Wall clock time and date at job start Tue Mar 31 2020 19:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.51494 * 2 1 4 4 C 1.53297 * 109.55624 * 239.87843 * 2 1 3 5 5 N 1.47156 * 108.38243 * 292.35549 * 4 2 1 6 6 C 1.34774 * 120.98552 * 129.44307 * 5 4 2 7 7 O 1.21283 * 120.00047 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.99792 * 0.02562 * 6 5 4 9 9 C 1.50701 * 109.47309 * 180.02562 * 8 6 5 10 10 C 1.38298 * 119.92703 * 269.73153 * 9 8 6 11 11 C 1.38108 * 120.06675 * 179.72362 * 10 9 8 12 12 C 1.38879 * 119.92888 * 0.54260 * 11 10 9 13 13 O 1.35751 * 120.07022 * 179.74771 * 12 11 10 14 14 C 1.34831 * 117.00026 * 174.44103 * 13 12 11 15 15 H 1.07995 * 119.99739 * 5.06173 * 14 13 12 16 16 C 1.38649 * 119.99692 * 185.05639 * 14 13 12 17 17 N 1.31552 * 120.00170 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99768 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46944 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47022 * 120.00222 * 18 16 14 21 21 H 1.48501 * 109.47294 * 239.99968 * 18 16 14 22 22 C 1.38880 * 119.86319 * 359.72805 * 12 11 10 23 23 C 1.38104 * 119.92893 * 359.97438 * 22 12 11 24 24 C 1.47152 * 118.03280 * 309.46104 * 5 4 2 25 25 C 1.53295 * 108.38389 * 50.53725 * 24 5 4 26 26 H 1.09006 * 109.55536 * 67.64909 * 25 24 5 27 27 C 1.53004 * 109.51216 * 187.77182 * 25 24 5 28 28 O 1.42898 * 109.47049 * 184.74661 * 27 25 24 29 29 O 1.42957 * 109.22320 * 307.69506 * 25 24 5 30 30 H 1.08992 * 109.47094 * 299.99736 * 1 2 3 31 31 H 1.08998 * 109.46614 * 59.99686 * 1 2 3 32 32 H 1.08993 * 109.46810 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.68272 * 52.07183 * 4 2 1 34 34 H 1.08996 * 109.68311 * 172.63322 * 4 2 1 35 35 H 1.09002 * 109.47241 * 300.00432 * 8 6 5 36 36 H 1.09001 * 109.47059 * 60.00179 * 8 6 5 37 37 H 1.07999 * 119.97021 * 359.97438 * 10 9 8 38 38 H 1.07999 * 120.03823 * 180.26839 * 11 10 9 39 39 H 0.97010 * 120.00040 * 180.02562 * 17 16 14 40 40 H 1.07998 * 120.03788 * 179.97438 * 22 12 11 41 41 H 1.07998 * 119.96728 * 179.97438 * 23 22 12 42 42 H 1.09005 * 109.68623 * 290.81232 * 24 5 4 43 43 H 1.09001 * 109.68072 * 170.26263 * 24 5 4 44 44 H 1.09001 * 109.47018 * 304.74458 * 27 25 24 45 45 H 1.09002 * 109.47262 * 64.74591 * 27 25 24 46 46 H 0.96703 * 113.99940 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0431 -0.7249 -1.2495 5 7 1.6980 -2.1507 -1.1334 6 6 1.0738 -2.7975 -2.1376 7 8 0.7972 -3.9728 -2.0226 8 6 0.7194 -2.0603 -3.4033 9 6 0.0337 -3.0029 -4.3585 10 6 0.7813 -3.7267 -5.2695 11 6 0.1565 -4.5956 -6.1423 12 6 -1.2251 -4.7338 -6.1122 13 8 -1.8427 -5.5832 -6.9723 14 6 -3.1704 -5.7566 -6.8138 15 1 -3.7082 -5.1700 -6.0837 16 6 -3.8452 -6.6878 -7.5883 17 7 -3.1899 -7.4026 -8.4773 18 14 -5.6848 -6.9275 -7.3693 19 1 -6.1815 -6.0085 -6.3139 20 1 -6.3782 -6.6321 -8.6488 21 1 -5.9571 -8.3321 -6.9716 22 6 -1.9735 -4.0013 -5.1999 23 6 -1.3422 -3.1387 -4.3256 24 6 2.0542 -2.8493 0.1118 25 6 1.5406 -2.0209 1.2949 26 1 0.4505 -2.0289 1.3001 27 6 2.0622 -2.6195 2.6027 28 8 1.4948 -1.9149 3.7089 29 8 2.0076 -0.6759 1.1657 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.5716 -0.3043 -2.1376 34 1 3.1251 -0.6137 -1.3200 35 1 0.0503 -1.2330 -3.1667 36 1 1.6278 -1.6725 -3.8643 37 1 1.8552 -3.6153 -5.2957 38 1 0.7412 -5.1638 -6.8506 39 1 -3.6622 -8.0539 -9.0195 40 1 -3.0481 -4.1063 -5.1743 41 1 -1.9236 -2.5685 -3.6162 42 1 3.1373 -2.9520 0.1783 43 1 1.5900 -3.8355 0.1251 44 1 1.7806 -3.6711 2.6588 45 1 3.1482 -2.5320 2.6347 46 1 1.7818 -2.2419 4.5725 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188006731.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:58 Heat of formation + Delta-G solvation = -150.404943 kcal Electronic energy + Delta-G solvation = -28801.172996 eV Core-core repulsion = 24655.904464 eV Total energy + Delta-G solvation = -4145.268533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.69454 -40.76267 -39.72758 -38.18064 -37.62632 -35.75758 -34.43304 -33.91809 -32.76839 -31.78900 -30.85621 -28.56996 -27.70023 -27.29285 -25.91313 -23.71615 -23.64505 -22.55389 -21.37811 -20.04959 -19.81817 -18.84278 -18.45549 -18.29478 -17.79069 -17.00106 -16.89498 -16.45883 -16.23969 -16.08351 -15.74767 -15.66412 -15.50185 -15.18837 -15.06037 -14.80588 -14.53088 -14.41308 -14.21667 -14.03348 -13.62128 -13.50516 -13.15295 -12.98890 -12.93666 -12.77132 -12.49973 -12.37017 -12.29212 -12.20700 -12.15739 -12.10313 -11.57419 -11.21283 -11.18642 -10.91628 -10.90036 -10.73054 -9.77269 -9.57200 -8.91057 -8.48288 -6.16353 0.60625 0.65328 1.33203 1.41655 1.51932 1.62261 1.85817 2.16656 2.65412 2.81553 3.13840 3.18157 3.51390 3.65478 3.78089 3.84327 3.94267 3.97870 4.02772 4.08464 4.18177 4.25562 4.28220 4.36722 4.41968 4.46514 4.53206 4.56664 4.59652 4.64599 4.71688 4.78813 4.87081 4.89707 5.01742 5.08446 5.13938 5.23669 5.29222 5.39126 5.55975 5.70904 5.76304 6.02217 6.15608 6.19617 6.34043 6.87771 6.96418 7.17527 7.77698 8.75372 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019872 B = 0.002245 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.709681 B =12471.815099 C =12908.819870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.069 3.931 3 H 0.141 0.859 4 C 0.073 3.927 5 N -0.614 5.614 6 C 0.515 3.485 7 O -0.577 6.577 8 C -0.076 4.076 9 C -0.145 4.145 10 C -0.056 4.056 11 C -0.206 4.206 12 C 0.112 3.888 13 O -0.233 6.233 14 C -0.413 4.413 15 H 0.100 0.900 16 C -0.024 4.024 17 N -0.921 5.921 18 Si 1.020 2.980 19 H -0.253 1.253 20 H -0.265 1.265 21 H -0.269 1.269 22 C -0.244 4.244 23 C -0.060 4.060 24 C 0.086 3.914 25 C 0.079 3.921 26 H 0.055 0.945 27 C 0.085 3.915 28 O -0.588 6.588 29 O -0.377 6.377 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.038 0.962 33 H 0.124 0.876 34 H 0.096 0.904 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.147 0.853 38 H 0.112 0.888 39 H 0.273 0.727 40 H 0.117 0.883 41 H 0.136 0.864 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.583 18.556 21.623 31.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.011 3.989 3 H 0.158 0.842 4 C -0.049 4.049 5 N -0.349 5.349 6 C 0.305 3.695 7 O -0.455 6.455 8 C -0.115 4.115 9 C -0.147 4.147 10 C -0.074 4.074 11 C -0.225 4.225 12 C 0.062 3.938 13 O -0.140 6.140 14 C -0.489 4.489 15 H 0.117 0.883 16 C -0.222 4.222 17 N -0.559 5.559 18 Si 0.839 3.161 19 H -0.176 1.176 20 H -0.190 1.190 21 H -0.194 1.194 22 C -0.263 4.263 23 C -0.078 4.078 24 C -0.037 4.037 25 C 0.020 3.980 26 H 0.073 0.927 27 C 0.007 3.993 28 O -0.397 6.397 29 O -0.296 6.296 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.058 0.942 33 H 0.142 0.858 34 H 0.114 0.886 35 H 0.146 0.854 36 H 0.151 0.849 37 H 0.165 0.835 38 H 0.131 0.869 39 H 0.082 0.918 40 H 0.134 0.866 41 H 0.154 0.846 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 12.329 18.071 21.003 30.327 hybrid contribution -0.866 -1.268 0.016 1.535 sum 11.463 16.804 21.019 29.250 Atomic orbital electron populations 1.22390 0.96170 1.01757 1.03780 1.22855 0.94000 0.97713 0.84325 0.84161 1.22813 1.02823 0.78734 1.00524 1.48169 1.59150 1.12038 1.15529 1.21250 0.75995 0.86946 0.85330 1.90747 1.54668 1.18520 1.81606 1.20571 1.03590 0.97176 0.90173 1.19223 0.92986 1.02693 0.99748 1.20870 0.99926 0.93435 0.93206 1.20446 0.91100 1.05670 1.05278 1.19940 0.93359 0.90502 0.89977 1.83938 1.23971 1.56841 1.49253 1.21848 0.80830 1.22943 1.23300 0.88306 1.26608 1.06053 0.94492 0.95010 1.70193 1.38805 1.23961 1.22988 0.84521 0.73563 0.78908 0.79129 1.17591 1.18997 1.19406 1.21217 1.00277 1.03322 1.01475 1.20903 0.94669 0.96061 0.96133 1.22087 1.01611 0.96748 0.83260 1.22394 0.98450 0.83260 0.93901 0.92707 1.22119 0.98009 0.94810 0.84334 1.86465 1.73054 1.62217 1.17936 1.88048 1.72097 1.25007 1.44483 0.92113 0.89141 0.94248 0.85842 0.88592 0.85443 0.84917 0.83520 0.86946 0.91825 0.86571 0.84618 0.89208 0.89852 0.90567 0.91227 0.75001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 8.81 71.98 0.63 -1.74 16 2 C 0.07 0.78 3.92 30.69 0.12 0.90 16 3 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 4 C 0.07 0.72 5.92 86.35 0.51 1.23 16 5 N -0.61 -10.99 2.54 -817.34 -2.08 -13.06 16 6 C 0.51 12.72 7.70 87.66 0.68 13.39 16 7 O -0.58 -20.92 15.50 -3.04 -0.05 -20.97 16 8 C -0.08 -1.50 4.20 29.10 0.12 -1.38 16 9 C -0.15 -4.61 4.38 -19.84 -0.09 -4.70 16 10 C -0.06 -1.98 9.69 22.25 0.22 -1.76 16 11 C -0.21 -9.26 9.99 22.39 0.22 -9.04 16 12 C 0.11 5.90 6.65 22.58 0.15 6.05 16 13 O -0.23 -14.64 9.76 -22.76 -0.22 -14.86 16 14 C -0.41 -25.00 9.49 67.92 0.64 -24.35 16 15 H 0.10 5.54 5.20 -2.91 -0.02 5.52 16 16 C -0.02 -1.43 5.49 84.83 0.47 -0.97 16 17 N -0.92 -58.03 13.67 21.61 0.30 -57.73 16 18 Si 1.02 44.24 29.55 68.60 2.03 46.27 16 19 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 20 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 22 C -0.24 -11.25 9.17 22.39 0.21 -11.05 16 23 C -0.06 -2.16 9.69 22.25 0.22 -1.95 16 24 C 0.09 1.55 5.93 86.35 0.51 2.06 16 25 C 0.08 1.36 2.67 30.69 0.08 1.44 16 26 H 0.05 1.16 6.26 -2.38 -0.01 1.14 16 27 C 0.09 1.15 6.71 71.98 0.48 1.63 16 28 O -0.59 -9.02 13.63 -144.45 -1.97 -10.99 16 29 O -0.38 -6.48 10.19 -144.45 -1.47 -7.96 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.77 16 32 H 0.04 0.70 6.12 -2.39 -0.01 0.69 16 33 H 0.12 0.61 6.05 -2.39 -0.01 0.60 16 34 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.13 1.72 7.60 -2.39 -0.02 1.70 16 36 H 0.13 1.70 7.96 -2.39 -0.02 1.68 16 37 H 0.15 3.98 8.06 -2.91 -0.02 3.95 16 38 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 39 H 0.27 15.65 8.31 -92.70 -0.77 14.87 16 40 H 0.12 5.46 5.64 -2.91 -0.02 5.45 16 41 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 42 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 43 H 0.08 1.86 7.08 -2.39 -0.02 1.84 16 44 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.40 2.16 9.12 -74.06 -0.68 1.48 16 Total: -1.00 -87.89 377.08 2.05 -85.84 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: 0.34 Total: 23.68 kcal Atomic # 6 Polarization: -35.40 SS G_CDS: 5.18 Total: -30.22 kcal Atomic # 7 Polarization: -69.02 SS G_CDS: -1.78 Total: -70.80 kcal Atomic # 8 Polarization: -51.07 SS G_CDS: -3.71 Total: -54.77 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -87.89 2.05 -85.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188006731.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.563 kcal (2) G-P(sol) polarization free energy of solvation -87.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds