Wall clock time and date at job start Tue Mar 31 2020 19:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.51655 * 2 1 4 4 C 1.52877 * 109.40570 * 120.12708 * 2 1 3 5 5 N 1.47145 * 108.61141 * 67.83959 * 4 2 1 6 6 C 1.34775 * 120.98361 * 230.49976 * 5 4 2 7 7 O 1.21288 * 120.00138 * 179.71243 * 6 5 4 8 8 C 1.50700 * 120.00030 * 359.71775 * 6 5 4 9 9 C 1.50703 * 109.46963 * 179.97438 * 8 6 5 10 10 C 1.38298 * 119.93042 * 90.00328 * 9 8 6 11 11 C 1.38096 * 120.06798 * 179.97438 * 10 9 8 12 12 C 1.38878 * 119.93166 * 359.97438 * 11 10 9 13 13 O 1.35751 * 120.06632 * 179.97438 * 12 11 10 14 14 C 1.34825 * 117.00369 * 354.47748 * 13 12 11 15 15 H 1.07998 * 120.00313 * 5.06007 * 14 13 12 16 16 C 1.38655 * 120.00287 * 185.06530 * 14 13 12 17 17 N 1.31555 * 119.99917 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00297 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47342 * 89.99533 * 18 16 14 20 20 H 1.48495 * 109.46950 * 209.99897 * 18 16 14 21 21 H 1.48503 * 109.46719 * 329.99527 * 18 16 14 22 22 C 1.38875 * 119.86393 * 0.02812 * 12 11 10 23 23 C 1.38098 * 119.92628 * 359.96820 * 22 12 11 24 24 C 1.47158 * 118.03602 * 50.22560 * 5 4 2 25 25 C 1.53293 * 108.38114 * 309.71818 * 24 5 4 26 26 H 1.09002 * 109.51876 * 292.37332 * 25 24 5 27 27 C 1.53005 * 109.51183 * 172.22294 * 25 24 5 28 28 O 1.42900 * 109.47198 * 174.99757 * 27 25 24 29 29 O 1.42956 * 109.51006 * 239.89796 * 2 1 3 30 30 H 1.08991 * 109.47610 * 180.09937 * 1 2 3 31 31 H 1.09008 * 109.47289 * 300.10443 * 1 2 3 32 32 H 1.09003 * 109.46674 * 60.09450 * 1 2 3 33 33 H 1.09006 * 109.61655 * 308.01641 * 4 2 1 34 34 H 1.09005 * 109.52261 * 187.60544 * 4 2 1 35 35 H 1.09004 * 109.47078 * 60.00186 * 8 6 5 36 36 H 1.08995 * 109.46873 * 299.99779 * 8 6 5 37 37 H 1.08001 * 119.96195 * 0.02562 * 10 9 8 38 38 H 1.08003 * 120.03408 * 179.72170 * 11 10 9 39 39 H 0.96997 * 120.00240 * 180.02562 * 17 16 14 40 40 H 1.07999 * 120.03454 * 180.02562 * 22 12 11 41 41 H 1.08003 * 119.96464 * 180.02562 * 23 22 12 42 42 H 1.08994 * 109.67885 * 69.43682 * 24 5 4 43 43 H 1.08996 * 109.68084 * 189.99522 * 24 5 4 44 44 H 1.08999 * 109.47289 * 295.00265 * 27 25 24 45 45 H 1.09004 * 109.46961 * 55.00212 * 27 25 24 46 46 H 0.96698 * 114.00204 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0379 -0.7237 1.2471 5 7 1.6979 -2.1508 1.1332 6 6 1.0736 -2.7976 2.1373 7 8 0.7970 -3.9729 2.0223 8 6 0.7191 -2.0605 3.4031 9 6 0.0334 -3.0033 4.3581 10 6 0.7814 -3.7312 5.2654 11 6 0.1559 -4.5956 6.1422 12 6 -1.2257 -4.7330 6.1126 13 8 -1.8434 -5.5822 6.9729 14 6 -1.0522 -6.3471 7.7519 15 1 0.0189 -6.2098 7.7334 16 6 -1.6135 -7.3100 8.5766 17 7 -2.9182 -7.4770 8.5995 18 14 -0.5173 -8.3691 9.6565 19 1 -0.3305 -7.7071 10.9725 20 1 -1.1527 -9.6964 9.8558 21 1 0.8026 -8.5458 8.9994 22 6 -1.9741 -4.0007 5.2002 23 6 -1.3427 -3.1379 4.3261 24 6 2.0540 -2.8494 -0.1121 25 6 1.5404 -2.0208 -1.2951 26 1 0.4504 -2.0289 -1.2995 27 6 2.0621 -2.6194 -2.6030 28 8 1.4901 -1.9185 -3.7092 29 8 2.0074 -0.6758 -1.1658 30 1 -0.3634 -1.0275 0.0018 31 1 -0.3634 0.5155 0.8891 32 1 -0.3633 0.5124 -0.8909 33 1 1.5631 -0.3028 2.1334 34 1 3.1195 -0.6087 1.3199 35 1 0.0499 -1.2332 3.1665 36 1 1.6274 -1.6727 3.8641 37 1 1.8557 -3.6230 5.2888 38 1 0.7410 -5.1672 6.8475 39 1 -3.3110 -8.1503 9.1767 40 1 -3.0487 -4.1051 5.1751 41 1 -1.9241 -2.5678 3.6166 42 1 3.1371 -2.9520 -0.1785 43 1 1.5897 -3.8355 -0.1255 44 1 3.1477 -2.5278 -2.6369 45 1 1.7844 -3.6720 -2.6571 46 1 1.7768 -2.2455 -4.5728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188006706.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:55 Heat of formation + Delta-G solvation = -150.298110 kcal Electronic energy + Delta-G solvation = -28772.483022 eV Core-core repulsion = 24627.219121 eV Total energy + Delta-G solvation = -4145.263900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.70223 -40.76447 -39.72981 -38.18021 -37.62944 -35.75759 -34.43114 -33.92980 -32.77199 -31.78779 -30.85814 -28.56801 -27.70079 -27.29219 -25.91339 -23.71426 -23.64531 -22.55305 -21.38187 -20.03470 -19.82704 -18.84396 -18.45384 -18.29267 -17.79855 -17.02826 -16.82557 -16.45032 -16.34493 -16.01393 -15.76350 -15.66129 -15.48508 -15.22532 -15.03525 -14.78731 -14.58164 -14.38994 -14.16490 -14.08381 -13.61340 -13.50254 -13.12955 -12.97483 -12.93621 -12.78457 -12.48655 -12.37305 -12.28288 -12.21361 -12.15442 -12.12301 -11.57479 -11.21207 -11.18336 -10.91597 -10.89490 -10.72616 -9.77300 -9.57446 -8.91032 -8.47841 -6.16025 0.60690 0.65437 1.33426 1.42970 1.51497 1.62169 1.85613 2.17171 2.65470 2.81745 3.13989 3.18055 3.51439 3.66093 3.78677 3.84528 3.94232 3.98132 4.03358 4.08151 4.18057 4.25602 4.28726 4.36915 4.42075 4.46527 4.53328 4.56682 4.59704 4.64577 4.71550 4.78982 4.87126 4.90230 5.02193 5.08520 5.13819 5.24309 5.29304 5.39253 5.55965 5.71014 5.76350 6.02313 6.15764 6.19649 6.33990 6.87771 6.96643 7.17421 7.77955 8.75614 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.024399 B = 0.002151 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.316837 B =13016.610291 C =13285.325917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.069 3.931 3 H 0.141 0.859 4 C 0.073 3.927 5 N -0.614 5.614 6 C 0.515 3.485 7 O -0.577 6.577 8 C -0.076 4.076 9 C -0.146 4.146 10 C -0.059 4.059 11 C -0.243 4.243 12 C 0.112 3.888 13 O -0.233 6.233 14 C -0.414 4.414 15 H 0.100 0.900 16 C -0.025 4.025 17 N -0.921 5.921 18 Si 1.020 2.980 19 H -0.260 1.260 20 H -0.271 1.271 21 H -0.255 1.255 22 C -0.206 4.206 23 C -0.057 4.057 24 C 0.086 3.914 25 C 0.079 3.921 26 H 0.056 0.944 27 C 0.085 3.915 28 O -0.588 6.588 29 O -0.378 6.378 30 H 0.039 0.961 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.124 0.876 34 H 0.095 0.905 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.118 0.882 39 H 0.273 0.727 40 H 0.111 0.889 41 H 0.145 0.855 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.076 0.924 46 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.745 17.922 -20.649 31.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.011 3.989 3 H 0.159 0.841 4 C -0.049 4.049 5 N -0.349 5.349 6 C 0.305 3.695 7 O -0.455 6.455 8 C -0.115 4.115 9 C -0.147 4.147 10 C -0.077 4.077 11 C -0.263 4.263 12 C 0.062 3.938 13 O -0.140 6.140 14 C -0.490 4.490 15 H 0.118 0.882 16 C -0.222 4.222 17 N -0.560 5.560 18 Si 0.839 3.161 19 H -0.185 1.185 20 H -0.195 1.195 21 H -0.179 1.179 22 C -0.226 4.226 23 C -0.075 4.075 24 C -0.037 4.037 25 C 0.020 3.980 26 H 0.074 0.926 27 C 0.007 3.993 28 O -0.397 6.397 29 O -0.297 6.297 30 H 0.058 0.942 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.142 0.858 34 H 0.113 0.887 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.156 0.844 38 H 0.135 0.865 39 H 0.082 0.918 40 H 0.130 0.870 41 H 0.162 0.838 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 14.050 17.553 -20.225 30.242 hybrid contribution -0.052 -1.482 0.338 1.521 sum 13.999 16.071 -19.886 29.150 Atomic orbital electron populations 1.22401 0.96108 1.01797 1.03810 1.22778 0.94097 0.97710 0.84305 0.84143 1.22725 1.02862 0.78750 1.00589 1.48163 1.59213 1.11934 1.15552 1.21253 0.75984 0.86951 0.85329 1.90749 1.54668 1.18512 1.81610 1.20572 1.03566 0.97228 0.90135 1.19224 0.93122 1.02571 0.99752 1.20922 0.99780 0.93604 0.93384 1.21226 0.93788 1.05841 1.05416 1.19936 0.92692 0.90959 0.90189 1.83936 1.36260 1.47549 1.46259 1.21817 0.91418 1.15452 1.20316 0.88249 1.26623 0.98184 0.98178 0.99218 1.70187 1.12070 1.34438 1.39271 0.84573 0.77254 0.76691 0.77583 1.18461 1.19542 1.17883 1.20429 0.99548 1.02938 0.99640 1.20846 0.94517 0.96014 0.96117 1.22087 1.01582 0.96775 0.83284 1.22392 0.98488 0.83241 0.93863 0.92621 1.22117 0.97940 0.94872 0.84345 1.86463 1.72810 1.62462 1.17930 1.88049 1.72121 1.25012 1.44479 0.94195 0.89074 0.92128 0.85813 0.88720 0.85199 0.85160 0.84384 0.86463 0.91832 0.87042 0.83759 0.89289 0.89831 0.91266 0.90553 0.75001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 8.80 71.98 0.63 -1.69 16 2 C 0.07 0.77 3.92 30.55 0.12 0.89 16 3 H 0.14 0.87 8.14 -2.39 -0.02 0.86 16 4 C 0.07 0.72 5.89 86.22 0.51 1.22 16 5 N -0.61 -11.00 2.55 -818.15 -2.08 -13.08 16 6 C 0.51 12.72 7.70 87.66 0.68 13.40 16 7 O -0.58 -20.92 15.50 -3.06 -0.05 -20.97 16 8 C -0.08 -1.50 4.20 29.10 0.12 -1.38 16 9 C -0.15 -4.62 4.38 -19.83 -0.09 -4.71 16 10 C -0.06 -2.13 9.69 22.25 0.22 -1.91 16 11 C -0.24 -11.20 9.17 22.39 0.21 -10.99 16 12 C 0.11 5.91 6.65 22.58 0.15 6.06 16 13 O -0.23 -14.64 9.76 -22.71 -0.22 -14.87 16 14 C -0.41 -25.01 9.49 67.92 0.64 -24.37 16 15 H 0.10 5.54 5.20 -2.91 -0.02 5.52 16 16 C -0.02 -1.46 5.49 84.83 0.47 -0.99 16 17 N -0.92 -58.06 13.67 21.61 0.30 -57.77 16 18 Si 1.02 44.12 29.55 68.60 2.03 46.14 16 19 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 20 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 21 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 22 C -0.21 -9.33 9.99 22.39 0.22 -9.10 16 23 C -0.06 -2.01 9.69 22.25 0.22 -1.80 16 24 C 0.09 1.55 5.93 86.35 0.51 2.06 16 25 C 0.08 1.36 2.67 30.69 0.08 1.44 16 26 H 0.06 1.16 6.25 -2.39 -0.01 1.15 16 27 C 0.09 1.14 6.71 71.98 0.48 1.62 16 28 O -0.59 -8.98 13.63 -144.70 -1.97 -10.95 16 29 O -0.38 -6.46 10.19 -144.70 -1.48 -7.94 16 30 H 0.04 0.69 6.12 -2.39 -0.01 0.68 16 31 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.12 0.61 6.04 -2.38 -0.01 0.60 16 34 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.13 1.69 7.59 -2.38 -0.02 1.67 16 36 H 0.13 1.73 7.97 -2.39 -0.02 1.71 16 37 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 38 H 0.12 5.47 5.64 -2.91 -0.02 5.45 16 39 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 40 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 41 H 0.14 3.99 8.06 -2.91 -0.02 3.96 16 42 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.08 1.86 7.08 -2.39 -0.02 1.85 16 44 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.40 2.13 9.12 -74.06 -0.68 1.46 16 Total: -1.00 -87.85 377.04 2.03 -85.82 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.34 Total: 23.84 kcal Atomic # 6 Polarization: -35.40 SS G_CDS: 5.17 Total: -30.23 kcal Atomic # 7 Polarization: -69.06 SS G_CDS: -1.79 Total: -70.85 kcal Atomic # 8 Polarization: -51.01 SS G_CDS: -3.72 Total: -54.72 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -87.85 2.03 -85.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188006706.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.476 kcal (2) G-P(sol) polarization free energy of solvation -87.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds