Wall clock time and date at job start Tue Mar 31 2020 19:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35719 * 116.99972 * 2 1 4 4 C 1.39193 * 119.86056 * 359.97438 * 3 2 1 5 5 C 1.37538 * 120.23743 * 179.75868 * 4 3 2 6 6 C 1.39860 * 119.96688 * 0.53607 * 5 4 3 7 7 C 1.47293 * 120.13590 * 179.73948 * 6 5 4 8 8 O 1.21622 * 119.99944 * 173.01956 * 7 6 5 9 9 N 1.34776 * 120.00106 * 353.02932 * 7 6 5 10 10 C 1.47577 * 134.49251 * 174.24746 * 9 7 6 11 11 C 1.53945 * 86.11976 * 155.35188 * 10 9 7 12 12 O 1.42899 * 113.74169 * 269.15483 * 11 10 9 13 13 C 1.50702 * 113.74262 * 137.94797 * 11 10 9 14 14 H 1.08005 * 119.99734 * 1.93060 * 13 11 10 15 15 C 1.37871 * 120.00036 * 181.92668 * 13 11 10 16 16 N 1.31514 * 119.99906 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 120.00149 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47202 * 179.97438 * 17 15 13 19 19 H 1.48496 * 109.46977 * 299.99987 * 17 15 13 20 20 H 1.48497 * 109.47003 * 59.99938 * 17 15 13 21 21 C 1.47812 * 134.45790 * 354.10655 * 9 7 6 22 22 C 1.40295 * 119.72838 * 359.46476 * 6 5 4 23 23 O 1.35652 * 120.12535 * 180.27456 * 22 6 5 24 24 C 1.42890 * 117.00615 * 185.81459 * 23 22 6 25 25 C 1.52999 * 109.47678 * 146.93174 * 24 23 22 26 26 C 1.53005 * 109.47286 * 266.93573 * 24 23 22 27 27 C 1.38451 * 119.76100 * 0.25559 * 22 6 5 28 28 H 1.08998 * 109.46724 * 299.99142 * 1 2 3 29 29 H 1.08991 * 109.47329 * 59.99948 * 1 2 3 30 30 H 1.09002 * 109.46482 * 180.02562 * 1 2 3 31 31 H 1.07995 * 119.87943 * 0.03990 * 4 3 2 32 32 H 1.07998 * 120.01901 * 180.27234 * 5 4 3 33 33 H 1.09004 * 113.77209 * 41.04802 * 10 9 7 34 34 H 1.09000 * 113.76731 * 269.65812 * 10 9 7 35 35 H 0.96697 * 114.00118 * 178.07401 * 12 11 10 36 36 H 0.97008 * 120.00104 * 180.02562 * 16 15 13 37 37 H 1.08999 * 113.76529 * 90.38176 * 21 9 7 38 38 H 1.09003 * 113.83280 * 318.91849 * 21 9 7 39 39 H 1.09003 * 109.47594 * 26.93066 * 24 23 22 40 40 H 1.09008 * 109.46916 * 59.99742 * 25 24 23 41 41 H 1.08995 * 109.47833 * 179.97438 * 25 24 23 42 42 H 1.09000 * 109.46864 * 300.00187 * 25 24 23 43 43 H 1.08999 * 109.47644 * 59.99297 * 26 24 23 44 44 H 1.08995 * 109.47381 * 180.02562 * 26 24 23 45 45 H 1.09008 * 109.46607 * 299.99828 * 26 24 23 46 46 H 1.07996 * 119.98741 * 179.97438 * 27 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2842 2.3748 -0.0005 5 6 1.9005 3.6043 0.0045 6 6 3.2967 3.6860 -0.0012 7 6 3.9606 5.0008 -0.0017 8 8 5.1685 5.0722 0.1214 9 7 3.2296 6.1248 -0.1383 10 6 3.5308 7.5682 -0.0774 11 6 2.2881 7.7585 -0.9659 12 8 2.5732 7.7379 -2.3660 13 6 1.4242 8.9245 -0.5593 14 1 1.7199 9.5531 0.2677 15 6 0.2565 9.1888 -1.2430 16 7 -0.1037 8.4231 -2.2498 17 14 -0.8139 10.6345 -0.7395 18 1 -2.0033 10.7023 -1.6261 19 1 -1.2542 10.4579 0.6676 20 1 -0.0348 11.8929 -0.8601 21 6 1.8045 6.4060 -0.4119 22 6 4.0624 2.5103 -0.0006 23 8 5.4171 2.5801 -0.0005 24 6 6.1302 1.3486 -0.1289 25 6 7.4283 1.5890 -0.9023 26 6 6.4590 0.8022 1.2620 27 6 3.4303 1.2785 0.0002 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 0.2060 2.3134 -0.0003 32 1 1.3067 4.5064 0.0085 33 1 4.4660 7.8429 -0.5654 34 1 3.4279 7.9968 0.9195 35 1 1.7914 7.8277 -2.9280 36 1 -0.9251 8.6093 -2.7311 37 1 1.1934 6.4924 0.4866 38 1 1.3639 5.7544 -1.1665 39 1 5.5153 0.6269 -0.6666 40 1 8.0433 2.3107 -0.3645 41 1 7.9725 0.6497 -0.9998 42 1 7.1941 1.9782 -1.8931 43 1 5.5343 0.6309 1.8130 44 1 7.0034 -0.1370 1.1640 45 1 7.0740 1.5239 1.7998 46 1 4.0161 0.3713 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193981689.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:30 Heat of formation + Delta-G solvation = -86.859545 kcal Electronic energy + Delta-G solvation = -29706.817476 eV Core-core repulsion = 25564.304478 eV Total energy + Delta-G solvation = -4142.512998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.73206 -39.36611 -39.14319 -37.20134 -36.29943 -33.91647 -33.11804 -32.20515 -31.11216 -29.67040 -28.32716 -27.48610 -27.24912 -25.44181 -25.27504 -23.51244 -22.50456 -20.87349 -20.07322 -19.17448 -18.23714 -17.45002 -16.84844 -16.51291 -16.39526 -15.96244 -15.37831 -15.30347 -15.00330 -14.80717 -14.46498 -14.34747 -14.14262 -13.52291 -13.25438 -13.23578 -12.88343 -12.69585 -12.60605 -12.36952 -12.27765 -12.16711 -12.06695 -11.95653 -11.84789 -11.54845 -11.21343 -11.20506 -11.04631 -10.94086 -10.69902 -10.52532 -10.47978 -10.26356 -9.53113 -9.09561 -8.74454 -8.60060 -8.32685 -8.06226 -7.66990 -6.37750 -4.48074 1.11259 1.43116 2.99152 3.16757 3.22607 3.24976 3.26141 3.30049 3.64411 4.15039 4.20600 4.64213 4.70347 4.83681 4.85249 4.87808 4.97982 4.98788 5.00648 5.06160 5.23541 5.27650 5.41738 5.43665 5.49262 5.61952 5.63410 5.69682 5.76606 5.93328 5.99177 6.03275 6.10634 6.23946 6.29206 6.37590 6.44587 6.51196 6.54584 6.67389 6.79639 7.12825 7.17732 7.53170 7.64117 7.84632 8.54948 8.59142 8.96211 9.23141 9.46029 10.68640 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013152 B = 0.003441 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.392840 B = 8135.982454 C = 9774.937440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.184 3.816 4 C -0.255 4.255 5 C -0.016 4.016 6 C -0.194 4.194 7 C 0.577 3.423 8 O -0.544 6.544 9 N -0.632 5.632 10 C 0.115 3.885 11 C 0.240 3.760 12 O -0.571 6.571 13 C -0.537 4.537 14 H 0.071 0.929 15 C 0.073 3.927 16 N -0.898 5.898 17 Si 0.907 3.093 18 H -0.285 1.285 19 H -0.274 1.274 20 H -0.273 1.273 21 C 0.071 3.929 22 C 0.222 3.778 23 O -0.266 6.266 24 C 0.065 3.935 25 C -0.148 4.148 26 C -0.174 4.174 27 C -0.264 4.264 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.099 0.901 31 H 0.134 0.866 32 H 0.154 0.846 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.391 0.609 36 H 0.273 0.727 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.701 -16.880 4.107 17.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.138 3.862 4 C -0.274 4.274 5 C -0.035 4.035 6 C -0.198 4.198 7 C 0.367 3.633 8 O -0.424 6.424 9 N -0.367 5.367 10 C -0.007 4.007 11 C 0.198 3.802 12 O -0.382 6.382 13 C -0.575 4.575 14 H 0.089 0.911 15 C -0.130 4.130 16 N -0.538 5.538 17 Si 0.734 3.266 18 H -0.211 1.211 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.052 4.052 22 C 0.173 3.827 23 O -0.177 6.177 24 C 0.008 3.992 25 C -0.206 4.206 26 C -0.231 4.231 27 C -0.284 4.284 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.117 0.883 31 H 0.151 0.849 32 H 0.171 0.829 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.245 0.755 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.150 -17.139 4.272 17.941 hybrid contribution -1.732 0.512 0.060 1.807 sum 1.418 -16.626 4.332 17.240 Atomic orbital electron populations 1.23111 0.77962 1.03899 1.01957 1.85994 1.21792 1.27114 1.88006 1.18852 0.91452 0.84102 0.91824 1.21083 1.00273 0.91809 1.14248 1.21719 0.92951 0.98697 0.90084 1.19370 0.92916 0.92041 1.15457 1.17464 0.86149 0.82586 0.77074 1.90751 1.13351 1.86743 1.51567 1.50020 1.11788 1.05477 1.69365 1.23405 1.00378 0.77465 0.99460 1.19841 0.89311 0.90448 0.80568 1.86080 1.39285 1.95960 1.16917 1.21488 1.05760 1.13350 1.16941 0.91097 1.25057 0.97209 0.96430 0.94290 1.69402 1.25058 1.38493 1.20868 0.86410 0.79344 0.82296 0.78587 1.21058 1.19924 1.19873 1.24410 0.81548 0.99721 0.99531 1.18641 0.83116 0.91627 0.89313 1.86490 1.13883 1.31857 1.85440 1.22603 0.93834 0.85648 0.97071 1.21857 0.95467 1.02518 1.00721 1.22295 1.02695 1.01447 0.96674 1.20253 0.92491 0.97430 1.18179 0.92290 0.92176 0.88251 0.84867 0.82877 0.91120 0.89704 0.75481 0.91684 0.89935 0.90906 0.90649 0.91189 0.90861 0.91613 0.92010 0.91154 0.91229 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.80 101.05 0.99 1.20 16 2 O -0.32 -3.77 10.48 -18.86 -0.20 -3.97 16 3 C 0.18 2.54 6.69 -39.06 -0.26 2.28 16 4 C -0.26 -3.55 9.01 -39.48 -0.36 -3.91 16 5 C -0.02 -0.27 9.06 -39.23 -0.36 -0.62 16 6 C -0.19 -3.70 5.89 -104.84 -0.62 -4.31 16 7 C 0.58 12.92 7.96 -12.58 -0.10 12.82 16 8 O -0.54 -13.57 15.91 -16.56 -0.26 -13.83 16 9 N -0.63 -13.96 3.60 -179.42 -0.65 -14.60 16 10 C 0.11 2.57 8.23 -2.97 -0.02 2.54 16 11 C 0.24 5.75 1.40 -90.84 -0.13 5.63 16 12 O -0.57 -14.79 13.48 -35.23 -0.48 -15.27 16 13 C -0.54 -13.34 8.61 -34.44 -0.30 -13.63 16 14 H 0.07 1.71 7.81 -52.48 -0.41 1.30 16 15 C 0.07 1.78 5.39 -17.82 -0.10 1.69 16 16 N -0.90 -22.35 11.20 55.43 0.62 -21.72 16 17 Si 0.91 19.21 29.54 -169.99 -5.02 14.19 16 18 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 21 C 0.07 1.50 5.59 -2.84 -0.02 1.49 16 22 C 0.22 3.83 6.68 -38.73 -0.26 3.57 16 23 O -0.27 -4.62 7.86 -40.48 -0.32 -4.94 16 24 C 0.06 0.80 2.81 -26.73 -0.08 0.72 16 25 C -0.15 -1.62 9.56 37.16 0.36 -1.26 16 26 C -0.17 -1.80 9.43 37.16 0.35 -1.45 16 27 C -0.26 -3.81 8.66 -39.34 -0.34 -4.15 16 28 H 0.06 0.43 7.65 -51.93 -0.40 0.03 16 29 H 0.06 0.45 7.65 -51.93 -0.40 0.06 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.13 1.49 6.27 -52.49 -0.33 1.16 16 32 H 0.15 2.53 4.09 -52.49 -0.21 2.32 16 33 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 34 H 0.08 1.73 8.09 -51.93 -0.42 1.31 16 35 H 0.39 10.12 6.60 45.56 0.30 10.42 16 36 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 37 H 0.08 1.65 7.99 -51.93 -0.41 1.24 16 38 H 0.07 1.54 6.92 -51.93 -0.36 1.18 16 39 H 0.08 0.83 5.81 -51.93 -0.30 0.53 16 40 H 0.07 0.82 8.14 -51.92 -0.42 0.39 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.66 7.87 -51.93 -0.41 0.25 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 46 H 0.14 1.72 5.78 -52.49 -0.30 1.41 16 LS Contribution 376.00 15.07 5.67 5.67 Total: -1.00 -30.65 376.00 -7.61 -38.26 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -5.75 Total: 13.63 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -1.23 Total: 2.58 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: -0.02 Total: -36.33 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -1.25 Total: -38.00 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.65 -7.61 -38.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193981689.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.601 kcal (2) G-P(sol) polarization free energy of solvation -30.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds