Wall clock time and date at job start Tue Mar 31 2020 19:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.54885 * 2 1 4 4 C 1.53708 * 109.44316 * 120.25656 * 2 1 3 5 5 N 1.47154 * 108.16286 * 172.37430 * 4 2 1 6 6 C 1.34776 * 120.98420 * 129.43286 * 5 4 2 7 7 O 1.21280 * 120.00295 * 179.72006 * 6 5 4 8 8 C 1.50705 * 119.99599 * 359.97438 * 6 5 4 9 9 C 1.50702 * 109.46931 * 179.72346 * 8 6 5 10 10 C 1.38310 * 119.92916 * 269.72918 * 9 8 6 11 11 C 1.38095 * 120.06474 * 179.72902 * 10 9 8 12 12 C 1.38877 * 119.93320 * 0.54035 * 11 10 9 13 13 O 1.35754 * 120.07082 * 179.75441 * 12 11 10 14 14 C 1.34825 * 117.00166 * 174.44190 * 13 12 11 15 15 H 1.08000 * 119.99720 * 5.05374 * 14 13 12 16 16 C 1.38655 * 120.00141 * 185.05371 * 14 13 12 17 17 N 1.31561 * 119.99628 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00161 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47009 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47043 * 119.99966 * 18 16 14 21 21 H 1.48499 * 109.47291 * 239.99855 * 18 16 14 22 22 C 1.38881 * 119.86352 * 359.72850 * 12 11 10 23 23 C 1.38103 * 119.92878 * 0.02562 * 22 12 11 24 24 C 1.47156 * 118.03452 * 309.16190 * 5 4 2 25 25 C 1.53297 * 108.38254 * 50.78593 * 24 5 4 26 26 H 1.08997 * 109.51261 * 67.62296 * 25 24 5 27 27 C 1.53007 * 109.51030 * 187.77291 * 25 24 5 28 28 O 1.42901 * 109.46930 * 184.99758 * 27 25 24 29 29 O 1.42957 * 109.51250 * 239.87441 * 2 1 3 30 30 H 1.08998 * 109.46897 * 180.12749 * 1 2 3 31 31 H 1.08997 * 109.47128 * 300.12784 * 1 2 3 32 32 H 1.08998 * 109.47164 * 60.12606 * 1 2 3 33 33 H 1.09001 * 109.83721 * 52.69672 * 4 2 1 34 34 H 1.08996 * 109.75460 * 292.00519 * 4 2 1 35 35 H 1.08998 * 109.46758 * 299.72148 * 8 6 5 36 36 H 1.09002 * 109.46987 * 59.72279 * 8 6 5 37 37 H 1.07998 * 119.96279 * 359.97438 * 10 9 8 38 38 H 1.08001 * 120.02851 * 180.27239 * 11 10 9 39 39 H 0.96998 * 119.99349 * 180.02562 * 17 16 14 40 40 H 1.07999 * 120.03693 * 179.97438 * 22 12 11 41 41 H 1.07999 * 119.96492 * 180.02562 * 23 22 12 42 42 H 1.09002 * 109.68287 * 170.50192 * 24 5 4 43 43 H 1.08996 * 109.68182 * 291.06319 * 24 5 4 44 44 H 1.09000 * 109.46888 * 304.99625 * 27 25 24 45 45 H 1.08996 * 109.46946 * 64.99605 * 27 25 24 46 46 H 0.96695 * 114.00074 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0417 -0.7303 1.2520 5 7 3.5012 -0.8761 1.1336 6 6 4.3193 -0.5041 2.1380 7 8 5.5194 -0.6368 2.0234 8 6 3.7425 0.0716 3.4057 9 6 4.8596 0.3967 4.3635 10 6 5.2894 -0.5546 5.2708 11 6 6.3167 -0.2615 6.1460 12 6 6.9107 0.9936 6.1221 13 8 7.9173 1.2863 6.9845 14 6 8.5265 2.4794 6.8321 15 1 8.1553 3.1861 6.1046 16 6 9.6295 2.7990 7.6091 17 7 10.0819 1.9378 8.4948 18 14 10.4740 4.4517 7.3974 19 1 9.7767 5.2324 6.3440 20 1 10.4272 5.1993 8.6796 21 1 11.8888 4.2374 7.0006 22 6 6.4731 1.9485 5.2135 23 6 5.4488 1.6477 4.3374 24 6 4.0407 -1.4457 -0.1113 25 6 3.4313 -0.6854 -1.2947 26 1 3.8030 0.3392 -1.2995 27 6 3.8213 -1.3777 -2.6023 28 8 3.3517 -0.6049 -3.7088 29 8 2.0075 -0.6763 -1.1655 30 1 -0.3633 -1.0277 0.0023 31 1 -0.3633 0.5158 0.8888 32 1 -0.3633 0.5119 -0.8911 33 1 1.5788 -1.7148 1.3210 34 1 1.8019 -0.1483 2.1418 35 1 3.1878 0.9804 3.1724 36 1 3.0720 -0.6561 3.8630 37 1 4.8239 -1.5288 5.2922 38 1 6.6548 -1.0063 6.8513 39 1 10.8532 2.1616 9.0387 40 1 6.9327 2.9256 5.1927 41 1 5.1083 2.3897 3.6304 42 1 5.1252 -1.3375 -0.1248 43 1 3.7756 -2.5009 -0.1773 44 1 4.9062 -1.4675 -2.6563 45 1 3.3724 -2.3703 -2.6358 46 1 3.5642 -0.9848 -4.5723 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188006757.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:02 Heat of formation + Delta-G solvation = -125.714728 kcal Electronic energy + Delta-G solvation = -28500.797412 eV Core-core repulsion = 24356.599528 eV Total energy + Delta-G solvation = -4144.197885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.67107 -39.19759 -38.50661 -37.04094 -36.47642 -34.86921 -33.62254 -32.43939 -31.43118 -30.14551 -30.02504 -27.28364 -26.80004 -25.55558 -24.72152 -22.33981 -21.95864 -21.63602 -20.72932 -19.25360 -17.95812 -17.80122 -17.32928 -17.25750 -16.93903 -16.16822 -15.74622 -15.57069 -14.95627 -14.64217 -14.55096 -14.43263 -14.20095 -13.97688 -13.66659 -13.50033 -13.32659 -13.14460 -12.88612 -12.70764 -12.66312 -12.46745 -12.37281 -11.91901 -11.80964 -11.51131 -11.42711 -11.25393 -11.00719 -10.83784 -10.73115 -10.58234 -10.52918 -10.40136 -10.32618 -9.73771 -9.29846 -8.80206 -8.76955 -8.12900 -7.14302 -6.42467 -4.00877 2.23286 2.27512 2.64363 2.74063 3.14091 3.15875 3.18175 3.21292 3.73147 3.99068 4.32789 4.39933 4.48365 4.61724 4.65729 4.76285 4.81667 4.90864 4.93469 5.04072 5.07750 5.10504 5.18734 5.24431 5.26645 5.32443 5.33560 5.47431 5.51217 5.60545 5.63584 5.73805 5.77068 5.86524 6.15431 6.24183 6.43918 6.72083 6.81309 6.93229 7.07418 7.19593 7.22123 7.26951 7.39010 7.47404 7.86013 8.03040 8.17741 9.03425 9.74015 10.75764 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019283 B = 0.002177 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.707322 B =12861.533646 C =13382.607193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.072 3.928 3 H 0.064 0.936 4 C 0.078 3.922 5 N -0.626 5.626 6 C 0.514 3.486 7 O -0.515 6.515 8 C -0.077 4.077 9 C -0.172 4.172 10 C -0.059 4.059 11 C -0.191 4.191 12 C 0.157 3.843 13 O -0.178 6.178 14 C -0.390 4.390 15 H 0.092 0.908 16 C 0.038 3.962 17 N -0.863 5.863 18 Si 0.941 3.059 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.232 4.232 23 C -0.056 4.056 24 C 0.086 3.914 25 C 0.080 3.920 26 H 0.070 0.930 27 C 0.087 3.913 28 O -0.566 6.566 29 O -0.366 6.366 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.117 0.883 39 H 0.269 0.731 40 H 0.127 0.873 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.057 0.943 46 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.831 -5.985 -19.468 27.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.014 3.986 3 H 0.082 0.918 4 C -0.045 4.045 5 N -0.363 5.363 6 C 0.303 3.697 7 O -0.389 6.389 8 C -0.117 4.117 9 C -0.173 4.173 10 C -0.077 4.077 11 C -0.210 4.210 12 C 0.103 3.897 13 O -0.082 6.082 14 C -0.466 4.466 15 H 0.110 0.890 16 C -0.166 4.166 17 N -0.498 5.498 18 Si 0.766 3.234 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.201 1.201 22 C -0.251 4.251 23 C -0.074 4.074 24 C -0.038 4.038 25 C 0.021 3.979 26 H 0.088 0.912 27 C 0.008 3.992 28 O -0.371 6.371 29 O -0.285 6.285 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.126 0.874 38 H 0.135 0.865 39 H 0.079 0.921 40 H 0.144 0.856 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -18.186 -5.885 -18.777 26.794 hybrid contribution 0.784 0.541 -0.448 1.052 sum -17.402 -5.344 -19.225 26.476 Atomic orbital electron populations 1.21728 0.92041 1.03265 1.03027 1.22582 0.95638 0.95522 0.84893 0.91756 1.22601 0.80321 1.02015 0.99580 1.48232 1.06750 1.64896 1.16381 1.21151 0.86794 0.77232 0.84496 1.90743 1.14789 1.52958 1.80382 1.20433 0.97926 1.01514 0.91829 1.18624 1.02077 0.95725 1.00896 1.20391 0.95650 0.97207 0.94491 1.20152 1.00975 0.95642 1.04260 1.19382 0.88794 0.92773 0.88728 1.83976 1.40670 1.36951 1.46557 1.21377 1.11233 0.91255 1.22784 0.89034 1.25293 0.96004 0.99656 0.95640 1.70054 1.23840 1.34791 1.21130 0.85645 0.79158 0.80107 0.78499 1.19109 1.20164 1.20146 1.21105 1.01983 1.01059 1.00977 1.20497 0.95008 0.95207 0.96722 1.22077 1.01075 0.97416 0.83184 1.22446 0.82205 0.99981 0.93257 0.91183 1.22066 0.97849 0.94095 0.85160 1.86527 1.81978 1.51997 1.16575 1.88000 1.20126 1.77273 1.43148 0.91530 0.90578 0.91340 0.90416 0.88351 0.89020 0.88892 0.87412 0.86519 0.92108 0.85564 0.87894 0.87804 0.90747 0.91644 0.92463 0.77232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.57 37.16 0.36 -0.48 16 2 C 0.07 0.59 3.41 -26.36 -0.09 0.50 16 3 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 4 C 0.08 0.61 5.85 -3.32 -0.02 0.59 16 5 N -0.63 -6.91 3.01 -172.02 -0.52 -7.43 16 6 C 0.51 7.35 7.70 -10.98 -0.08 7.27 16 7 O -0.52 -9.78 15.50 5.56 0.09 -9.70 16 8 C -0.08 -0.98 4.20 -29.03 -0.12 -1.10 16 9 C -0.17 -3.02 4.38 -104.57 -0.46 -3.48 16 10 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 11 C -0.19 -4.21 9.99 -39.40 -0.39 -4.60 16 12 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 13 O -0.18 -5.22 9.76 0.05 0.00 -5.22 16 14 C -0.39 -11.16 9.49 30.89 0.29 -10.86 16 15 H 0.09 2.44 5.20 -52.49 -0.27 2.16 16 16 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 17 N -0.86 -25.73 13.67 55.48 0.76 -24.97 16 18 Si 0.94 20.93 29.55 -169.99 -5.02 15.91 16 19 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 22 C -0.23 -5.25 9.17 -39.39 -0.36 -5.61 16 23 C -0.06 -1.07 9.69 -39.61 -0.38 -1.46 16 24 C 0.09 0.87 5.92 -3.53 -0.02 0.85 16 25 C 0.08 0.77 3.06 -26.57 -0.08 0.69 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 C 0.09 0.66 6.71 37.16 0.25 0.91 16 28 O -0.57 -4.81 13.63 -39.71 -0.54 -5.35 16 29 O -0.37 -3.76 9.99 -39.71 -0.40 -4.16 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.60 6.05 -51.93 -0.31 0.29 16 35 H 0.09 0.94 7.61 -51.93 -0.40 0.55 16 36 H 0.09 0.94 7.94 -51.93 -0.41 0.53 16 37 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 39 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.13 2.85 5.64 -52.49 -0.30 2.56 16 41 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 42 H 0.10 1.19 7.08 -51.93 -0.37 0.82 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.38 1.34 9.12 45.56 0.42 1.76 16 LS Contribution 381.84 15.07 5.75 5.75 Total: -1.00 -36.86 381.84 -7.59 -44.45 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -5.85 Total: 4.35 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -1.86 Total: -13.64 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 0.24 Total: -32.40 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.85 Total: -24.42 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.86 -7.59 -44.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188006757.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.269 kcal (2) G-P(sol) polarization free energy of solvation -36.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds