Wall clock time and date at job start Tue Mar 31 2020 19:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35719 * 116.99972 * 2 1 4 4 C 1.39193 * 119.86056 * 359.97438 * 3 2 1 5 5 C 1.37538 * 120.23743 * 179.75868 * 4 3 2 6 6 C 1.39860 * 119.96688 * 0.53607 * 5 4 3 7 7 C 1.47293 * 120.13590 * 179.73948 * 6 5 4 8 8 O 1.21622 * 119.99944 * 173.01956 * 7 6 5 9 9 N 1.34776 * 120.00106 * 353.02932 * 7 6 5 10 10 C 1.47577 * 134.49251 * 174.24746 * 9 7 6 11 11 C 1.53945 * 86.11976 * 155.35188 * 10 9 7 12 12 O 1.42899 * 113.74169 * 269.15483 * 11 10 9 13 13 C 1.50702 * 113.74262 * 137.94797 * 11 10 9 14 14 H 1.08005 * 119.99734 * 1.93060 * 13 11 10 15 15 C 1.37871 * 120.00036 * 181.92668 * 13 11 10 16 16 N 1.31514 * 119.99906 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 120.00149 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47202 * 179.97438 * 17 15 13 19 19 H 1.48496 * 109.46977 * 299.99987 * 17 15 13 20 20 H 1.48497 * 109.47003 * 59.99938 * 17 15 13 21 21 C 1.47812 * 134.45790 * 354.10655 * 9 7 6 22 22 C 1.40295 * 119.72838 * 359.46476 * 6 5 4 23 23 O 1.35652 * 120.12535 * 180.27456 * 22 6 5 24 24 C 1.42890 * 117.00615 * 185.81459 * 23 22 6 25 25 C 1.52999 * 109.47678 * 146.93174 * 24 23 22 26 26 C 1.53005 * 109.47286 * 266.93573 * 24 23 22 27 27 C 1.38451 * 119.76100 * 0.25559 * 22 6 5 28 28 H 1.08998 * 109.46724 * 299.99142 * 1 2 3 29 29 H 1.08991 * 109.47329 * 59.99948 * 1 2 3 30 30 H 1.09002 * 109.46482 * 180.02562 * 1 2 3 31 31 H 1.07995 * 119.87943 * 0.03990 * 4 3 2 32 32 H 1.07998 * 120.01901 * 180.27234 * 5 4 3 33 33 H 1.09004 * 113.77209 * 41.04802 * 10 9 7 34 34 H 1.09000 * 113.76731 * 269.65812 * 10 9 7 35 35 H 0.96697 * 114.00118 * 178.07401 * 12 11 10 36 36 H 0.97008 * 120.00104 * 180.02562 * 16 15 13 37 37 H 1.08999 * 113.76529 * 90.38176 * 21 9 7 38 38 H 1.09003 * 113.83280 * 318.91849 * 21 9 7 39 39 H 1.09003 * 109.47594 * 26.93066 * 24 23 22 40 40 H 1.09008 * 109.46916 * 59.99742 * 25 24 23 41 41 H 1.08995 * 109.47833 * 179.97438 * 25 24 23 42 42 H 1.09000 * 109.46864 * 300.00187 * 25 24 23 43 43 H 1.08999 * 109.47644 * 59.99297 * 26 24 23 44 44 H 1.08995 * 109.47381 * 180.02562 * 26 24 23 45 45 H 1.09008 * 109.46607 * 299.99828 * 26 24 23 46 46 H 1.07996 * 119.98741 * 179.97438 * 27 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2842 2.3748 -0.0005 5 6 1.9005 3.6043 0.0045 6 6 3.2967 3.6860 -0.0012 7 6 3.9606 5.0008 -0.0017 8 8 5.1685 5.0722 0.1214 9 7 3.2296 6.1248 -0.1383 10 6 3.5308 7.5682 -0.0774 11 6 2.2881 7.7585 -0.9659 12 8 2.5732 7.7379 -2.3660 13 6 1.4242 8.9245 -0.5593 14 1 1.7199 9.5531 0.2677 15 6 0.2565 9.1888 -1.2430 16 7 -0.1037 8.4231 -2.2498 17 14 -0.8139 10.6345 -0.7395 18 1 -2.0033 10.7023 -1.6261 19 1 -1.2542 10.4579 0.6676 20 1 -0.0348 11.8929 -0.8601 21 6 1.8045 6.4060 -0.4119 22 6 4.0624 2.5103 -0.0006 23 8 5.4171 2.5801 -0.0005 24 6 6.1302 1.3486 -0.1289 25 6 7.4283 1.5890 -0.9023 26 6 6.4590 0.8022 1.2620 27 6 3.4303 1.2785 0.0002 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 0.2060 2.3134 -0.0003 32 1 1.3067 4.5064 0.0085 33 1 4.4660 7.8429 -0.5654 34 1 3.4279 7.9968 0.9195 35 1 1.7914 7.8277 -2.9280 36 1 -0.9251 8.6093 -2.7311 37 1 1.1934 6.4924 0.4866 38 1 1.3639 5.7544 -1.1665 39 1 5.5153 0.6269 -0.6666 40 1 8.0433 2.3107 -0.3645 41 1 7.9725 0.6497 -0.9998 42 1 7.1941 1.9782 -1.8931 43 1 5.5343 0.6309 1.8130 44 1 7.0034 -0.1370 1.1640 45 1 7.0740 1.5239 1.7998 46 1 4.0161 0.3713 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193981689.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:29 Heat of formation + Delta-G solvation = -106.930497 kcal Electronic energy + Delta-G solvation = -29707.687817 eV Core-core repulsion = 25564.304478 eV Total energy + Delta-G solvation = -4143.383339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.96647 -40.91857 -40.24553 -38.86569 -37.54999 -35.80312 -34.13783 -34.10426 -32.34554 -30.97219 -29.87144 -28.37655 -28.12079 -27.18453 -26.99762 -24.67874 -23.76590 -21.98254 -21.64755 -20.61120 -19.57592 -19.24339 -18.27521 -17.74230 -17.59986 -17.11514 -16.88963 -16.64184 -16.41765 -16.09910 -15.94155 -15.75856 -15.53634 -14.95322 -14.69013 -14.37278 -14.17841 -14.14589 -13.84159 -13.65056 -13.56665 -13.40059 -13.27683 -13.17111 -13.00995 -12.83199 -12.76485 -12.73989 -12.24534 -12.20460 -12.13480 -12.05072 -11.71021 -11.53844 -11.32855 -10.89553 -10.61292 -10.17715 -9.73061 -9.59173 -9.14518 -8.23942 -6.41205 -0.15344 0.26134 1.49737 1.52165 1.59079 1.85503 1.95715 2.02954 2.28861 2.42810 2.74536 2.98403 3.47160 3.60923 3.74858 3.82653 3.92926 3.96138 4.01115 4.12386 4.15497 4.30705 4.37781 4.42125 4.44600 4.49231 4.60456 4.65923 4.67450 4.76658 4.78365 4.81088 4.81587 4.83923 4.87880 5.07390 5.12325 5.19673 5.22071 5.24278 5.28155 5.40421 5.74260 5.95074 6.20900 6.41950 6.63945 6.86861 7.24238 7.32638 7.46308 8.81888 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013152 B = 0.003441 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.392840 B = 8135.982454 C = 9774.937440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.318 6.318 3 C 0.197 3.803 4 C -0.249 4.249 5 C -0.019 4.019 6 C -0.233 4.233 7 C 0.569 3.431 8 O -0.583 6.583 9 N -0.636 5.636 10 C 0.112 3.888 11 C 0.222 3.778 12 O -0.587 6.587 13 C -0.558 4.558 14 H 0.072 0.928 15 C 0.036 3.964 16 N -0.914 5.914 17 Si 0.968 3.032 18 H -0.282 1.282 19 H -0.267 1.267 20 H -0.277 1.277 21 C 0.090 3.910 22 C 0.215 3.785 23 O -0.299 6.299 24 C 0.052 3.948 25 C -0.147 4.147 26 C -0.168 4.168 27 C -0.262 4.262 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.127 0.873 31 H 0.164 0.836 32 H 0.149 0.851 33 H 0.055 0.945 34 H 0.104 0.896 35 H 0.387 0.613 36 H 0.276 0.724 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.109 0.891 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.103 0.897 45 H 0.055 0.945 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.084 -19.166 4.744 19.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.231 6.231 3 C 0.150 3.850 4 C -0.267 4.267 5 C -0.037 4.037 6 C -0.237 4.237 7 C 0.362 3.638 8 O -0.466 6.466 9 N -0.369 5.369 10 C -0.010 4.010 11 C 0.181 3.819 12 O -0.399 6.399 13 C -0.595 4.595 14 H 0.090 0.910 15 C -0.165 4.165 16 N -0.554 5.554 17 Si 0.793 3.207 18 H -0.207 1.207 19 H -0.191 1.191 20 H -0.203 1.203 21 C -0.033 4.033 22 C 0.166 3.834 23 O -0.211 6.211 24 C -0.003 4.003 25 C -0.204 4.204 26 C -0.225 4.225 27 C -0.281 4.281 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.145 0.855 31 H 0.182 0.818 32 H 0.166 0.834 33 H 0.073 0.927 34 H 0.122 0.878 35 H 0.241 0.759 36 H 0.086 0.914 37 H 0.115 0.885 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.073 0.927 41 H 0.128 0.872 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.121 0.879 45 H 0.074 0.926 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.348 -19.445 4.914 20.101 hybrid contribution -1.193 1.090 -0.170 1.625 sum 0.155 -18.355 4.744 18.958 Atomic orbital electron populations 1.23503 0.75622 1.06176 1.02840 1.86016 1.24113 1.25755 1.87183 1.18937 0.91385 0.84879 0.89845 1.21340 1.01803 0.90715 1.12849 1.21664 0.91866 0.99747 0.90459 1.19283 0.94180 0.90827 1.19422 1.18097 0.85912 0.83732 0.76081 1.90703 1.14939 1.87426 1.53500 1.50063 1.12070 1.05323 1.69481 1.23448 0.99170 0.78322 1.00045 1.20114 0.90268 0.91854 0.79713 1.86068 1.39448 1.96163 1.18185 1.21681 1.06374 1.14014 1.17479 0.90991 1.25715 0.98092 0.98499 0.94200 1.69466 1.25345 1.39387 1.21234 0.85455 0.77629 0.79093 0.78521 1.20734 1.19132 1.20276 1.24234 0.81306 0.97894 0.99821 1.18762 0.83316 0.92020 0.89351 1.86459 1.14289 1.34907 1.85470 1.23003 0.94042 0.84542 0.98680 1.21903 0.95053 1.03950 0.99447 1.22267 1.02660 1.02417 0.95128 1.20412 0.93183 0.97047 1.17478 0.91190 0.91441 0.85470 0.81816 0.83369 0.92653 0.87842 0.75874 0.91428 0.88454 0.90921 0.89016 0.92679 0.87216 0.92977 0.92363 0.87882 0.92602 0.81911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.80 113.37 1.11 1.26 16 2 O -0.32 -6.43 10.48 -90.41 -0.95 -7.38 16 3 C 0.20 4.93 6.69 22.61 0.15 5.08 16 4 C -0.25 -6.36 9.01 22.33 0.20 -6.16 16 5 C -0.02 -0.62 9.06 22.50 0.20 -0.42 16 6 C -0.23 -9.08 5.89 -20.00 -0.12 -9.20 16 7 C 0.57 26.57 7.96 86.62 0.69 27.26 16 8 O -0.58 -30.65 15.91 16.76 0.27 -30.38 16 9 N -0.64 -28.98 3.60 -843.64 -3.03 -32.01 16 10 C 0.11 5.19 8.23 86.49 0.71 5.90 16 11 C 0.22 10.84 1.40 -10.88 -0.02 10.82 16 12 O -0.59 -31.36 13.48 -148.98 -2.01 -33.37 16 13 C -0.56 -27.77 8.61 25.60 0.22 -27.55 16 14 H 0.07 3.48 7.81 -2.91 -0.02 3.46 16 15 C 0.04 1.74 5.39 84.65 0.46 2.20 16 16 N -0.91 -45.30 11.20 21.45 0.24 -45.06 16 17 Si 0.97 38.83 29.54 68.60 2.03 40.86 16 18 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 19 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 20 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 21 C 0.09 3.87 5.59 86.44 0.48 4.35 16 22 C 0.21 7.45 6.68 22.82 0.15 7.60 16 23 O -0.30 -10.68 7.86 -68.81 -0.54 -11.22 16 24 C 0.05 1.26 2.81 30.60 0.09 1.34 16 25 C -0.15 -3.13 9.56 71.98 0.69 -2.44 16 26 C -0.17 -3.24 9.43 71.98 0.68 -2.57 16 27 C -0.26 -7.13 8.66 22.43 0.19 -6.94 16 28 H 0.07 0.72 7.65 -2.39 -0.02 0.70 16 29 H 0.07 0.75 7.65 -2.39 -0.02 0.73 16 30 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.16 3.09 6.27 -2.91 -0.02 3.07 16 32 H 0.15 4.86 4.09 -2.91 -0.01 4.85 16 33 H 0.05 2.67 8.14 -2.38 -0.02 2.65 16 34 H 0.10 4.30 8.09 -2.39 -0.02 4.28 16 35 H 0.39 20.62 6.60 -74.06 -0.49 20.13 16 36 H 0.28 12.96 8.31 -92.70 -0.77 12.19 16 37 H 0.10 3.87 7.99 -2.39 -0.02 3.85 16 38 H 0.07 3.11 6.92 -2.39 -0.02 3.10 16 39 H 0.09 1.85 5.81 -2.39 -0.01 1.83 16 40 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.06 1.16 7.87 -2.39 -0.02 1.14 16 44 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 46 H 0.16 3.56 5.78 -2.91 -0.02 3.54 16 Total: -1.00 -68.15 376.00 2.43 -65.72 By element: Atomic # 1 Polarization: 41.75 SS G_CDS: 0.53 Total: 42.28 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 5.90 Total: 10.56 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -2.79 Total: -77.07 kcal Atomic # 8 Polarization: -79.12 SS G_CDS: -3.23 Total: -82.35 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -68.15 2.43 -65.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193981689.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.212 kcal (2) G-P(sol) polarization free energy of solvation -68.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds