Wall clock time and date at job start Tue Mar 31 2020 19:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.51494 * 2 1 4 4 C 1.53297 * 109.55624 * 239.87843 * 2 1 3 5 5 N 1.47156 * 108.38243 * 292.35549 * 4 2 1 6 6 C 1.34774 * 120.98552 * 129.44307 * 5 4 2 7 7 O 1.21283 * 120.00047 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.99792 * 0.02562 * 6 5 4 9 9 C 1.50701 * 109.47309 * 180.02562 * 8 6 5 10 10 C 1.38298 * 119.92703 * 269.73153 * 9 8 6 11 11 C 1.38108 * 120.06675 * 179.72362 * 10 9 8 12 12 C 1.38879 * 119.92888 * 0.54260 * 11 10 9 13 13 O 1.35751 * 120.07022 * 179.74771 * 12 11 10 14 14 C 1.34831 * 117.00026 * 174.44103 * 13 12 11 15 15 H 1.07995 * 119.99739 * 5.06173 * 14 13 12 16 16 C 1.38649 * 119.99692 * 185.05639 * 14 13 12 17 17 N 1.31552 * 120.00170 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99768 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46944 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47022 * 120.00222 * 18 16 14 21 21 H 1.48501 * 109.47294 * 239.99968 * 18 16 14 22 22 C 1.38880 * 119.86319 * 359.72805 * 12 11 10 23 23 C 1.38104 * 119.92893 * 359.97438 * 22 12 11 24 24 C 1.47152 * 118.03280 * 309.46104 * 5 4 2 25 25 C 1.53295 * 108.38389 * 50.53725 * 24 5 4 26 26 H 1.09006 * 109.55536 * 67.64909 * 25 24 5 27 27 C 1.53004 * 109.51216 * 187.77182 * 25 24 5 28 28 O 1.42898 * 109.47049 * 184.74661 * 27 25 24 29 29 O 1.42957 * 109.22320 * 307.69506 * 25 24 5 30 30 H 1.08992 * 109.47094 * 299.99736 * 1 2 3 31 31 H 1.08998 * 109.46614 * 59.99686 * 1 2 3 32 32 H 1.08993 * 109.46810 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.68272 * 52.07183 * 4 2 1 34 34 H 1.08996 * 109.68311 * 172.63322 * 4 2 1 35 35 H 1.09002 * 109.47241 * 300.00432 * 8 6 5 36 36 H 1.09001 * 109.47059 * 60.00179 * 8 6 5 37 37 H 1.07999 * 119.97021 * 359.97438 * 10 9 8 38 38 H 1.07999 * 120.03823 * 180.26839 * 11 10 9 39 39 H 0.97010 * 120.00040 * 180.02562 * 17 16 14 40 40 H 1.07998 * 120.03788 * 179.97438 * 22 12 11 41 41 H 1.07998 * 119.96728 * 179.97438 * 23 22 12 42 42 H 1.09005 * 109.68623 * 290.81232 * 24 5 4 43 43 H 1.09001 * 109.68072 * 170.26263 * 24 5 4 44 44 H 1.09001 * 109.47018 * 304.74458 * 27 25 24 45 45 H 1.09002 * 109.47262 * 64.74591 * 27 25 24 46 46 H 0.96703 * 113.99940 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0431 -0.7249 -1.2495 5 7 1.6980 -2.1507 -1.1334 6 6 1.0738 -2.7975 -2.1376 7 8 0.7972 -3.9728 -2.0226 8 6 0.7194 -2.0603 -3.4033 9 6 0.0337 -3.0029 -4.3585 10 6 0.7813 -3.7267 -5.2695 11 6 0.1565 -4.5956 -6.1423 12 6 -1.2251 -4.7338 -6.1122 13 8 -1.8427 -5.5832 -6.9723 14 6 -3.1704 -5.7566 -6.8138 15 1 -3.7082 -5.1700 -6.0837 16 6 -3.8452 -6.6878 -7.5883 17 7 -3.1899 -7.4026 -8.4773 18 14 -5.6848 -6.9275 -7.3693 19 1 -6.1815 -6.0085 -6.3139 20 1 -6.3782 -6.6321 -8.6488 21 1 -5.9571 -8.3321 -6.9716 22 6 -1.9735 -4.0013 -5.1999 23 6 -1.3422 -3.1387 -4.3256 24 6 2.0542 -2.8493 0.1118 25 6 1.5406 -2.0209 1.2949 26 1 0.4505 -2.0289 1.3001 27 6 2.0622 -2.6195 2.6027 28 8 1.4948 -1.9149 3.7089 29 8 2.0076 -0.6759 1.1657 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.5716 -0.3043 -2.1376 34 1 3.1251 -0.6137 -1.3200 35 1 0.0503 -1.2330 -3.1667 36 1 1.6278 -1.6725 -3.8643 37 1 1.8552 -3.6153 -5.2957 38 1 0.7412 -5.1638 -6.8506 39 1 -3.6622 -8.0539 -9.0195 40 1 -3.0481 -4.1063 -5.1743 41 1 -1.9236 -2.5685 -3.6162 42 1 3.1373 -2.9520 0.1783 43 1 1.5900 -3.8355 0.1251 44 1 1.7806 -3.6711 2.6588 45 1 3.1482 -2.5320 2.6347 46 1 1.7818 -2.2419 4.5725 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188006731.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:59 Heat of formation + Delta-G solvation = -122.558629 kcal Electronic energy + Delta-G solvation = -28799.965490 eV Core-core repulsion = 24655.904464 eV Total energy + Delta-G solvation = -4144.061026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.82767 -39.23241 -38.52108 -37.03250 -36.47440 -34.86423 -33.26697 -32.41805 -31.37832 -30.15779 -30.06873 -27.26586 -27.02824 -25.57001 -24.71299 -23.06602 -21.95408 -21.17897 -20.38714 -19.13303 -17.95838 -17.83003 -17.36541 -17.15153 -16.89255 -16.16405 -15.93125 -15.34033 -14.97052 -14.71920 -14.58083 -14.41735 -14.28046 -13.95453 -13.75690 -13.52658 -13.45486 -13.30886 -12.86916 -12.68583 -12.48935 -12.40740 -12.29122 -11.84389 -11.74165 -11.57293 -11.50104 -11.25321 -10.86666 -10.83710 -10.73069 -10.58249 -10.53353 -10.40272 -10.27115 -9.73207 -9.29988 -8.80302 -8.74417 -8.12938 -7.14344 -6.42521 -4.00996 2.23522 2.27399 2.65177 2.75221 3.14011 3.15761 3.21157 3.26202 3.75443 3.98948 4.29993 4.42440 4.54774 4.56743 4.65591 4.78562 4.83210 4.90074 4.93600 5.05904 5.07086 5.10576 5.16770 5.24121 5.28608 5.33184 5.34314 5.50335 5.55188 5.58760 5.66512 5.73623 5.86425 5.87273 6.17565 6.24159 6.43844 6.72054 6.80159 6.93169 7.07419 7.20403 7.22667 7.26992 7.38905 7.47322 7.85963 8.02900 8.18817 9.03361 9.73931 10.75682 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019872 B = 0.002245 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.709681 B =12471.815099 C =12908.819870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.073 3.927 3 H 0.115 0.885 4 C 0.078 3.922 5 N -0.622 5.622 6 C 0.515 3.485 7 O -0.516 6.516 8 C -0.077 4.077 9 C -0.172 4.172 10 C -0.059 4.059 11 C -0.191 4.191 12 C 0.157 3.843 13 O -0.178 6.178 14 C -0.390 4.390 15 H 0.092 0.908 16 C 0.038 3.962 17 N -0.863 5.863 18 Si 0.941 3.059 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.232 4.232 23 C -0.056 4.056 24 C 0.086 3.914 25 C 0.075 3.925 26 H 0.075 0.925 27 C 0.086 3.914 28 O -0.565 6.565 29 O -0.363 6.363 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.117 0.883 39 H 0.269 0.731 40 H 0.127 0.873 41 H 0.103 0.897 42 H 0.074 0.926 43 H 0.103 0.897 44 H 0.065 0.935 45 H 0.056 0.944 46 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.388 15.232 19.449 27.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.015 3.985 3 H 0.132 0.868 4 C -0.046 4.046 5 N -0.359 5.359 6 C 0.304 3.696 7 O -0.389 6.389 8 C -0.117 4.117 9 C -0.173 4.173 10 C -0.077 4.077 11 C -0.210 4.210 12 C 0.103 3.897 13 O -0.082 6.082 14 C -0.467 4.467 15 H 0.110 0.890 16 C -0.166 4.166 17 N -0.498 5.498 18 Si 0.766 3.234 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.201 1.201 22 C -0.251 4.251 23 C -0.074 4.074 24 C -0.037 4.037 25 C 0.016 3.984 26 H 0.093 0.907 27 C 0.008 3.992 28 O -0.370 6.370 29 O -0.282 6.282 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.126 0.874 38 H 0.135 0.865 39 H 0.079 0.921 40 H 0.144 0.856 41 H 0.121 0.879 42 H 0.092 0.908 43 H 0.121 0.879 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 11.076 14.660 18.760 26.258 hybrid contribution -0.776 -0.506 0.426 1.019 sum 10.300 14.154 19.186 25.971 Atomic orbital electron populations 1.22397 0.95662 1.03155 1.03075 1.22608 0.94368 0.96596 0.84940 0.86765 1.22485 1.01358 0.81094 0.99644 1.48162 1.60792 1.10674 1.16296 1.21123 0.76334 0.87677 0.84482 1.90745 1.51875 1.15966 1.80360 1.20431 1.01485 0.97873 0.91914 1.18622 0.93466 1.04327 1.00873 1.20392 0.97881 0.94978 0.94494 1.20156 0.92010 1.04597 1.04271 1.19382 0.91914 0.89631 0.88752 1.83977 1.23527 1.54095 1.46562 1.21375 0.80341 1.22241 1.22696 0.89037 1.25288 1.00457 0.95193 0.95640 1.70051 1.36350 1.22331 1.21080 0.85648 0.80641 0.78638 0.78501 1.19110 1.20164 1.20145 1.21104 1.00565 1.02514 1.00946 1.20491 0.93342 0.96862 0.96732 1.22066 1.00918 0.97522 0.83205 1.22473 0.99599 0.83185 0.93163 0.90698 1.22072 0.97412 0.94496 0.85240 1.86528 1.72464 1.61488 1.16566 1.88056 1.71929 1.24975 1.43257 0.91441 0.91127 0.91903 0.88327 0.90451 0.89049 0.88927 0.87418 0.86526 0.92106 0.85577 0.87920 0.90786 0.87887 0.91724 0.92529 0.77265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.48 8.81 37.16 0.33 -1.16 16 2 C 0.07 0.56 3.92 -26.58 -0.10 0.45 16 3 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 4 C 0.08 0.58 5.92 -3.53 -0.02 0.56 16 5 N -0.62 -6.64 2.54 -172.27 -0.44 -7.08 16 6 C 0.51 7.22 7.70 -10.99 -0.08 7.14 16 7 O -0.52 -9.70 15.50 5.55 0.09 -9.61 16 8 C -0.08 -0.97 4.20 -29.03 -0.12 -1.09 16 9 C -0.17 -3.00 4.38 -104.58 -0.46 -3.46 16 10 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 11 C -0.19 -4.20 9.99 -39.39 -0.39 -4.60 16 12 C 0.16 3.93 6.65 -39.11 -0.26 3.67 16 13 O -0.18 -5.21 9.76 0.04 0.00 -5.21 16 14 C -0.39 -11.15 9.49 30.88 0.29 -10.85 16 15 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -25.71 13.67 55.48 0.76 -24.95 16 18 Si 0.94 20.91 29.55 -169.99 -5.02 15.88 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 C -0.23 -5.24 9.17 -39.39 -0.36 -5.60 16 23 C -0.06 -1.07 9.69 -39.61 -0.38 -1.45 16 24 C 0.09 0.86 5.93 -3.53 -0.02 0.84 16 25 C 0.07 0.71 2.67 -26.58 -0.07 0.63 16 26 H 0.08 0.81 6.26 -51.93 -0.32 0.49 16 27 C 0.09 0.65 6.71 37.16 0.25 0.90 16 28 O -0.57 -4.76 13.63 -39.97 -0.54 -5.31 16 29 O -0.36 -3.63 10.19 -39.97 -0.41 -4.04 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.62 6.12 -51.93 -0.32 0.31 16 33 H 0.10 0.58 6.05 -51.93 -0.31 0.26 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.93 7.60 -51.93 -0.39 0.53 16 36 H 0.09 0.93 7.96 -51.93 -0.41 0.52 16 37 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.13 2.85 5.64 -52.49 -0.30 2.55 16 41 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.10 1.17 7.08 -51.93 -0.37 0.80 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.38 1.33 9.12 45.56 0.42 1.75 16 LS Contribution 377.08 15.07 5.68 5.68 Total: -1.00 -36.71 377.08 -7.42 -44.13 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.65 Total: 5.03 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -1.89 Total: -14.52 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: 0.32 Total: -32.04 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.87 Total: -24.17 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.71 -7.42 -44.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188006731.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.426 kcal (2) G-P(sol) polarization free energy of solvation -36.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds