Wall clock time and date at job start Tue Mar 31 2020 19:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.54885 * 2 1 4 4 C 1.53708 * 109.44316 * 120.25656 * 2 1 3 5 5 N 1.47154 * 108.16286 * 172.37430 * 4 2 1 6 6 C 1.34776 * 120.98420 * 129.43286 * 5 4 2 7 7 O 1.21280 * 120.00295 * 179.72006 * 6 5 4 8 8 C 1.50705 * 119.99599 * 359.97438 * 6 5 4 9 9 C 1.50702 * 109.46931 * 179.72346 * 8 6 5 10 10 C 1.38310 * 119.92916 * 269.72918 * 9 8 6 11 11 C 1.38095 * 120.06474 * 179.72902 * 10 9 8 12 12 C 1.38877 * 119.93320 * 0.54035 * 11 10 9 13 13 O 1.35754 * 120.07082 * 179.75441 * 12 11 10 14 14 C 1.34825 * 117.00166 * 174.44190 * 13 12 11 15 15 H 1.08000 * 119.99720 * 5.05374 * 14 13 12 16 16 C 1.38655 * 120.00141 * 185.05371 * 14 13 12 17 17 N 1.31561 * 119.99628 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00161 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47009 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47043 * 119.99966 * 18 16 14 21 21 H 1.48499 * 109.47291 * 239.99855 * 18 16 14 22 22 C 1.38881 * 119.86352 * 359.72850 * 12 11 10 23 23 C 1.38103 * 119.92878 * 0.02562 * 22 12 11 24 24 C 1.47156 * 118.03452 * 309.16190 * 5 4 2 25 25 C 1.53297 * 108.38254 * 50.78593 * 24 5 4 26 26 H 1.08997 * 109.51261 * 67.62296 * 25 24 5 27 27 C 1.53007 * 109.51030 * 187.77291 * 25 24 5 28 28 O 1.42901 * 109.46930 * 184.99758 * 27 25 24 29 29 O 1.42957 * 109.51250 * 239.87441 * 2 1 3 30 30 H 1.08998 * 109.46897 * 180.12749 * 1 2 3 31 31 H 1.08997 * 109.47128 * 300.12784 * 1 2 3 32 32 H 1.08998 * 109.47164 * 60.12606 * 1 2 3 33 33 H 1.09001 * 109.83721 * 52.69672 * 4 2 1 34 34 H 1.08996 * 109.75460 * 292.00519 * 4 2 1 35 35 H 1.08998 * 109.46758 * 299.72148 * 8 6 5 36 36 H 1.09002 * 109.46987 * 59.72279 * 8 6 5 37 37 H 1.07998 * 119.96279 * 359.97438 * 10 9 8 38 38 H 1.08001 * 120.02851 * 180.27239 * 11 10 9 39 39 H 0.96998 * 119.99349 * 180.02562 * 17 16 14 40 40 H 1.07999 * 120.03693 * 179.97438 * 22 12 11 41 41 H 1.07999 * 119.96492 * 180.02562 * 23 22 12 42 42 H 1.09002 * 109.68287 * 170.50192 * 24 5 4 43 43 H 1.08996 * 109.68182 * 291.06319 * 24 5 4 44 44 H 1.09000 * 109.46888 * 304.99625 * 27 25 24 45 45 H 1.08996 * 109.46946 * 64.99605 * 27 25 24 46 46 H 0.96695 * 114.00074 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0417 -0.7303 1.2520 5 7 3.5012 -0.8761 1.1336 6 6 4.3193 -0.5041 2.1380 7 8 5.5194 -0.6368 2.0234 8 6 3.7425 0.0716 3.4057 9 6 4.8596 0.3967 4.3635 10 6 5.2894 -0.5546 5.2708 11 6 6.3167 -0.2615 6.1460 12 6 6.9107 0.9936 6.1221 13 8 7.9173 1.2863 6.9845 14 6 8.5265 2.4794 6.8321 15 1 8.1553 3.1861 6.1046 16 6 9.6295 2.7990 7.6091 17 7 10.0819 1.9378 8.4948 18 14 10.4740 4.4517 7.3974 19 1 9.7767 5.2324 6.3440 20 1 10.4272 5.1993 8.6796 21 1 11.8888 4.2374 7.0006 22 6 6.4731 1.9485 5.2135 23 6 5.4488 1.6477 4.3374 24 6 4.0407 -1.4457 -0.1113 25 6 3.4313 -0.6854 -1.2947 26 1 3.8030 0.3392 -1.2995 27 6 3.8213 -1.3777 -2.6023 28 8 3.3517 -0.6049 -3.7088 29 8 2.0075 -0.6763 -1.1655 30 1 -0.3633 -1.0277 0.0023 31 1 -0.3633 0.5158 0.8888 32 1 -0.3633 0.5119 -0.8911 33 1 1.5788 -1.7148 1.3210 34 1 1.8019 -0.1483 2.1418 35 1 3.1878 0.9804 3.1724 36 1 3.0720 -0.6561 3.8630 37 1 4.8239 -1.5288 5.2922 38 1 6.6548 -1.0063 6.8513 39 1 10.8532 2.1616 9.0387 40 1 6.9327 2.9256 5.1927 41 1 5.1083 2.3897 3.6304 42 1 5.1252 -1.3375 -0.1248 43 1 3.7756 -2.5009 -0.1773 44 1 4.9062 -1.4675 -2.6563 45 1 3.3724 -2.3703 -2.6358 46 1 3.5642 -0.9848 -4.5723 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188006757.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:01 Heat of formation + Delta-G solvation = -153.805856 kcal Electronic energy + Delta-G solvation = -28502.015535 eV Core-core repulsion = 24356.599528 eV Total energy + Delta-G solvation = -4145.416008 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.59672 -40.73697 -39.69093 -38.18679 -37.64307 -35.79278 -34.46612 -34.21028 -32.84411 -31.79248 -30.79715 -28.55580 -27.54343 -27.24080 -25.90813 -23.65014 -22.99256 -22.64073 -22.00287 -20.27713 -19.83863 -18.84598 -18.42452 -18.27868 -17.94247 -17.09252 -16.80147 -16.39750 -16.31084 -16.09790 -15.96538 -15.52984 -15.46268 -15.12631 -15.09185 -14.82070 -14.50371 -14.37686 -14.06425 -13.75372 -13.60588 -13.57269 -13.09837 -13.05882 -12.98323 -12.81762 -12.51967 -12.45248 -12.29661 -12.22183 -12.10545 -12.02758 -11.72450 -11.23291 -11.18844 -10.98268 -10.91150 -10.74162 -9.77610 -9.62592 -8.91454 -8.48385 -6.16413 0.60386 0.64753 1.33254 1.41668 1.51990 1.59234 1.82569 2.16660 2.55991 2.81108 3.13282 3.14592 3.51069 3.66432 3.74665 3.79151 3.90612 3.96906 4.02285 4.09751 4.17909 4.24074 4.27942 4.37762 4.40129 4.45013 4.54824 4.56803 4.60937 4.63739 4.73716 4.78879 4.84464 4.95886 5.06520 5.07022 5.13651 5.28196 5.31010 5.36176 5.55559 5.70683 5.75871 6.02144 6.14967 6.18313 6.31207 6.87052 6.96319 7.14140 7.77535 8.75288 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019283 B = 0.002177 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.707322 B =12861.533646 C =13382.607193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.066 3.934 3 H 0.056 0.944 4 C 0.075 3.925 5 N -0.620 5.620 6 C 0.514 3.486 7 O -0.575 6.575 8 C -0.076 4.076 9 C -0.146 4.146 10 C -0.056 4.056 11 C -0.205 4.205 12 C 0.113 3.887 13 O -0.233 6.233 14 C -0.413 4.413 15 H 0.100 0.900 16 C -0.025 4.025 17 N -0.921 5.921 18 Si 1.020 2.980 19 H -0.253 1.253 20 H -0.265 1.265 21 H -0.269 1.269 22 C -0.244 4.244 23 C -0.060 4.060 24 C 0.086 3.914 25 C 0.083 3.917 26 H 0.049 0.951 27 C 0.087 3.913 28 O -0.589 6.589 29 O -0.380 6.380 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.147 0.853 38 H 0.113 0.887 39 H 0.273 0.727 40 H 0.117 0.883 41 H 0.136 0.864 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.207 -6.013 -21.605 31.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.008 3.992 3 H 0.074 0.926 4 C -0.047 4.047 5 N -0.354 5.354 6 C 0.304 3.696 7 O -0.453 6.453 8 C -0.115 4.115 9 C -0.147 4.147 10 C -0.074 4.074 11 C -0.225 4.225 12 C 0.062 3.938 13 O -0.140 6.140 14 C -0.489 4.489 15 H 0.117 0.883 16 C -0.222 4.222 17 N -0.559 5.559 18 Si 0.839 3.161 19 H -0.176 1.176 20 H -0.190 1.190 21 H -0.194 1.194 22 C -0.263 4.263 23 C -0.078 4.078 24 C -0.037 4.037 25 C 0.024 3.976 26 H 0.067 0.933 27 C 0.009 3.991 28 O -0.398 6.398 29 O -0.300 6.300 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.152 0.848 37 H 0.165 0.835 38 H 0.131 0.869 39 H 0.082 0.918 40 H 0.135 0.865 41 H 0.154 0.846 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.097 0.903 45 H 0.089 0.911 46 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -21.663 -5.939 -20.982 30.738 hybrid contribution 1.489 0.372 -0.050 1.536 sum -20.174 -5.567 -21.032 29.670 Atomic orbital electron populations 1.21738 0.90180 1.03811 1.03814 1.22778 0.97049 0.94974 0.84445 0.92571 1.22903 0.77948 1.03464 1.00398 1.48261 1.08057 1.63344 1.15721 1.21302 0.86169 0.76788 0.85351 1.90745 1.17239 1.55754 1.81610 1.20574 0.96513 1.04386 0.90023 1.19223 1.01506 0.94201 0.99797 1.20869 0.94215 0.99145 0.93175 1.20443 1.02070 0.94693 1.05267 1.19941 0.89150 0.94732 0.89937 1.83937 1.43065 1.37731 1.49246 1.21851 1.11972 0.91712 1.23394 0.88300 1.26614 0.96406 1.04154 0.95000 1.70196 1.25117 1.37599 1.23028 0.84517 0.77793 0.74657 0.79133 1.17593 1.18995 1.19406 1.21218 1.03220 1.00338 1.01511 1.20910 0.93791 0.96972 0.96127 1.22108 1.00134 0.98363 0.83138 1.22401 0.82110 0.98945 0.94168 0.93282 1.22107 0.98741 0.94145 0.84136 1.86463 1.82351 1.52980 1.17968 1.88001 1.20130 1.77503 1.44335 0.91080 0.88292 0.92102 0.88724 0.85785 0.85403 0.84850 0.83491 0.86911 0.91824 0.86546 0.84603 0.89592 0.89118 0.90324 0.91141 0.74929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.57 71.98 0.69 -0.42 16 2 C 0.07 0.85 3.41 30.83 0.11 0.96 16 3 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 4 C 0.07 0.82 5.85 86.49 0.51 1.32 16 5 N -0.62 -11.57 3.01 -816.53 -2.46 -14.03 16 6 C 0.51 12.94 7.70 87.66 0.68 13.62 16 7 O -0.58 -21.00 15.50 -3.03 -0.05 -21.04 16 8 C -0.08 -1.52 4.20 29.10 0.12 -1.40 16 9 C -0.15 -4.66 4.38 -19.83 -0.09 -4.75 16 10 C -0.06 -1.97 9.69 22.25 0.22 -1.75 16 11 C -0.21 -9.25 9.99 22.39 0.22 -9.03 16 12 C 0.11 5.92 6.65 22.58 0.15 6.07 16 13 O -0.23 -14.62 9.76 -22.73 -0.22 -14.85 16 14 C -0.41 -25.01 9.49 67.92 0.64 -24.36 16 15 H 0.10 5.54 5.20 -2.91 -0.02 5.53 16 16 C -0.02 -1.44 5.49 84.83 0.47 -0.97 16 17 N -0.92 -58.02 13.67 21.61 0.30 -57.72 16 18 Si 1.02 44.25 29.55 68.60 2.03 46.28 16 19 H -0.25 -10.17 7.11 99.48 0.71 -9.47 16 20 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 22 C -0.24 -11.27 9.17 22.39 0.21 -11.06 16 23 C -0.06 -2.19 9.69 22.25 0.22 -1.97 16 24 C 0.09 1.58 5.92 86.35 0.51 2.09 16 25 C 0.08 1.47 3.06 30.70 0.09 1.56 16 26 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 27 C 0.09 1.17 6.71 71.98 0.48 1.65 16 28 O -0.59 -9.13 13.63 -144.70 -1.97 -11.10 16 29 O -0.38 -6.92 9.99 -144.70 -1.45 -8.37 16 30 H 0.07 0.52 8.14 -2.39 -0.02 0.51 16 31 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.12 0.72 6.05 -2.39 -0.01 0.71 16 35 H 0.13 1.76 7.61 -2.39 -0.02 1.75 16 36 H 0.13 1.73 7.94 -2.39 -0.02 1.71 16 37 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 38 H 0.11 5.01 8.06 -2.91 -0.02 4.98 16 39 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 40 H 0.12 5.48 5.64 -2.91 -0.02 5.46 16 41 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 42 H 0.09 1.92 7.08 -2.39 -0.02 1.90 16 43 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.40 2.17 9.12 -74.06 -0.68 1.49 16 Total: -1.00 -87.86 381.84 1.72 -86.14 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.33 Total: 23.13 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: 5.22 Total: -28.44 kcal Atomic # 7 Polarization: -69.59 SS G_CDS: -2.17 Total: -71.75 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -3.69 Total: -55.35 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -87.86 1.72 -86.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188006757.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.666 kcal (2) G-P(sol) polarization free energy of solvation -87.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds