Wall clock time and date at job start Tue Mar 31 2020 19:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35997 * 117.00178 * 2 1 4 4 C 1.38146 * 120.00112 * 0.27418 * 3 2 1 5 5 C 1.39725 * 119.85206 * 180.29286 * 4 3 2 6 6 C 1.47612 * 120.07620 * 179.70138 * 5 4 3 7 7 O 1.21585 * 119.99366 * 353.09527 * 6 5 4 8 8 N 1.34772 * 120.00109 * 173.09309 * 6 5 4 9 9 C 1.47581 * 134.48984 * 174.68851 * 8 6 5 10 10 C 1.53942 * 86.11716 * 155.36413 * 9 8 6 11 11 O 1.42903 * 113.73973 * 269.15609 * 10 9 8 12 12 C 1.50692 * 113.74347 * 137.95469 * 10 9 8 13 13 H 1.08000 * 120.00078 * 1.92444 * 12 10 9 14 14 C 1.37878 * 119.99990 * 181.92767 * 12 10 9 15 15 N 1.31515 * 119.99916 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 120.00251 * 359.97438 * 14 12 10 17 17 H 1.48497 * 109.47246 * 270.00266 * 16 14 12 18 18 H 1.48504 * 109.46921 * 30.00582 * 16 14 12 19 19 H 1.48504 * 109.47133 * 149.99990 * 16 14 12 20 20 C 1.47809 * 134.45995 * 354.56568 * 8 6 5 21 21 C 1.39705 * 119.85733 * 359.43527 * 5 4 3 22 22 C 1.37794 * 120.00341 * 0.26886 * 21 5 4 23 23 C 1.38833 * 120.14854 * 0.02562 * 22 21 5 24 24 O 1.35795 * 119.93033 * 179.97438 * 23 22 21 25 25 C 1.42902 * 116.99771 * 5.73383 * 24 23 22 26 26 C 1.53001 * 109.47320 * 153.49823 * 25 24 23 27 27 C 1.52999 * 109.47083 * 273.50169 * 25 24 23 28 28 H 1.09000 * 109.47225 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47320 * 300.00132 * 1 2 3 30 30 H 1.08995 * 109.47357 * 60.00503 * 1 2 3 31 31 H 1.08002 * 120.07171 * 0.02707 * 4 3 2 32 32 H 1.09004 * 113.76877 * 41.06309 * 9 8 6 33 33 H 1.08999 * 113.87252 * 269.67622 * 9 8 6 34 34 H 0.96703 * 113.99722 * 178.07062 * 11 10 9 35 35 H 0.97007 * 120.00394 * 179.97438 * 15 14 12 36 36 H 1.09000 * 113.77409 * 90.37433 * 20 8 6 37 37 H 1.08997 * 113.83553 * 318.91307 * 20 8 6 38 38 H 1.07998 * 120.00067 * 180.24398 * 21 5 4 39 39 H 1.08000 * 119.92368 * 180.02562 * 22 21 5 40 40 H 1.09001 * 109.47224 * 33.50301 * 25 24 23 41 41 H 1.09004 * 109.47046 * 59.99887 * 26 25 24 42 42 H 1.09002 * 109.47334 * 179.97438 * 26 25 24 43 43 H 1.08997 * 109.47181 * 300.00216 * 26 25 24 44 44 H 1.08992 * 109.47256 * 59.99532 * 27 25 24 45 45 H 1.09002 * 109.47629 * 180.02562 * 27 25 24 46 46 H 1.09004 * 109.46805 * 299.99820 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2941 2.3703 0.0057 5 6 1.9317 3.6136 -0.0005 6 6 1.1326 4.8548 -0.0011 7 8 -0.0759 4.7996 -0.1228 8 7 1.7426 6.0490 0.1333 9 6 1.2909 7.4530 0.0788 10 6 2.5138 7.7709 0.9583 11 8 2.2434 7.7176 2.3605 12 6 3.2470 9.0220 0.5485 13 1 2.8805 9.6177 -0.2744 14 6 4.3859 9.4061 1.2241 15 7 5.0256 10.4983 0.8668 16 14 5.0196 8.3761 2.6478 17 1 4.4075 8.8521 3.9142 18 1 4.6587 6.9525 2.4279 19 1 6.4966 8.5047 2.7329 20 6 3.1323 6.4779 0.3968 21 6 3.3272 3.6797 -0.0005 22 6 4.0718 2.5202 0.0000 23 6 3.4385 1.2848 0.0000 24 8 4.1767 0.1450 -0.0001 25 6 5.5927 0.2892 0.1271 26 6 6.1801 -0.9767 0.7544 27 6 6.2095 0.5065 -1.2561 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 0.2155 2.3152 0.0106 32 1 0.3359 7.6268 0.5748 33 1 1.3395 7.8936 -0.9169 34 1 3.0159 7.8878 2.9167 35 1 5.8267 10.7688 1.3423 36 1 3.7239 6.6299 -0.5060 37 1 3.6449 5.8746 1.1460 38 1 3.8224 4.6394 -0.0013 39 1 5.1505 2.5728 0.0004 40 1 5.8150 1.1464 0.7627 41 1 5.9578 -1.8339 0.1188 42 1 7.2602 -0.8668 0.8510 43 1 5.7407 -1.1314 1.7398 44 1 5.7911 1.4082 -1.7030 45 1 7.2897 0.6160 -1.1593 46 1 5.9872 -0.3508 -1.8917 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186805879.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:45 Heat of formation + Delta-G solvation = -94.046251 kcal Electronic energy + Delta-G solvation = -29553.736437 eV Core-core repulsion = 25410.911800 eV Total energy + Delta-G solvation = -4142.824637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.04145 -41.27718 -39.86991 -39.32585 -37.72176 -36.27510 -34.54049 -34.20889 -31.76531 -31.55900 -30.20945 -28.48278 -28.13153 -27.27489 -27.19246 -24.65502 -23.85206 -22.18751 -21.62506 -20.78957 -19.62907 -19.31921 -18.85677 -18.22185 -17.79020 -17.13137 -17.03254 -16.79264 -16.50038 -16.23537 -15.92478 -15.65582 -15.48903 -15.37619 -14.91127 -14.50121 -14.46628 -14.37535 -14.09893 -14.05809 -13.68998 -13.61667 -13.31286 -13.12570 -12.97516 -12.82406 -12.66792 -12.52731 -12.44127 -12.33039 -12.12317 -11.92483 -11.79930 -11.63087 -11.49395 -11.09836 -10.91107 -10.45409 -9.97272 -9.70489 -8.99093 -8.40926 -6.53889 -0.29614 0.16490 1.27911 1.29450 1.42310 1.69091 1.76355 2.07019 2.19593 2.22187 2.65528 2.78673 3.16483 3.42041 3.62090 3.74315 3.80850 3.88442 3.98402 4.04472 4.09520 4.15692 4.29132 4.33037 4.35697 4.38958 4.49740 4.50733 4.62826 4.66801 4.70092 4.72275 4.81129 4.84790 4.89208 4.89769 4.96992 5.03981 5.19283 5.24921 5.29637 5.30023 5.41830 6.00750 6.05807 6.46187 6.54337 6.63388 6.71459 7.00882 7.14628 8.74303 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012130 B = 0.003639 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.719398 B = 7691.770217 C = 9384.431783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.319 6.319 3 C 0.078 3.922 4 C -0.119 4.119 5 C -0.146 4.146 6 C 0.572 3.428 7 O -0.591 6.591 8 N -0.628 5.628 9 C 0.125 3.875 10 C 0.186 3.814 11 O -0.561 6.561 12 C -0.543 4.543 13 H 0.058 0.942 14 C 0.031 3.969 15 N -0.923 5.923 16 Si 0.914 3.086 17 H -0.261 1.261 18 H -0.226 1.226 19 H -0.279 1.279 20 C 0.069 3.931 21 C -0.088 4.088 22 C -0.177 4.177 23 C 0.130 3.870 24 O -0.309 6.309 25 C 0.061 3.939 26 C -0.145 4.145 27 C -0.178 4.178 28 H 0.128 0.872 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.145 0.855 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.357 0.643 35 H 0.274 0.726 36 H 0.115 0.885 37 H 0.093 0.907 38 H 0.152 0.848 39 H 0.172 0.828 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.101 0.899 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.095 0.905 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.249 -23.064 -0.700 23.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.233 6.233 3 C 0.032 3.968 4 C -0.138 4.138 5 C -0.150 4.150 6 C 0.365 3.635 7 O -0.474 6.474 8 N -0.361 5.361 9 C 0.003 3.997 10 C 0.146 3.854 11 O -0.373 6.373 12 C -0.581 4.581 13 H 0.076 0.924 14 C -0.170 4.170 15 N -0.560 5.560 16 Si 0.738 3.262 17 H -0.187 1.187 18 H -0.149 1.149 19 H -0.205 1.205 20 C -0.053 4.053 21 C -0.106 4.106 22 C -0.195 4.195 23 C 0.083 3.917 24 O -0.223 6.223 25 C 0.005 3.995 26 C -0.202 4.202 27 C -0.236 4.236 28 H 0.146 0.854 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.163 0.837 32 H 0.089 0.911 33 H 0.125 0.875 34 H 0.209 0.791 35 H 0.083 0.917 36 H 0.132 0.868 37 H 0.111 0.889 38 H 0.169 0.831 39 H 0.189 0.811 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.119 0.881 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.114 0.886 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.120 -23.684 -0.989 23.909 hybrid contribution 0.458 0.804 0.620 1.114 sum 3.578 -22.881 -0.369 23.162 Atomic orbital electron populations 1.23352 0.76713 1.05770 1.01879 1.86135 1.22928 1.24976 1.89234 1.18158 0.89605 0.85208 1.03825 1.21101 1.00837 0.89909 1.01977 1.19507 0.94202 0.91945 1.09302 1.18200 0.86623 0.82908 0.75749 1.90681 1.15452 1.87307 1.53977 1.49948 1.12426 1.04742 1.68949 1.23319 0.98560 0.77833 0.99984 1.20589 0.93237 0.92331 0.79272 1.86480 1.38857 1.94104 1.17848 1.21315 1.09888 1.08600 1.18301 0.92420 1.25794 0.96159 0.95715 0.99380 1.69995 1.19211 1.24610 1.42204 0.86412 0.78485 0.81404 0.79898 1.18668 1.14942 1.20538 1.24738 0.84056 0.94950 1.01582 1.21782 0.92064 1.00343 0.96424 1.21309 1.01943 0.89625 1.06629 1.18588 0.88170 0.86881 0.98082 1.86187 1.20927 1.28112 1.87081 1.22889 0.76723 1.01367 0.98482 1.21881 1.01884 0.95617 1.00844 1.22384 1.02635 1.02694 0.95846 0.85420 0.92381 0.92310 0.83712 0.91126 0.87475 0.79070 0.91677 0.86751 0.88879 0.83114 0.81120 0.89702 0.91669 0.88086 0.92133 0.92426 0.88587 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.43 16 2 O -0.32 -8.22 10.28 -79.51 -0.82 -9.04 16 3 C 0.08 2.17 6.69 22.53 0.15 2.32 16 4 C -0.12 -3.59 8.57 22.61 0.19 -3.40 16 5 C -0.15 -4.84 5.87 -20.09 -0.12 -4.96 16 6 C 0.57 22.76 7.98 86.72 0.69 23.45 16 7 O -0.59 -26.74 17.09 -3.98 -0.07 -26.81 16 8 N -0.63 -24.56 3.60 -843.35 -3.03 -27.59 16 9 C 0.13 5.13 8.23 86.48 0.71 5.84 16 10 C 0.19 8.10 1.06 -10.88 -0.01 8.09 16 11 O -0.56 -25.12 13.35 -148.98 -1.99 -27.11 16 12 C -0.54 -27.44 9.19 25.60 0.24 -27.21 16 13 H 0.06 3.22 8.06 -2.91 -0.02 3.20 16 14 C 0.03 1.57 5.47 84.65 0.46 2.03 16 15 N -0.92 -51.16 13.96 21.45 0.30 -50.86 16 16 Si 0.91 36.13 24.31 68.60 1.67 37.80 16 17 H -0.26 -10.09 7.05 99.48 0.70 -9.38 16 18 H -0.23 -7.76 5.16 99.48 0.51 -7.25 16 19 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 20 C 0.07 2.50 4.69 86.44 0.41 2.91 16 21 C -0.09 -2.43 9.08 22.52 0.20 -2.23 16 22 C -0.18 -4.08 8.29 22.31 0.18 -3.90 16 23 C 0.13 3.32 6.64 22.69 0.15 3.47 16 24 O -0.31 -7.16 9.56 -77.24 -0.74 -7.90 16 25 C 0.06 0.93 2.84 30.59 0.09 1.02 16 26 C -0.15 -1.69 9.56 71.98 0.69 -1.00 16 27 C -0.18 -2.30 9.21 71.98 0.66 -1.63 16 28 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.06 1.04 7.65 -2.38 -0.02 1.02 16 30 H 0.06 1.05 7.67 -2.39 -0.02 1.03 16 31 H 0.15 4.31 5.89 -2.91 -0.02 4.29 16 32 H 0.07 2.96 8.14 -2.38 -0.02 2.94 16 33 H 0.11 4.10 8.09 -2.39 -0.02 4.08 16 34 H 0.36 14.77 3.57 -74.05 -0.26 14.51 16 35 H 0.27 14.11 8.31 -92.70 -0.77 13.34 16 36 H 0.11 3.82 8.01 -2.39 -0.02 3.80 16 37 H 0.09 3.08 5.55 -2.39 -0.01 3.06 16 38 H 0.15 4.00 4.05 -2.91 -0.01 3.99 16 39 H 0.17 2.84 5.45 -2.91 -0.02 2.83 16 40 H 0.09 1.15 6.21 -2.39 -0.01 1.13 16 41 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.06 0.84 7.06 -2.39 -0.02 0.82 16 45 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 Total: -1.00 -68.41 367.19 1.69 -66.71 By element: Atomic # 1 Polarization: 38.02 SS G_CDS: 0.56 Total: 38.59 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 5.81 Total: 6.21 kcal Atomic # 7 Polarization: -75.72 SS G_CDS: -2.74 Total: -78.45 kcal Atomic # 8 Polarization: -67.25 SS G_CDS: -3.61 Total: -70.86 kcal Atomic # 14 Polarization: 36.13 SS G_CDS: 1.67 Total: 37.80 kcal Total: -68.41 1.69 -66.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186805879.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.335 kcal (2) G-P(sol) polarization free energy of solvation -68.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds