Wall clock time and date at job start Tue Mar 31 2020 19:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99936 * 2 1 4 4 C 1.53004 * 109.47372 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.51043 * 304.90457 * 4 3 2 6 6 C 1.52879 * 109.58401 * 184.88149 * 4 3 2 7 7 N 1.47155 * 108.60353 * 187.92219 * 6 4 3 8 8 C 1.34779 * 120.98112 * 230.50039 * 7 6 4 9 9 O 1.21591 * 120.00235 * 183.72348 * 8 7 6 10 10 C 1.47536 * 119.99658 * 3.72286 * 8 7 6 11 11 C 1.39659 * 120.20048 * 307.72801 * 10 8 7 12 12 C 1.37832 * 119.92083 * 180.02562 * 11 10 8 13 13 C 1.38571 * 120.32150 * 359.97438 * 12 11 10 14 14 C 1.38025 * 120.40431 * 0.02562 * 13 12 11 15 15 C 1.38834 * 120.07204 * 359.97438 * 14 13 12 16 16 O 1.35520 * 120.16232 * 179.97438 * 15 14 13 17 17 C 1.34814 * 117.00293 * 5.92734 * 16 15 14 18 18 H 1.07999 * 119.99194 * 354.86076 * 17 16 15 19 19 C 1.38689 * 120.00211 * 174.85924 * 17 16 15 20 20 N 1.31519 * 119.99989 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00078 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46939 * 60.00154 * 21 19 17 23 23 H 1.48497 * 109.47220 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47086 * 299.99874 * 21 19 17 25 25 C 1.47155 * 118.03632 * 50.23213 * 7 6 4 26 26 C 1.53291 * 108.38287 * 309.70894 * 25 7 6 27 27 H 1.08999 * 109.51654 * 292.38047 * 26 25 7 28 28 C 1.53000 * 109.51383 * 172.27468 * 26 25 7 29 29 O 1.42964 * 109.22047 * 52.30524 * 26 25 7 30 30 H 1.09003 * 109.47183 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47004 * 299.99374 * 1 2 3 32 32 H 1.08997 * 109.47470 * 59.99610 * 1 2 3 33 33 H 1.08998 * 109.47176 * 60.00402 * 3 2 1 34 34 H 1.09002 * 109.47609 * 300.00368 * 3 2 1 35 35 H 1.08999 * 109.61742 * 68.10497 * 6 4 3 36 36 H 1.08998 * 109.52213 * 307.68739 * 6 4 3 37 37 H 1.07995 * 120.04508 * 0.04518 * 11 10 8 38 38 H 1.07993 * 119.84060 * 179.97438 * 12 11 10 39 39 H 1.08004 * 119.80111 * 179.74684 * 13 12 11 40 40 H 1.08001 * 119.96664 * 179.97438 * 14 13 12 41 41 H 0.97008 * 120.00146 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.68300 * 69.43709 * 25 7 6 43 43 H 1.09002 * 109.67991 * 189.98815 * 25 7 6 44 44 H 1.09011 * 109.46560 * 60.00470 * 28 26 25 45 45 H 1.08994 * 109.47321 * 180.02562 * 28 26 25 46 46 H 1.09001 * 109.47242 * 300.00917 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8523 0.5698 0.8417 6 6 4.1596 2.5749 0.1219 7 7 5.6134 2.4555 -0.0720 8 6 6.4777 2.9994 0.8077 9 8 7.6738 2.9490 0.5953 10 6 5.9722 3.6560 2.0284 11 6 4.9908 4.6456 1.9388 12 6 4.5231 5.2556 3.0829 13 6 5.0216 4.8917 4.3236 14 6 5.9917 3.9153 4.4276 15 6 6.4746 3.2901 3.2860 16 8 7.4274 2.3316 3.3859 17 6 7.7771 1.9433 4.6287 18 1 7.3644 2.4498 5.4887 19 6 8.6666 0.8936 4.8028 20 7 9.1695 0.2773 3.7554 21 14 9.1505 0.3552 6.5248 22 1 7.9388 -0.0744 7.2679 23 1 10.1067 -0.7776 6.4389 24 1 9.7913 1.4902 7.2365 25 6 6.0958 1.7197 -1.2515 26 6 5.3774 0.3666 -1.3043 27 1 5.7017 -0.2508 -0.4666 28 6 5.7130 -0.3393 -2.6195 29 8 3.9661 0.5795 -1.2222 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.6887 1.8463 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.9535 2.9826 1.1115 36 1 3.7401 3.2310 -0.6407 37 1 4.5985 4.9323 0.9744 38 1 3.7645 6.0210 3.0121 39 1 4.6520 5.3781 5.2143 40 1 6.3755 3.6375 5.3981 41 1 9.7914 -0.4572 3.8772 42 1 5.8747 2.2883 -2.1547 43 1 7.1713 1.5614 -1.1709 44 1 6.7898 -0.4974 -2.6825 45 1 5.2015 -1.3011 -2.6566 46 1 5.3869 0.2778 -3.4567 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188426367.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:37 Heat of formation + Delta-G solvation = -137.377048 kcal Electronic energy + Delta-G solvation = -30141.674783 eV Core-core repulsion = 25996.971182 eV Total energy + Delta-G solvation = -4144.703601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.81176 -40.64866 -39.46501 -38.49386 -38.11028 -35.87006 -34.51199 -34.37383 -32.20840 -30.98647 -30.62640 -28.21390 -27.73685 -27.25545 -26.11719 -24.29160 -23.37521 -22.93845 -22.20205 -20.76244 -19.93776 -18.99826 -18.15048 -18.05414 -17.61631 -17.04970 -16.74960 -16.57771 -16.43294 -16.33587 -16.04854 -15.82820 -15.52367 -15.43464 -15.26929 -14.71978 -14.49566 -14.37364 -14.07000 -13.80347 -13.59145 -13.34470 -13.27867 -13.02652 -12.88326 -12.73971 -12.60362 -12.48120 -12.40602 -12.39879 -12.18664 -12.02009 -11.76625 -11.50002 -11.24274 -10.86061 -10.78195 -10.61468 -9.84775 -9.63012 -9.08850 -8.50737 -6.21541 0.19910 0.67150 1.30457 1.42961 1.48242 1.58315 1.93253 2.13046 2.47118 2.75734 2.78083 3.11323 3.36914 3.54271 3.63426 3.85365 3.89177 3.98880 4.02472 4.09256 4.18265 4.24952 4.28363 4.40181 4.44898 4.49122 4.52149 4.58137 4.60410 4.62080 4.65804 4.77879 4.86038 4.90164 4.91622 4.95113 5.04403 5.09218 5.17542 5.37325 5.48082 5.56344 5.67616 5.91471 6.03026 6.13358 6.21897 6.28627 6.90649 7.13656 7.72009 8.70998 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009734 B = 0.004033 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2875.907120 B = 6941.178683 C = 7536.144230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.079 3.921 4 C 0.075 3.925 5 H 0.035 0.965 6 C 0.080 3.920 7 N -0.615 5.615 8 C 0.570 3.430 9 O -0.579 6.579 10 C -0.234 4.234 11 C -0.038 4.038 12 C -0.188 4.188 13 C -0.044 4.044 14 C -0.249 4.249 15 C 0.146 3.854 16 O -0.214 6.214 17 C -0.422 4.422 18 H 0.109 0.891 19 C -0.023 4.023 20 N -0.915 5.915 21 Si 1.022 2.978 22 H -0.252 1.252 23 H -0.274 1.274 24 H -0.254 1.254 25 C 0.085 3.915 26 C 0.076 3.924 27 H 0.029 0.971 28 C -0.131 4.131 29 O -0.368 6.368 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.156 0.844 38 H 0.169 0.831 39 H 0.156 0.844 40 H 0.124 0.876 41 H 0.272 0.728 42 H 0.102 0.898 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.342 5.514 -7.205 21.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C 0.002 3.998 4 C 0.016 3.984 5 H 0.053 0.947 6 C -0.042 4.042 7 N -0.348 5.348 8 C 0.361 3.639 9 O -0.458 6.458 10 C -0.239 4.239 11 C -0.057 4.057 12 C -0.206 4.206 13 C -0.062 4.062 14 C -0.268 4.268 15 C 0.092 3.908 16 O -0.119 6.119 17 C -0.498 4.498 18 H 0.126 0.874 19 C -0.221 4.221 20 N -0.551 5.551 21 Si 0.840 3.160 22 H -0.176 1.176 23 H -0.199 1.199 24 H -0.179 1.179 25 C -0.037 4.037 26 C 0.018 3.982 27 H 0.047 0.953 28 C -0.189 4.189 29 O -0.287 6.287 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.174 0.826 38 H 0.186 0.814 39 H 0.174 0.826 40 H 0.142 0.858 41 H 0.081 0.919 42 H 0.120 0.880 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.439 4.969 -7.702 20.591 hybrid contribution 1.120 -0.536 1.039 1.619 sum -17.318 4.434 -6.663 19.078 Atomic orbital electron populations 1.22939 0.79020 1.03730 1.01271 1.87912 1.21856 1.28259 1.95695 1.22485 0.88644 0.85449 1.03234 1.22454 0.95302 0.93366 0.87258 0.94695 1.22602 0.78484 0.97340 1.05750 1.48061 1.07165 1.54846 1.24759 1.18611 0.85125 0.77455 0.82692 1.90742 1.17942 1.60486 1.76670 1.19069 1.07103 1.07884 0.89809 1.21232 0.91698 0.91924 1.00820 1.21188 1.04564 1.03982 0.90848 1.21437 0.92287 0.92804 0.99628 1.21299 1.04640 1.03391 0.97456 1.19920 0.87527 0.89087 0.94233 1.84006 1.47603 1.48445 1.31807 1.21933 1.28224 1.17412 0.82199 0.87383 1.26739 0.95594 0.95060 1.04706 1.70253 1.29888 1.22311 1.32695 0.84617 0.78935 0.78426 0.74004 1.17602 1.19865 1.17858 1.22379 0.99853 0.93203 0.88292 1.22464 0.81351 0.94386 1.00029 0.95318 1.21679 1.02453 1.00865 0.93888 1.87948 1.21865 1.81426 1.37456 0.89123 0.92698 0.92524 0.89162 0.89902 0.87172 0.86712 0.82641 0.81396 0.82591 0.85781 0.91935 0.87968 0.90988 0.90112 0.91009 0.89741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.42 -10.26 10.67 -144.46 -1.54 -11.80 16 3 C 0.08 1.60 5.60 71.98 0.40 2.00 16 4 C 0.08 2.10 3.05 30.56 0.09 2.20 16 5 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 6 C 0.08 2.11 4.84 86.21 0.42 2.53 16 7 N -0.61 -22.40 3.03 -821.90 -2.49 -24.89 16 8 C 0.57 26.82 6.91 86.70 0.60 27.41 16 9 O -0.58 -33.67 16.17 1.16 0.02 -33.65 16 10 C -0.23 -10.17 4.94 -19.99 -0.10 -10.27 16 11 C -0.04 -1.15 7.44 22.52 0.17 -0.98 16 12 C -0.19 -4.70 10.03 22.25 0.22 -4.47 16 13 C -0.04 -1.28 10.03 22.30 0.22 -1.06 16 14 C -0.25 -10.33 9.16 22.36 0.20 -10.12 16 15 C 0.15 7.41 6.64 22.91 0.15 7.57 16 16 O -0.21 -13.56 8.90 -14.90 -0.13 -13.69 16 17 C -0.42 -25.29 9.49 67.93 0.64 -24.65 16 18 H 0.11 5.77 5.21 -2.91 -0.02 5.76 16 19 C -0.02 -1.33 5.49 84.85 0.47 -0.87 16 20 N -0.91 -59.40 13.67 21.62 0.30 -59.11 16 21 Si 1.02 43.96 29.55 68.60 2.03 45.99 16 22 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 24 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 25 C 0.09 2.83 5.92 86.35 0.51 3.34 16 26 C 0.08 2.37 3.40 30.69 0.10 2.48 16 27 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 28 C -0.13 -3.03 9.57 71.98 0.69 -2.34 16 29 O -0.37 -10.96 10.00 -144.46 -1.44 -12.40 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.11 2.83 4.89 -2.39 -0.01 2.82 16 36 H 0.11 2.12 8.13 -2.39 -0.02 2.11 16 37 H 0.16 3.42 7.24 -2.91 -0.02 3.39 16 38 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 39 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 40 H 0.12 5.23 5.64 -2.91 -0.02 5.22 16 41 H 0.27 16.22 8.31 -92.70 -0.77 15.45 16 42 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 43 H 0.07 2.83 7.11 -2.39 -0.02 2.81 16 44 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 45 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -90.01 379.02 3.77 -86.24 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: 0.99 Total: 28.91 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 6.05 Total: -5.60 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -2.19 Total: -83.99 kcal Atomic # 8 Polarization: -68.44 SS G_CDS: -3.10 Total: -71.54 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -90.01 3.77 -86.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188426367.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.139 kcal (2) G-P(sol) polarization free energy of solvation -90.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds