Wall clock time and date at job start Tue Mar 31 2020 19:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08993 * 109.51447 * 2 1 4 4 C 1.53305 * 109.55242 * 120.12432 * 2 1 3 5 5 N 1.47147 * 108.38128 * 172.25129 * 4 2 1 6 6 C 1.34783 * 120.98147 * 129.44327 * 5 4 2 7 7 O 1.21279 * 120.00176 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.99982 * 0.02562 * 6 5 4 9 9 C 1.50689 * 109.47235 * 179.97438 * 8 6 5 10 10 C 1.38324 * 119.97167 * 269.72414 * 9 8 6 11 11 C 1.38279 * 120.14294 * 179.76847 * 10 9 8 12 12 C 1.38119 * 120.06627 * 0.50850 * 11 10 9 13 13 C 1.38857 * 119.93110 * 359.74401 * 12 11 10 14 14 O 1.35751 * 120.06703 * 179.97438 * 13 12 11 15 15 C 1.34828 * 117.00391 * 354.49761 * 14 13 12 16 16 H 1.08002 * 119.99594 * 5.05238 * 15 14 13 17 17 C 1.38657 * 120.00444 * 185.05836 * 15 14 13 18 18 N 1.31555 * 120.00120 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99549 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47078 * 90.00522 * 19 17 15 21 21 H 1.48502 * 109.46828 * 210.00218 * 19 17 15 22 22 H 1.48492 * 109.47138 * 330.00109 * 19 17 15 23 23 C 1.38084 * 119.96507 * 90.00251 * 9 8 6 24 24 C 1.47151 * 118.04032 * 309.46024 * 5 4 2 25 25 C 1.53301 * 108.38021 * 50.53751 * 24 5 4 26 26 H 1.09000 * 109.55104 * 67.65417 * 25 24 5 27 27 C 1.52997 * 109.50982 * 187.77641 * 25 24 5 28 28 O 1.42903 * 109.47325 * 184.74698 * 27 25 24 29 29 O 1.42960 * 109.22298 * 307.69830 * 25 24 5 30 30 H 1.09002 * 109.47467 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47675 * 300.00515 * 1 2 3 32 32 H 1.09005 * 109.47324 * 60.00645 * 1 2 3 33 33 H 1.09000 * 109.67695 * 291.97342 * 4 2 1 34 34 H 1.08996 * 109.67999 * 52.52505 * 4 2 1 35 35 H 1.09001 * 109.47227 * 300.00851 * 8 6 5 36 36 H 1.09007 * 109.47326 * 59.99828 * 8 6 5 37 37 H 1.08006 * 119.92672 * 0.02562 * 10 9 8 38 38 H 1.08001 * 119.96418 * 180.25811 * 11 10 9 39 39 H 1.08001 * 120.03354 * 179.72631 * 12 11 10 40 40 H 0.97004 * 119.99411 * 179.97438 * 18 17 15 41 41 H 1.07994 * 120.03327 * 359.97438 * 23 9 8 42 42 H 1.08998 * 109.67853 * 290.81815 * 24 5 4 43 43 H 1.08998 * 109.68401 * 170.26508 * 24 5 4 44 44 H 1.09007 * 109.47412 * 304.74926 * 27 25 24 45 45 H 1.09005 * 109.47462 * 64.74766 * 27 25 24 46 46 H 0.96697 * 114.00198 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0273 0.0000 4 6 2.0430 -0.7250 1.2495 5 7 3.5021 -0.8749 1.1327 6 6 4.3205 -0.5016 2.1365 7 8 5.5207 -0.6327 2.0210 8 6 3.7442 0.0787 3.4023 9 6 4.8618 0.4100 4.3572 10 6 5.2951 -0.5358 5.2688 11 6 6.3236 -0.2371 6.1435 12 6 6.9145 1.0110 6.1164 13 6 6.4784 1.9644 5.2061 14 8 7.0569 3.1922 5.1774 15 6 7.9697 3.4613 6.1325 16 1 8.2708 2.6888 6.8246 17 6 8.5219 4.7297 6.2262 18 7 9.4122 4.9923 7.1584 19 14 8.0015 6.0656 5.0287 20 1 6.8375 6.8019 5.5837 21 1 9.1293 7.0086 4.8185 22 1 7.6242 5.4483 3.7319 23 6 5.4486 1.6596 4.3253 24 6 4.0416 -1.4441 -0.1124 25 6 3.4311 -0.6840 -1.2956 26 1 3.8021 0.3409 -1.3013 27 6 3.8210 -1.3759 -2.6033 28 8 3.3454 -0.6065 -3.7095 29 8 2.0074 -0.6760 -1.1657 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5139 0.8900 32 1 -0.3634 0.5137 -0.8901 33 1 1.8039 -0.1399 2.1375 34 1 1.5774 -1.7080 1.3207 35 1 3.1871 0.9851 3.1657 36 1 3.0759 -0.6483 3.8639 37 1 4.8319 -1.5111 5.2946 38 1 6.6624 -0.9792 6.8513 39 1 7.7148 1.2452 6.8028 40 1 9.7987 5.8796 7.2237 41 1 5.1072 2.3991 3.6161 42 1 3.7772 -2.4995 -0.1783 43 1 5.1260 -1.3352 -0.1263 44 1 4.9063 -1.4611 -2.6598 45 1 3.3764 -2.3707 -2.6347 46 1 3.5575 -0.9864 -4.5731 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187888934.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:50 Heat of formation + Delta-G solvation = -123.417402 kcal Electronic energy + Delta-G solvation = -28758.081877 eV Core-core repulsion = 24613.983611 eV Total energy + Delta-G solvation = -4144.098265 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.72614 -39.32459 -38.60074 -37.04497 -36.62199 -34.91436 -33.65657 -32.41699 -32.11493 -30.17389 -29.42098 -27.65385 -26.88429 -25.48218 -24.98489 -22.35513 -21.90981 -21.54474 -20.80716 -19.35616 -17.81513 -17.69962 -17.39085 -17.29110 -17.05270 -16.12384 -15.78672 -15.61196 -15.16783 -14.97184 -14.71921 -14.43267 -14.11028 -14.05342 -13.69104 -13.53261 -13.41865 -13.15089 -12.90698 -12.70201 -12.59824 -12.45419 -12.34413 -12.12059 -11.90712 -11.70642 -11.42702 -11.29084 -11.01481 -10.83886 -10.78915 -10.70053 -10.53189 -10.33099 -10.14062 -9.83026 -9.36801 -8.84809 -8.80871 -8.13694 -7.34023 -6.38585 -4.05246 1.99297 2.29861 2.56748 2.68061 3.17785 3.23943 3.26976 3.42919 3.72625 4.26405 4.31548 4.33008 4.46989 4.59766 4.62887 4.71695 4.74109 4.81899 4.88868 4.92793 5.01705 5.04557 5.10099 5.16339 5.23682 5.25575 5.31635 5.46615 5.48824 5.53946 5.60537 5.68575 5.76995 5.84904 6.09896 6.14038 6.26736 6.53930 6.79957 6.81013 7.10237 7.12891 7.22340 7.22970 7.33601 7.62496 7.83396 8.07016 8.09563 8.96996 9.59974 10.69268 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014010 B = 0.002595 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.104781 B =10785.351056 C =11532.123676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.072 3.928 3 H 0.065 0.935 4 C 0.077 3.923 5 N -0.624 5.624 6 C 0.519 3.481 7 O -0.514 6.514 8 C -0.092 4.092 9 C -0.036 4.036 10 C -0.188 4.188 11 C -0.075 4.075 12 C -0.217 4.217 13 C 0.161 3.839 14 O -0.219 6.219 15 C -0.388 4.388 16 H 0.106 0.894 17 C 0.063 3.937 18 N -0.881 5.881 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.260 1.260 23 C -0.174 4.174 24 C 0.086 3.914 25 C 0.079 3.921 26 H 0.071 0.929 27 C 0.087 3.913 28 O -0.565 6.565 29 O -0.366 6.366 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.133 0.867 40 H 0.279 0.721 41 H 0.113 0.887 42 H 0.075 0.925 43 H 0.104 0.896 44 H 0.066 0.934 45 H 0.057 0.943 46 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.000 -14.109 -16.196 28.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.013 3.987 3 H 0.083 0.917 4 C -0.046 4.046 5 N -0.361 5.361 6 C 0.308 3.692 7 O -0.388 6.388 8 C -0.131 4.131 9 C -0.037 4.037 10 C -0.207 4.207 11 C -0.094 4.094 12 C -0.236 4.236 13 C 0.109 3.891 14 O -0.124 6.124 15 C -0.464 4.464 16 H 0.124 0.876 17 C -0.140 4.140 18 N -0.519 5.519 19 Si 0.730 3.270 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.184 1.184 23 C -0.194 4.194 24 C -0.037 4.037 25 C 0.020 3.980 26 H 0.089 0.911 27 C 0.009 3.991 28 O -0.370 6.370 29 O -0.285 6.285 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.150 0.850 40 H 0.089 0.911 41 H 0.131 0.869 42 H 0.093 0.907 43 H 0.123 0.877 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -17.528 -13.510 -15.927 27.266 hybrid contribution 0.351 0.276 -0.548 0.707 sum -17.177 -13.234 -16.475 27.233 Atomic orbital electron populations 1.21726 0.91967 1.03250 1.03092 1.22504 0.95701 0.95634 0.84854 0.91696 1.22537 0.80238 1.02110 0.99709 1.48165 1.06773 1.64756 1.16363 1.20832 0.86727 0.77320 0.84358 1.90758 1.14658 1.52992 1.80350 1.20614 0.98034 1.02217 0.92273 1.18643 0.96076 0.93529 0.95462 1.20411 1.01636 0.98541 1.00087 1.20736 0.95239 0.95770 0.97624 1.21302 1.04653 0.94227 1.03427 1.18999 0.91088 0.85639 0.93382 1.83568 1.51176 1.27960 1.49725 1.20766 1.17102 0.99025 1.09516 0.87644 1.24452 0.95381 0.97254 0.96900 1.69649 1.27297 1.22926 1.32072 0.86193 0.78248 0.80555 0.81989 1.19898 1.20788 1.18393 1.19929 0.99393 0.97253 1.02803 1.22088 1.01109 0.97422 0.83051 1.22452 0.82216 1.00066 0.93240 0.91084 1.22061 0.97796 0.94111 0.85173 1.86533 1.81700 1.52229 1.16570 1.88003 1.20110 1.77252 1.43134 0.91540 0.90554 0.91289 0.88333 0.90334 0.88247 0.88189 0.87747 0.87135 0.84953 0.91105 0.86895 0.90656 0.87742 0.91641 0.92485 0.77225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.57 37.15 0.36 -0.50 16 2 C 0.07 0.59 3.40 -26.58 -0.09 0.50 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 4 C 0.08 0.60 5.83 -3.53 -0.02 0.58 16 5 N -0.62 -6.82 3.02 -172.27 -0.52 -7.34 16 6 C 0.52 7.36 7.70 -10.98 -0.08 7.27 16 7 O -0.51 -9.66 15.50 5.56 0.09 -9.57 16 8 C -0.09 -1.16 4.20 -29.04 -0.12 -1.28 16 9 C -0.04 -0.64 4.37 -104.65 -0.46 -1.09 16 10 C -0.19 -3.28 9.70 -39.53 -0.38 -3.66 16 11 C -0.08 -1.43 10.04 -39.61 -0.40 -1.83 16 12 C -0.22 -4.87 9.17 -39.40 -0.36 -5.23 16 13 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 14 O -0.22 -5.96 8.59 0.05 0.00 -5.96 16 15 C -0.39 -11.20 9.95 30.89 0.31 -10.89 16 16 H 0.11 3.10 5.44 -52.49 -0.29 2.81 16 17 C 0.06 1.80 5.49 -17.52 -0.10 1.71 16 18 N -0.88 -25.86 13.96 55.48 0.77 -25.08 16 19 Si 0.90 22.11 28.62 -169.99 -4.86 17.24 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.26 -6.42 7.11 56.52 0.40 -6.02 16 23 C -0.17 -3.61 9.65 -39.39 -0.38 -3.99 16 24 C 0.09 0.87 5.93 -3.53 -0.02 0.85 16 25 C 0.08 0.78 3.06 -26.58 -0.08 0.69 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 27 C 0.09 0.67 6.71 37.16 0.25 0.92 16 28 O -0.57 -4.91 13.63 -39.97 -0.54 -5.46 16 29 O -0.37 -3.80 9.99 -39.97 -0.40 -4.19 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.10 0.60 6.05 -51.93 -0.31 0.28 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.10 1.04 7.60 -51.93 -0.39 0.65 16 36 H 0.10 0.96 7.96 -51.93 -0.41 0.55 16 37 H 0.10 1.53 8.06 -52.48 -0.42 1.11 16 38 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.13 3.09 5.64 -52.49 -0.30 2.79 16 40 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.11 2.20 8.06 -52.49 -0.42 1.78 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.10 1.18 7.08 -51.93 -0.37 0.81 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.38 1.40 9.12 45.56 0.42 1.82 16 LS Contribution 380.68 15.07 5.74 5.74 Total: -1.00 -36.07 380.68 -7.44 -43.51 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.86 Total: 3.47 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -1.84 Total: -12.35 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: 0.25 Total: -32.42 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.86 Total: -25.18 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.86 Total: 17.24 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.07 -7.44 -43.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187888934.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.910 kcal (2) G-P(sol) polarization free energy of solvation -36.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds