Wall clock time and date at job start Tue Mar 31 2020 18:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46695 * 2 1 4 4 N 1.46506 * 109.46646 * 179.97438 * 3 2 1 5 5 C 1.37094 * 119.99949 * 264.76669 * 4 3 2 6 6 H 1.07998 * 120.00371 * 138.85875 * 5 4 3 7 7 C 1.38955 * 119.99944 * 318.85784 * 5 4 3 8 8 N 1.31411 * 120.00108 * 341.82467 * 7 5 4 9 9 Si 1.86803 * 119.99773 * 161.82421 * 7 5 4 10 10 H 1.48497 * 109.47199 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46851 * 120.00437 * 9 7 5 12 12 H 1.48496 * 109.46870 * 239.99724 * 9 7 5 13 13 C 1.34771 * 119.99899 * 84.77132 * 4 3 2 14 14 O 1.21294 * 119.99968 * 179.97438 * 13 4 3 15 15 C 1.50704 * 120.00229 * 359.97438 * 13 4 3 16 16 C 1.53004 * 109.46926 * 180.02562 * 15 13 4 17 17 C 1.53004 * 109.46604 * 179.97438 * 16 15 13 18 18 O 1.42902 * 109.46767 * 179.97438 * 17 16 15 19 19 C 1.35982 * 116.99873 * 179.97438 * 18 17 16 20 20 C 1.38696 * 119.98705 * 0.02562 * 19 18 17 21 21 C 1.38217 * 120.08503 * 179.75210 * 20 19 18 22 22 C 1.38523 * 120.09687 * 0.45106 * 21 20 19 23 23 C 1.39257 * 119.92160 * 359.54744 * 22 21 20 24 24 C 1.38540 * 119.87949 * 0.23266 * 23 22 21 25 25 O 1.36509 * 108.64947 * 180.24826 * 23 22 21 26 26 C 1.43975 * 105.49996 * 342.70128 * 25 23 22 27 27 O 1.36599 * 131.46271 * 179.85165 * 22 21 20 28 28 H 1.08997 * 109.46957 * 299.99947 * 1 2 3 29 29 H 1.09000 * 109.46903 * 60.00600 * 1 2 3 30 30 H 1.09000 * 109.46704 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47473 * 240.00066 * 2 1 3 32 32 H 1.09000 * 109.46903 * 119.99400 * 2 1 3 33 33 H 1.08997 * 109.47375 * 60.00309 * 3 2 1 34 34 H 1.09000 * 109.46955 * 299.99368 * 3 2 1 35 35 H 0.96997 * 119.99878 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.46792 * 60.00086 * 15 13 4 37 37 H 1.09000 * 109.46949 * 299.99910 * 15 13 4 38 38 H 1.09000 * 109.47220 * 60.00042 * 16 15 13 39 39 H 1.09000 * 109.46853 * 299.99504 * 16 15 13 40 40 H 1.09000 * 109.47244 * 60.00122 * 17 16 15 41 41 H 1.08994 * 109.47122 * 299.99786 * 17 16 15 42 42 H 1.08005 * 119.95374 * 0.02562 * 20 19 18 43 43 H 1.08002 * 119.94856 * 180.33664 * 21 20 19 44 44 H 1.07991 * 120.00274 * 180.02562 * 24 23 22 45 45 H 1.09001 * 110.57404 * 268.58682 * 26 25 23 46 46 H 1.08995 * 110.57104 * 145.70652 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1900 1.5510 1.1832 6 1 5.0699 0.9488 1.3549 7 6 3.7521 2.4358 2.1611 8 7 2.9269 3.4085 1.8452 9 14 4.3366 2.2426 3.9248 10 1 5.2542 1.0788 4.0175 11 1 5.0538 3.4728 4.3461 12 1 3.1667 2.0232 4.8126 13 6 4.1793 1.3360 -1.1614 14 8 5.3923 1.3365 -1.1609 15 6 3.4264 1.2163 -2.4614 16 6 4.4212 1.1096 -3.6189 17 6 3.6567 0.9875 -4.9386 18 8 4.5858 0.8884 -6.0199 19 6 4.0666 0.7722 -7.2713 20 6 2.6916 0.7546 -7.4524 21 6 2.1617 0.6416 -8.7240 22 6 3.0022 0.5363 -9.8200 23 6 4.3831 0.5538 -9.6406 24 6 4.9120 0.6717 -8.3656 25 8 4.9833 0.4421 -10.8616 26 6 3.9631 -0.0543 -11.7479 27 8 2.7374 0.4134 -11.1544 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 2.6215 4.0263 2.5277 36 1 2.7995 2.0970 -2.6005 37 1 2.8001 0.3245 -2.4376 38 1 5.0478 0.2287 -3.4795 39 1 5.0478 2.0012 -3.6428 40 1 3.0298 1.8682 -5.0783 41 1 3.0304 0.0958 -4.9145 42 1 2.0342 0.8336 -6.5991 43 1 1.0907 0.6336 -8.8630 44 1 5.9825 0.6859 -8.2243 45 1 3.9812 -1.1437 -11.7808 46 1 4.0881 0.3623 -12.7473 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159441479.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:37 Heat of formation + Delta-G solvation = -133.834150 kcal Electronic energy + Delta-G solvation = -27979.769742 eV Core-core repulsion = 23835.219773 eV Total energy + Delta-G solvation = -4144.549969 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.13560 -40.85088 -40.39754 -37.63944 -37.27495 -37.09569 -34.91805 -34.20698 -32.93341 -31.73881 -30.30266 -28.68978 -27.26355 -26.67707 -26.06318 -24.29960 -23.68845 -22.66246 -22.30301 -20.55233 -19.59905 -18.90143 -18.75547 -18.44173 -17.83283 -17.58286 -17.34769 -16.88764 -16.55784 -16.12174 -15.96107 -15.80947 -15.47286 -15.32504 -14.88767 -14.67011 -14.58661 -14.05939 -14.00545 -13.90782 -13.83029 -13.55109 -13.38791 -13.14922 -13.04636 -12.94044 -12.62380 -12.58990 -12.44968 -12.19309 -12.03277 -11.93418 -11.79822 -11.75941 -11.41350 -11.17690 -10.85555 -10.32195 -9.84032 -9.35003 -8.81891 -8.32447 -6.08339 0.06455 0.18585 1.35979 1.40654 1.53445 1.57205 2.10430 2.16975 2.31934 2.52517 2.64591 3.02414 3.18068 3.45060 3.78402 3.81625 3.90849 3.98259 4.01636 4.09829 4.18072 4.21228 4.28931 4.33853 4.38409 4.46030 4.51457 4.53569 4.66326 4.72301 4.75309 4.88594 5.01472 5.04365 5.06496 5.13496 5.19288 5.21987 5.24747 5.33325 5.35772 5.45951 5.50085 5.65068 6.01932 6.26681 6.38086 6.59143 7.22457 7.51844 8.12514 8.70976 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025012 B = 0.001917 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.188850 B =14601.958468 C =15371.154323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.109 3.891 4 N -0.457 5.457 5 C -0.340 4.340 6 H 0.057 0.943 7 C 0.004 3.996 8 N -0.890 5.890 9 Si 0.977 3.023 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.263 1.263 13 C 0.445 3.555 14 O -0.633 6.633 15 C -0.116 4.116 16 C -0.094 4.094 17 C 0.065 3.935 18 O -0.327 6.327 19 C 0.138 3.862 20 C -0.193 4.193 21 C -0.054 4.054 22 C -0.025 4.025 23 C 0.058 3.942 24 C -0.155 4.155 25 O -0.325 6.325 26 C 0.205 3.795 27 O -0.322 6.322 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.272 0.728 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.171 0.829 43 H 0.165 0.835 44 H 0.140 0.860 45 H 0.104 0.896 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.259 -7.343 -21.883 24.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 C -0.014 4.014 4 N -0.176 5.176 5 C -0.468 4.468 6 H 0.075 0.925 7 C -0.199 4.199 8 N -0.528 5.528 9 Si 0.801 3.199 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.188 1.188 13 C 0.235 3.765 14 O -0.520 6.520 15 C -0.155 4.155 16 C -0.132 4.132 17 C -0.009 4.009 18 O -0.241 6.241 19 C 0.092 3.908 20 C -0.212 4.212 21 C -0.073 4.073 22 C -0.069 4.069 23 C 0.013 3.987 24 C -0.174 4.174 25 O -0.241 6.241 26 C 0.095 3.905 27 O -0.239 6.239 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.123 0.877 37 H 0.131 0.869 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.189 0.811 43 H 0.183 0.817 44 H 0.158 0.842 45 H 0.121 0.879 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.564 -7.089 -21.911 24.570 hybrid contribution 0.789 0.184 0.949 1.247 sum -7.775 -6.906 -20.962 23.400 Atomic orbital electron populations 1.21637 0.93305 1.02360 1.02247 1.21902 0.97360 0.96522 1.01377 1.21649 0.79924 0.96640 1.03161 1.43764 1.06055 1.63252 1.04512 1.19324 1.12199 1.22146 0.93145 0.92500 1.26106 0.97069 0.92934 1.03770 1.69984 1.34033 1.13678 1.35083 0.85133 0.78551 0.78091 0.78117 1.19699 1.20624 1.18765 1.21420 0.87967 0.80355 0.86779 1.90490 1.16763 1.56811 1.87964 1.21438 0.98467 1.05423 0.90216 1.21070 0.97929 1.02815 0.91368 1.22989 0.91182 1.03738 0.82972 1.86071 1.37523 1.87633 1.12920 1.18533 0.92016 0.96004 0.84289 1.21361 0.93372 1.07795 0.98667 1.20154 1.00777 0.98598 0.87746 1.19920 0.92718 1.09033 0.85226 1.19417 0.90417 1.01993 0.86844 1.19117 1.01155 1.10297 0.86850 1.87330 1.37394 1.82699 1.16711 1.26123 0.69688 1.00303 0.94433 1.87332 1.36090 1.84234 1.16255 0.93546 0.91061 0.91278 0.91568 0.94053 0.90608 0.91121 0.91831 0.87740 0.86899 0.92241 0.92886 0.89423 0.88871 0.81139 0.81737 0.84243 0.87853 0.82090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.91 71.98 0.71 -2.56 16 2 C -0.13 -4.25 6.17 30.60 0.19 -4.06 16 3 C 0.11 4.40 4.69 86.38 0.41 4.81 16 4 N -0.46 -22.84 2.50 -635.52 -1.59 -24.43 16 5 C -0.34 -19.26 8.84 84.04 0.74 -18.52 16 6 H 0.06 3.49 7.82 -2.91 -0.02 3.46 16 7 C 0.00 0.20 4.95 84.93 0.42 0.62 16 8 N -0.89 -47.83 11.61 21.66 0.25 -47.58 16 9 Si 0.98 42.62 29.59 68.60 2.03 44.65 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 12 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 13 C 0.44 21.35 7.59 87.66 0.67 22.02 16 14 O -0.63 -36.48 15.89 -3.07 -0.05 -36.53 16 15 C -0.12 -3.69 4.31 29.85 0.13 -3.56 16 16 C -0.09 -2.86 4.87 30.60 0.15 -2.71 16 17 C 0.07 1.39 4.74 71.98 0.34 1.73 16 18 O -0.33 -8.38 10.14 -93.35 -0.95 -9.33 16 19 C 0.14 3.10 6.68 22.48 0.15 3.25 16 20 C -0.19 -3.31 9.03 22.37 0.20 -3.10 16 21 C -0.05 -0.90 10.05 22.33 0.22 -0.68 16 22 C -0.02 -0.51 7.15 22.58 0.16 -0.35 16 23 C 0.06 1.32 7.15 22.59 0.16 1.48 16 24 C -0.15 -3.65 10.00 22.44 0.22 -3.43 16 25 O -0.32 -6.78 11.40 -76.15 -0.87 -7.65 16 26 C 0.21 2.67 8.89 113.37 1.01 3.68 16 27 O -0.32 -6.07 11.41 -77.22 -0.88 -6.95 16 28 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.89 6.59 -2.39 -0.02 1.88 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 3.50 5.75 -2.39 -0.01 3.48 16 34 H 0.07 2.47 6.66 -2.39 -0.02 2.45 16 35 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 36 H 0.10 2.92 7.41 -2.39 -0.02 2.90 16 37 H 0.11 2.87 6.54 -2.39 -0.02 2.86 16 38 H 0.06 2.02 8.10 -2.39 -0.02 2.00 16 39 H 0.05 1.88 8.10 -2.39 -0.02 1.86 16 40 H 0.09 1.49 7.66 -2.39 -0.02 1.47 16 41 H 0.09 1.47 7.66 -2.39 -0.02 1.45 16 42 H 0.17 1.95 6.29 -2.91 -0.02 1.94 16 43 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 44 H 0.14 3.23 8.06 -2.92 -0.02 3.20 16 45 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.16 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -75.92 380.75 4.83 -71.10 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.99 Total: 18.12 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 5.89 Total: -1.40 kcal Atomic # 7 Polarization: -70.67 SS G_CDS: -1.34 Total: -72.01 kcal Atomic # 8 Polarization: -57.71 SS G_CDS: -2.74 Total: -60.45 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -75.92 4.83 -71.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159441479.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.735 kcal (2) G-P(sol) polarization free energy of solvation -75.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds