H 0.12 5.52 5.64 -2.91 -0.02 5.50 16 44 H 0.26 17.40 7.97 -92.71 -0.74 16.66 16 45 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 46 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -89.11 379.08 2.03 -87.08 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.36 Total: 22.91 kcal Atomic # 6 Polarization: -41.36 SS G_CDS: 5.14 Total: -36.22 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: -1.86 Total: -71.75 kcal Atomic # 8 Polarization: -49.94 SS G_CDS: -3.67 Total: -53.61 kcal Atomic # 14 Polarization: 49.54 SS G_CDS: 2.05 Total: 51.59 kcal Total: -89.11 2.03 -87.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157018784.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.522 kcal (2) G-P(sol) polarization free energy of solvation -89.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds