Wall clock time and date at job start Tue Mar 31 2020 19:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00445 * 2 1 4 4 C 1.52992 * 109.47672 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.51465 * 55.09939 * 4 3 2 6 6 C 1.53713 * 109.48997 * 175.36522 * 4 3 2 7 7 N 1.47147 * 108.16577 * 172.39805 * 6 4 3 8 8 C 1.34772 * 120.98612 * 129.42814 * 7 6 4 9 9 O 1.21584 * 120.00353 * 174.64644 * 8 7 6 10 10 C 1.47537 * 119.99706 * 354.65279 * 8 7 6 11 11 C 1.39667 * 120.19980 * 35.16188 * 10 8 7 12 12 C 1.37826 * 119.92259 * 179.97438 * 11 10 8 13 13 C 1.38571 * 120.32293 * 359.97438 * 12 11 10 14 14 C 1.38023 * 120.40302 * 359.78700 * 13 12 11 15 15 C 1.38840 * 120.07001 * 0.46623 * 14 13 12 16 16 O 1.35517 * 120.16039 * 179.78830 * 15 14 13 17 17 C 1.34812 * 117.00318 * 5.60293 * 16 15 14 18 18 H 1.07999 * 119.99613 * 354.93999 * 17 16 15 19 19 C 1.38698 * 120.00197 * 174.66744 * 17 16 15 20 20 N 1.31516 * 119.99983 * 0.27251 * 19 17 16 21 21 Si 1.86794 * 120.00024 * 180.27444 * 19 17 16 22 22 H 1.48509 * 109.47169 * 59.99963 * 21 19 17 23 23 H 1.48497 * 109.47386 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47280 * 300.00078 * 21 19 17 25 25 C 1.47160 * 118.03367 * 309.16149 * 7 6 4 26 26 C 1.53291 * 108.38395 * 50.78325 * 25 7 6 27 27 H 1.09007 * 109.50802 * 187.72592 * 26 25 7 28 28 C 1.52996 * 109.51364 * 67.62764 * 26 25 7 29 29 O 1.42955 * 109.22440 * 307.69545 * 26 25 7 30 30 H 1.09004 * 109.47467 * 299.99968 * 1 2 3 31 31 H 1.09000 * 109.47421 * 59.99953 * 1 2 3 32 32 H 1.09009 * 109.47403 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47040 * 59.99929 * 3 2 1 34 34 H 1.09004 * 109.47242 * 300.00729 * 3 2 1 35 35 H 1.08997 * 109.83681 * 52.71570 * 6 4 3 36 36 H 1.08993 * 109.74326 * 292.02635 * 6 4 3 37 37 H 1.08006 * 120.03678 * 0.02562 * 11 10 8 38 38 H 1.08001 * 119.83581 * 179.97438 * 12 11 10 39 39 H 1.07995 * 119.79739 * 180.02562 * 13 12 11 40 40 H 1.07999 * 119.97094 * 180.25964 * 14 13 12 41 41 H 0.97002 * 120.00152 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.67788 * 170.51197 * 25 7 6 43 43 H 1.09000 * 109.67842 * 291.05618 * 25 7 6 44 44 H 1.08995 * 109.47631 * 59.99113 * 28 26 25 45 45 H 1.08999 * 109.47293 * 180.02562 * 28 26 25 46 46 H 1.09009 * 109.46650 * 299.99396 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8516 0.5700 -0.8434 6 6 4.1606 2.5839 -0.1177 7 7 5.6145 2.4539 0.0684 8 6 6.4781 2.9979 -0.8117 9 8 7.6732 2.9643 -0.5907 10 6 5.9732 3.6343 -2.0433 11 6 4.7633 4.3318 -2.0284 12 6 4.2973 4.9246 -3.1821 13 6 5.0238 4.8327 -4.3586 14 6 6.2235 4.1509 -4.3873 15 6 6.7058 3.5430 -3.2360 16 8 7.8814 2.8694 -3.2631 17 6 8.5917 2.9237 -4.4076 18 1 8.1801 3.4171 -5.2757 19 6 9.8534 2.3508 -4.4687 20 7 10.3546 1.7500 -3.4116 21 14 10.8407 2.4328 -6.0523 22 1 11.0736 3.8533 -6.4175 23 1 12.1459 1.7518 -5.8577 24 1 10.0877 1.7590 -7.1405 25 6 6.0977 1.7173 1.2473 26 6 5.3781 0.3648 1.3007 27 1 5.6181 -0.1384 2.2374 28 6 5.8314 -0.5020 0.1242 29 8 3.9670 0.5789 1.2204 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.7492 3.2383 0.6507 36 1 3.9525 2.9989 -1.1039 37 1 4.1940 4.4074 -1.1137 38 1 3.3613 5.4633 -3.1692 39 1 4.6509 5.3008 -5.2575 40 1 6.7860 4.0872 -5.3070 41 1 11.2368 1.3490 -3.4544 42 1 7.1729 1.5583 1.1654 43 1 5.8780 2.2860 2.1508 44 1 6.9081 -0.6610 0.1836 45 1 5.3191 -1.4633 0.1626 46 1 5.5895 0.0011 -0.8121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188426315.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:32 Heat of formation + Delta-G solvation = -90.719785 kcal Electronic energy + Delta-G solvation = -30355.380040 eV Core-core repulsion = 26212.699650 eV Total energy + Delta-G solvation = -4142.680390 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.51452 -39.17431 -38.00273 -37.37782 -36.50574 -34.37806 -33.04263 -32.38958 -30.67522 -29.80215 -29.04434 -27.32434 -26.43069 -25.42403 -25.18422 -23.04934 -22.61449 -21.46454 -20.21834 -19.14480 -18.13271 -17.36447 -16.84423 -16.67650 -16.38695 -15.75985 -15.64880 -15.22250 -15.02241 -14.86455 -14.59489 -14.31718 -14.04699 -14.00767 -13.70987 -13.63989 -13.03780 -12.90771 -12.63824 -12.46916 -12.38909 -11.95409 -11.80524 -11.70097 -11.65911 -11.33249 -11.25622 -11.17842 -11.05999 -10.92331 -10.78935 -10.52497 -10.24089 -9.90416 -9.76900 -9.63662 -8.99364 -8.91238 -8.29990 -8.15813 -7.37903 -6.49371 -4.09644 1.67810 2.21413 3.09045 3.11403 3.13971 3.15729 3.54170 3.59055 3.74852 3.90040 4.45459 4.80854 4.84641 4.90729 4.96877 5.00465 5.09899 5.11564 5.14354 5.22922 5.25663 5.34153 5.36895 5.40941 5.43921 5.48379 5.49028 5.62987 5.74419 5.84904 5.92819 5.97284 6.01594 6.07252 6.09876 6.41832 6.48208 6.57129 6.79040 6.86477 6.97638 6.98671 7.17993 7.23013 7.24151 7.61315 7.80481 7.91876 8.88456 8.92374 9.60068 10.65155 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013097 B = 0.003748 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.342903 B = 7469.450256 C = 8378.991678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.072 3.928 4 C 0.074 3.926 5 H 0.078 0.922 6 C 0.058 3.942 7 N -0.619 5.619 8 C 0.570 3.430 9 O -0.504 6.504 10 C -0.222 4.222 11 C -0.059 4.059 12 C -0.227 4.227 13 C -0.052 4.052 14 C -0.235 4.235 15 C 0.190 3.810 16 O -0.137 6.137 17 C -0.402 4.402 18 H 0.094 0.906 19 C 0.045 3.955 20 N -0.837 5.837 21 Si 0.941 3.059 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.269 1.269 25 C 0.086 3.914 26 C 0.077 3.923 27 H 0.111 0.889 28 C -0.182 4.182 29 O -0.367 6.367 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.132 0.868 41 H 0.273 0.727 42 H 0.102 0.898 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.637 -0.098 5.577 17.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.005 4.005 4 C 0.015 3.985 5 H 0.096 0.904 6 C -0.065 4.065 7 N -0.356 5.356 8 C 0.361 3.639 9 O -0.377 6.377 10 C -0.226 4.226 11 C -0.078 4.078 12 C -0.246 4.246 13 C -0.071 4.071 14 C -0.254 4.254 15 C 0.131 3.869 16 O -0.036 6.036 17 C -0.478 4.478 18 H 0.111 0.889 19 C -0.162 4.162 20 N -0.469 5.469 21 Si 0.765 3.235 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.194 1.194 25 C -0.037 4.037 26 C 0.019 3.981 27 H 0.128 0.872 28 C -0.239 4.239 29 O -0.286 6.286 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.150 0.850 41 H 0.083 0.917 42 H 0.120 0.880 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.550 -0.625 6.080 16.708 hybrid contribution 0.333 0.387 -1.035 1.154 sum -15.217 -0.238 5.045 16.033 Atomic orbital electron populations 1.22740 0.81213 1.02724 0.99855 1.87955 1.19397 1.27287 1.95371 1.22468 0.91574 0.85434 1.01035 1.22582 0.92525 0.94024 0.89371 0.90426 1.23169 0.81496 0.96703 1.05176 1.47885 1.05489 1.56691 1.25496 1.18225 0.85574 0.77867 0.82271 1.90861 1.14861 1.56894 1.75128 1.18734 0.99214 1.12321 0.92373 1.21117 0.93201 0.95258 0.98178 1.20492 1.02259 1.08342 0.93547 1.20904 0.93513 0.95478 0.97158 1.21159 0.99084 1.06076 0.99059 1.19180 0.87008 0.89003 0.91712 1.84054 1.25127 1.57258 1.37174 1.21400 0.98601 1.39056 0.88721 0.88857 1.25371 0.95970 0.95819 0.99071 1.70083 1.17088 1.31330 1.28399 0.85784 0.78772 0.79029 0.79872 1.19321 1.20128 1.19353 1.22209 1.01329 0.92166 0.87988 1.22584 0.80937 0.94698 0.99922 0.87159 1.22346 1.02411 0.99964 0.99177 1.87996 1.22264 1.81166 1.37171 0.94126 0.94098 0.89704 0.92343 0.91456 0.90924 0.85652 0.85397 0.87083 0.87091 0.85002 0.91738 0.87964 0.91390 0.91082 0.91931 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.71 10.67 -39.97 -0.43 -5.13 16 3 C 0.07 0.78 5.61 37.15 0.21 0.99 16 4 C 0.07 0.98 2.69 -26.36 -0.07 0.91 16 5 H 0.08 1.17 6.25 -51.93 -0.32 0.85 16 6 C 0.06 0.77 4.46 -3.32 -0.01 0.76 16 7 N -0.62 -10.63 2.53 -173.25 -0.44 -11.07 16 8 C 0.57 12.56 7.29 -12.47 -0.09 12.47 16 9 O -0.50 -13.56 15.44 -12.42 -0.19 -13.75 16 10 C -0.22 -4.74 5.53 -104.81 -0.58 -5.32 16 11 C -0.06 -0.98 7.44 -39.20 -0.29 -1.28 16 12 C -0.23 -3.53 10.02 -39.61 -0.40 -3.92 16 13 C -0.05 -0.88 10.03 -39.54 -0.40 -1.28 16 14 C -0.23 -4.90 9.16 -39.44 -0.36 -5.27 16 15 C 0.19 4.62 6.63 -38.60 -0.26 4.36 16 16 O -0.14 -3.98 8.40 -16.89 -0.14 -4.12 16 17 C -0.40 -11.23 9.49 30.90 0.29 -10.94 16 18 H 0.09 2.36 5.21 -52.49 -0.27 2.08 16 19 C 0.05 1.25 5.49 -17.52 -0.10 1.15 16 20 N -0.84 -24.95 13.67 55.48 0.76 -24.19 16 21 Si 0.94 20.35 29.55 -169.99 -5.02 15.33 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 C 0.09 1.33 6.00 -3.53 -0.02 1.31 16 26 C 0.08 1.06 3.93 -26.58 -0.10 0.96 16 27 H 0.11 1.27 8.14 -51.92 -0.42 0.84 16 28 C -0.18 -2.75 8.81 37.16 0.33 -2.42 16 29 O -0.37 -5.26 10.19 -39.97 -0.41 -5.67 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.13 1.66 3.67 -51.98 -0.19 1.47 16 37 H 0.13 1.70 5.40 -52.48 -0.28 1.42 16 38 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 41 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.10 1.78 7.11 -51.93 -0.37 1.41 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.06 1.12 6.11 -51.92 -0.32 0.80 16 LS Contribution 370.59 15.07 5.58 5.58 Total: -1.00 -35.01 370.59 -7.29 -42.30 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -6.26 Total: 6.86 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -0.74 Total: -6.14 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.32 Total: -35.26 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -1.17 Total: -28.68 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.01 -7.29 -42.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188426315.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.419 kcal (2) G-P(sol) polarization free energy of solvation -35.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds