Wall clock time and date at job start Tue Mar 31 2020 19:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.51575 * 2 1 4 4 C 1.53302 * 109.51197 * 239.89717 * 2 1 3 5 5 N 1.47154 * 108.38083 * 187.72343 * 4 2 1 6 6 C 1.34776 * 120.98067 * 230.51290 * 5 4 2 7 7 O 1.21280 * 120.00162 * 180.02562 * 6 5 4 8 8 C 1.50708 * 119.99901 * 0.02739 * 6 5 4 9 9 C 1.50704 * 109.46774 * 180.02562 * 8 6 5 10 10 C 1.38319 * 119.96646 * 89.99808 * 9 8 6 11 11 C 1.38281 * 120.13525 * 179.97438 * 10 9 8 12 12 C 1.38121 * 120.07049 * 0.02562 * 11 10 9 13 13 C 1.38858 * 119.93059 * 359.97438 * 12 11 10 14 14 O 1.35745 * 120.06601 * 180.02562 * 13 12 11 15 15 C 1.34826 * 117.00518 * 354.46411 * 14 13 12 16 16 H 1.08004 * 120.00009 * 5.05298 * 15 14 13 17 17 C 1.38653 * 120.00260 * 185.05901 * 15 14 13 18 18 N 1.31558 * 119.99883 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99918 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47337 * 89.99926 * 19 17 15 21 21 H 1.48502 * 109.46928 * 210.00078 * 19 17 15 22 22 H 1.48497 * 109.47199 * 329.99676 * 19 17 15 23 23 C 1.38078 * 119.96097 * 269.72113 * 9 8 6 24 24 C 1.47150 * 118.03633 * 50.53637 * 5 4 2 25 25 C 1.53294 * 108.38457 * 309.46158 * 24 5 4 26 26 H 1.08996 * 109.51317 * 292.37582 * 25 24 5 27 27 C 1.53001 * 109.50832 * 172.22583 * 25 24 5 28 28 O 1.42909 * 109.47053 * 175.00125 * 27 25 24 29 29 O 1.42961 * 109.55145 * 120.12606 * 2 1 3 30 30 H 1.09001 * 109.47122 * 180.09884 * 1 2 3 31 31 H 1.08994 * 109.46937 * 300.10482 * 1 2 3 32 32 H 1.09000 * 109.46687 * 60.10040 * 1 2 3 33 33 H 1.08999 * 109.67862 * 68.00320 * 4 2 1 34 34 H 1.09000 * 109.68174 * 307.44471 * 4 2 1 35 35 H 1.08999 * 109.46763 * 299.99332 * 8 6 5 36 36 H 1.08991 * 109.47361 * 59.99866 * 8 6 5 37 37 H 1.07995 * 119.93409 * 359.97438 * 10 9 8 38 38 H 1.07999 * 119.96240 * 180.02562 * 11 10 9 39 39 H 1.08006 * 120.03310 * 180.02562 * 12 11 10 40 40 H 0.97005 * 119.99623 * 179.97438 * 18 17 15 41 41 H 1.07998 * 120.03427 * 0.02562 * 23 9 8 42 42 H 1.09004 * 109.67810 * 69.18999 * 24 5 4 43 43 H 1.09006 * 109.67724 * 189.73658 * 24 5 4 44 44 H 1.09000 * 109.47634 * 294.99643 * 27 25 24 45 45 H 1.08999 * 109.47532 * 55.00127 * 27 25 24 46 46 H 0.96695 * 114.00038 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0420 -0.7247 -1.2501 5 7 3.5014 -0.8746 -1.1345 6 6 4.3188 -0.5019 -2.1391 7 8 5.5190 -0.6338 -2.0251 8 6 3.7415 0.0788 -3.4043 9 6 4.8584 0.4094 -4.3605 10 6 5.2937 -0.5387 -5.2687 11 6 6.3179 -0.2389 -6.1481 12 6 6.9098 1.0087 -6.1216 13 6 6.4750 1.9627 -5.2111 14 8 7.0544 3.1900 -5.1831 15 6 8.1213 3.3817 -5.9849 16 1 8.4279 2.6056 -6.6706 17 6 8.8248 4.5752 -5.9292 18 7 8.4510 5.5208 -5.0943 19 14 10.3025 4.8411 -7.0407 20 1 9.8569 5.4510 -8.3192 21 1 11.2693 5.7474 -6.3704 22 1 10.9560 3.5364 -7.3159 23 6 5.4421 1.6604 -4.3330 24 6 4.0417 -1.4440 0.1102 25 6 3.4323 -0.6842 1.2939 26 1 3.8033 0.3406 1.2986 27 6 3.8233 -1.3764 2.6012 28 8 3.3536 -0.6041 3.7081 29 8 2.0084 -0.6762 1.1652 30 1 -0.3633 -1.0277 0.0018 31 1 -0.3633 0.5154 0.8890 32 1 -0.3633 0.5123 -0.8909 33 1 1.8023 -0.1394 -2.1378 34 1 1.5765 -1.7078 -1.3211 35 1 3.0723 -0.6477 -3.8652 36 1 3.1854 0.9857 -3.1671 37 1 4.8328 -1.5151 -5.2910 38 1 6.6554 -0.9812 -6.8563 39 1 7.7095 1.2424 -6.8090 40 1 8.9435 6.3556 -5.0551 41 1 5.0990 2.4016 -3.6264 42 1 3.7775 -2.4995 0.1760 43 1 5.1263 -1.3351 0.1231 44 1 3.3750 -2.3694 2.6348 45 1 4.9083 -1.4656 2.6547 46 1 3.5668 -0.9840 4.5713 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187888849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:41 Heat of formation + Delta-G solvation = -125.103875 kcal Electronic energy + Delta-G solvation = -28704.429921 eV Core-core repulsion = 24560.258525 eV Total energy + Delta-G solvation = -4144.171396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.65496 -39.19584 -38.47555 -36.99020 -36.44343 -34.84476 -33.59798 -32.35750 -31.96029 -30.11153 -29.17316 -27.55502 -26.82043 -25.49862 -24.96952 -22.29752 -21.77842 -21.48920 -20.87390 -19.33980 -17.76701 -17.61040 -17.28635 -17.21550 -16.90970 -16.05748 -15.71758 -15.54904 -15.01077 -14.86000 -14.57412 -14.35116 -14.30694 -13.99368 -13.68889 -13.47004 -13.25834 -13.09140 -12.84997 -12.67816 -12.53282 -12.46317 -12.20540 -11.88546 -11.78849 -11.52149 -11.36818 -11.24225 -10.95715 -10.83062 -10.72957 -10.58740 -10.47798 -10.41301 -10.27329 -9.75550 -9.30024 -8.79970 -8.74138 -8.03865 -7.18237 -6.40303 -3.99300 2.09146 2.41970 2.64715 2.75375 3.15344 3.16746 3.21440 3.23467 3.78084 4.00153 4.38568 4.40327 4.53137 4.66481 4.69753 4.79415 4.86422 4.92127 4.96096 5.02827 5.08082 5.11650 5.17949 5.22725 5.30397 5.33758 5.46295 5.53035 5.55298 5.65868 5.67472 5.76913 5.82241 5.95878 6.16597 6.21820 6.36902 6.68538 6.86712 6.94689 7.10835 7.19545 7.27811 7.29250 7.40345 7.47655 7.85927 8.04756 8.17552 9.05502 9.76297 10.78023 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015644 B = 0.002415 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.393617 B =11593.614367 C =12243.229983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.071 3.929 3 H 0.066 0.934 4 C 0.078 3.922 5 N -0.625 5.625 6 C 0.519 3.481 7 O -0.513 6.513 8 C -0.091 4.091 9 C -0.034 4.034 10 C -0.196 4.196 11 C -0.074 4.074 12 C -0.230 4.230 13 C 0.155 3.845 14 O -0.180 6.180 15 C -0.391 4.391 16 H 0.091 0.909 17 C 0.038 3.962 18 N -0.864 5.864 19 Si 0.940 3.060 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.268 1.268 23 C -0.174 4.174 24 C 0.087 3.913 25 C 0.079 3.921 26 H 0.072 0.928 27 C 0.087 3.913 28 O -0.565 6.565 29 O -0.366 6.366 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.126 0.874 40 H 0.269 0.731 41 H 0.113 0.887 42 H 0.075 0.925 43 H 0.104 0.896 44 H 0.057 0.943 45 H 0.066 0.934 46 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.967 -14.836 11.344 23.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.013 3.987 3 H 0.084 0.916 4 C -0.046 4.046 5 N -0.361 5.361 6 C 0.308 3.692 7 O -0.387 6.387 8 C -0.131 4.131 9 C -0.035 4.035 10 C -0.215 4.215 11 C -0.093 4.093 12 C -0.250 4.250 13 C 0.102 3.898 14 O -0.083 6.083 15 C -0.467 4.467 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.500 5.500 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.193 4.193 24 C -0.037 4.037 25 C 0.020 3.980 26 H 0.090 0.910 27 C 0.009 3.991 28 O -0.370 6.370 29 O -0.285 6.285 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.144 0.856 40 H 0.079 0.921 41 H 0.131 0.869 42 H 0.093 0.907 43 H 0.122 0.878 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -14.590 -14.154 11.215 23.217 hybrid contribution 1.134 -0.205 -0.311 1.194 sum -13.456 -14.359 10.904 22.498 Atomic orbital electron populations 1.21724 0.91994 1.03203 1.03086 1.22509 0.95672 0.95688 0.84855 0.91635 1.22532 0.80268 1.02047 0.99719 1.48168 1.06764 1.64824 1.16351 1.20841 0.86733 0.77292 0.84349 1.90758 1.14655 1.52918 1.80354 1.20617 0.98074 1.02144 0.92275 1.18649 0.95922 0.93571 0.95350 1.20335 1.02126 0.98472 1.00608 1.20677 0.95297 0.95694 0.97584 1.21181 1.05258 0.94774 1.03766 1.19262 0.92040 0.85882 0.92658 1.83971 1.41182 1.24527 1.58651 1.21316 1.05094 1.02514 1.17772 0.89125 1.25276 0.98778 0.94809 0.97676 1.70045 1.39451 1.05748 1.34715 0.85721 0.79830 0.78778 0.79149 1.19913 1.20281 1.19222 1.19929 1.00255 0.96985 1.02171 1.22082 1.01114 0.97362 0.83099 1.22454 0.82200 1.00123 0.93218 0.91023 1.22059 0.97843 0.94040 0.85174 1.86537 1.81916 1.52021 1.16542 1.87996 1.20108 1.77253 1.43174 0.91577 0.91303 0.90552 0.88335 0.90398 0.88308 0.88256 0.87973 0.87458 0.85592 0.92101 0.86890 0.90719 0.87752 0.92513 0.91641 0.77261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.57 37.16 0.36 -0.57 16 2 C 0.07 0.64 3.40 -26.57 -0.09 0.55 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 4 C 0.08 0.65 5.83 -3.53 -0.02 0.63 16 5 N -0.62 -7.31 3.02 -172.27 -0.52 -7.83 16 6 C 0.52 7.83 7.70 -10.98 -0.08 7.75 16 7 O -0.51 -10.15 15.50 5.56 0.09 -10.06 16 8 C -0.09 -1.24 4.20 -29.03 -0.12 -1.36 16 9 C -0.03 -0.63 4.37 -104.65 -0.46 -1.09 16 10 C -0.20 -3.58 9.70 -39.54 -0.38 -3.97 16 11 C -0.07 -1.44 10.04 -39.61 -0.40 -1.84 16 12 C -0.23 -5.25 9.17 -39.39 -0.36 -5.61 16 13 C 0.15 3.91 6.65 -39.11 -0.26 3.65 16 14 O -0.18 -5.29 9.76 0.07 0.00 -5.29 16 15 C -0.39 -11.23 9.49 30.89 0.29 -10.94 16 16 H 0.09 2.42 5.20 -52.48 -0.27 2.14 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 18 N -0.86 -25.90 13.67 55.48 0.76 -25.14 16 19 Si 0.94 21.01 29.55 -169.99 -5.02 15.98 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 C -0.17 -3.86 9.64 -39.39 -0.38 -4.24 16 24 C 0.09 0.93 5.93 -3.54 -0.02 0.91 16 25 C 0.08 0.82 3.06 -26.58 -0.08 0.74 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 C 0.09 0.72 6.71 37.16 0.25 0.96 16 28 O -0.56 -5.20 13.63 -39.70 -0.54 -5.74 16 29 O -0.37 -4.01 10.00 -39.70 -0.40 -4.41 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 0.67 6.05 -51.93 -0.31 0.35 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.10 1.03 7.96 -51.93 -0.41 0.62 16 36 H 0.10 1.15 7.60 -51.93 -0.39 0.75 16 37 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 38 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 39 H 0.13 2.85 5.64 -52.48 -0.30 2.55 16 40 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.11 2.43 8.06 -52.49 -0.42 2.01 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.10 1.26 7.08 -51.93 -0.37 0.89 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.38 1.58 9.12 45.56 0.42 1.99 16 LS Contribution 381.81 15.07 5.75 5.75 Total: -1.00 -37.26 381.81 -7.59 -44.86 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -5.85 Total: 5.31 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -1.86 Total: -13.43 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.24 Total: -32.97 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.85 Total: -25.50 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.26 -7.59 -44.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187888849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.248 kcal (2) G-P(sol) polarization free energy of solvation -37.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds