Wall clock time and date at job start Tue Mar 31 2020 18:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 N 1.46496 * 109.47573 * 180.02562 * 3 2 1 5 5 C 1.37097 * 120.00100 * 264.77322 * 4 3 2 6 6 H 1.08003 * 120.00206 * 138.85003 * 5 4 3 7 7 C 1.38952 * 119.99874 * 318.85112 * 5 4 3 8 8 N 1.31409 * 119.99624 * 341.82893 * 7 5 4 9 9 Si 1.86796 * 120.00070 * 161.83462 * 7 5 4 10 10 H 1.48492 * 109.47562 * 59.99908 * 9 7 5 11 11 H 1.48506 * 109.47033 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47148 * 299.99503 * 9 7 5 13 13 C 1.34778 * 120.00280 * 84.76698 * 4 3 2 14 14 O 1.21292 * 120.00140 * 180.02562 * 13 4 3 15 15 C 1.50699 * 119.99945 * 0.02562 * 13 4 3 16 16 C 1.52999 * 109.47524 * 179.97438 * 15 13 4 17 17 O 1.42898 * 109.47556 * 180.02562 * 16 15 13 18 18 C 1.35741 * 117.00270 * 180.02562 * 17 16 15 19 19 C 1.38920 * 119.90022 * 0.02562 * 18 17 16 20 20 C 1.37679 * 120.17622 * 179.97438 * 19 18 17 21 21 C 1.40009 * 119.97619 * 0.02562 * 20 19 18 22 22 C 1.46862 * 120.09884 * 180.02562 * 21 20 19 23 23 O 1.21298 * 120.00281 * 180.02562 * 22 21 20 24 24 C 1.40040 * 119.80546 * 359.73768 * 21 20 19 25 25 C 1.38029 * 119.82383 * 0.51630 * 24 21 20 26 26 O 1.36000 * 119.98987 * 179.75544 * 25 24 21 27 27 C 1.42894 * 117.00281 * 359.72351 * 26 25 24 28 28 H 1.09004 * 109.46878 * 299.99867 * 1 2 3 29 29 H 1.09000 * 109.47443 * 59.99811 * 1 2 3 30 30 H 1.09000 * 109.46984 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46878 * 240.00133 * 2 1 3 32 32 H 1.09000 * 109.47443 * 120.00189 * 2 1 3 33 33 H 1.09004 * 109.47026 * 60.00223 * 3 2 1 34 34 H 1.09009 * 109.47277 * 300.00360 * 3 2 1 35 35 H 0.97002 * 119.99920 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.46818 * 59.99765 * 15 13 4 37 37 H 1.09002 * 109.47523 * 300.00636 * 15 13 4 38 38 H 1.09008 * 109.46819 * 60.00169 * 16 15 13 39 39 H 1.08996 * 109.47152 * 300.00423 * 16 15 13 40 40 H 1.07998 * 119.91801 * 359.97438 * 19 18 17 41 41 H 1.07999 * 120.01304 * 180.02562 * 20 19 18 42 42 H 1.07994 * 119.99867 * 0.02562 * 22 21 20 43 43 H 1.08003 * 120.08735 * 180.26748 * 24 21 20 44 44 H 1.08991 * 109.47637 * 180.02562 * 27 26 25 45 45 H 1.09008 * 109.47134 * 59.99815 * 27 26 25 46 46 H 1.09003 * 109.46828 * 300.00512 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.5505 1.1815 6 1 5.0710 0.9482 1.3521 7 6 3.7540 2.4350 2.1600 8 7 2.9285 3.4077 1.8450 9 14 4.3401 2.2414 3.9230 10 1 5.8197 2.3586 3.9685 11 1 3.7328 3.3026 4.7659 12 1 3.9330 0.9087 4.4365 13 6 4.1784 1.3363 -1.1632 14 8 5.3913 1.3358 -1.1637 15 6 3.4244 1.2180 -2.4627 16 6 4.4182 1.1126 -3.6212 17 8 3.7032 1.0011 -4.8535 18 6 4.4420 0.8975 -5.9875 19 6 5.8292 0.9028 -5.9131 20 6 6.5841 0.7975 -7.0596 21 6 5.9535 0.6853 -8.3046 22 6 6.7561 0.5723 -9.5293 23 8 6.2079 0.4756 -10.6070 24 6 4.5551 0.6750 -8.3781 25 6 3.8061 0.7863 -7.2240 26 8 2.4479 0.7817 -7.2919 27 6 1.8636 0.6647 -8.5907 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 2.6237 4.0254 2.5280 36 1 2.7980 2.0993 -2.6007 37 1 2.7974 0.3267 -2.4391 38 1 5.0449 0.2315 -3.4833 39 1 5.0448 2.0041 -3.6446 40 1 6.3169 0.9897 -4.9534 41 1 7.6624 0.8015 -6.9987 42 1 7.8345 0.5752 -9.4703 43 1 4.0638 0.5843 -9.3357 44 1 0.7773 0.6744 -8.5027 45 1 2.1830 -0.2710 -9.0498 46 1 2.1851 1.5017 -9.2105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273284491.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:42 Heat of formation + Delta-G solvation = -119.242934 kcal Electronic energy + Delta-G solvation = -28421.125925 eV Core-core repulsion = 24277.208678 eV Total energy + Delta-G solvation = -4143.917247 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.81452 -39.23782 -38.88991 -38.34062 -36.70619 -35.34739 -32.95164 -31.74097 -31.18065 -30.62753 -30.05027 -27.67444 -26.10104 -25.27114 -24.39898 -23.44513 -22.11680 -21.10445 -20.89805 -19.00017 -18.55157 -17.68727 -16.92875 -16.77526 -16.35613 -15.86956 -15.79972 -15.64408 -15.28005 -14.97450 -14.70732 -14.45684 -14.42804 -14.19986 -14.04080 -13.79068 -13.14798 -12.97699 -12.83608 -12.74532 -12.40467 -11.97528 -11.83194 -11.68756 -11.58613 -11.43825 -11.30245 -11.23675 -11.08599 -10.87916 -10.68173 -10.55908 -10.38861 -10.28234 -10.05897 -9.94515 -9.00509 -8.95720 -8.52756 -8.01276 -7.48123 -6.36656 -4.05935 0.45014 1.12550 2.24062 3.03416 3.07542 3.16873 3.22859 3.26764 3.55340 3.82680 3.99585 4.13411 4.55574 4.68750 4.78795 4.86394 4.91266 4.97454 4.97657 5.07499 5.15773 5.26297 5.28902 5.31478 5.47278 5.55170 5.58971 5.67087 5.77998 5.83022 5.94801 6.02388 6.06895 6.10326 6.14951 6.27819 6.36701 6.39323 6.44702 6.58819 6.88141 6.94954 7.17780 7.20419 7.44731 7.53969 8.23649 8.44303 9.12267 9.33053 9.93281 10.68361 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018051 B = 0.002394 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.822141 B =11692.611472 C =12881.857745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.107 3.893 4 N -0.436 5.436 5 C -0.312 4.312 6 H 0.088 0.912 7 C 0.040 3.960 8 N -0.870 5.870 9 Si 0.919 3.081 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.466 3.534 14 O -0.585 6.585 15 C -0.134 4.134 16 C 0.075 3.925 17 O -0.301 6.301 18 C 0.154 3.846 19 C -0.194 4.194 20 C -0.054 4.054 21 C -0.208 4.208 22 C 0.388 3.612 23 O -0.472 6.472 24 C -0.116 4.116 25 C 0.078 3.922 26 O -0.303 6.303 27 C 0.026 3.974 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.050 0.950 35 H 0.269 0.731 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.149 0.851 41 H 0.138 0.862 42 H 0.105 0.895 43 H 0.143 0.857 44 H 0.101 0.899 45 H 0.054 0.946 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.879 -5.213 -16.506 17.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C -0.017 4.017 4 N -0.154 5.154 5 C -0.439 4.439 6 H 0.106 0.894 7 C -0.165 4.165 8 N -0.507 5.507 9 Si 0.745 3.255 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.254 3.746 14 O -0.469 6.469 15 C -0.175 4.175 16 C 0.000 4.000 17 O -0.213 6.213 18 C 0.106 3.894 19 C -0.212 4.212 20 C -0.073 4.073 21 C -0.210 4.210 22 C 0.248 3.752 23 O -0.346 6.346 24 C -0.135 4.135 25 C 0.032 3.968 26 O -0.217 6.217 27 C -0.070 4.070 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.166 0.834 41 H 0.155 0.845 42 H 0.121 0.879 43 H 0.160 0.840 44 H 0.120 0.880 45 H 0.073 0.927 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.043 -5.069 -16.753 17.534 hybrid contribution 0.296 0.052 0.884 0.933 sum -0.747 -5.017 -15.869 16.660 Atomic orbital electron populations 1.21679 0.96258 1.00753 1.01624 1.21987 0.95019 0.99223 1.01744 1.21584 0.82080 0.94387 1.03683 1.43391 1.04548 1.62837 1.04654 1.19329 1.12125 1.21671 0.90821 0.89406 1.25434 0.96956 0.93495 1.00599 1.69915 1.33302 1.13309 1.34176 0.86126 0.79320 0.77972 0.82045 1.19697 1.20951 1.19831 1.20007 0.87871 0.82252 0.84512 1.90524 1.14002 1.55430 1.86940 1.21529 0.98928 1.04484 0.92520 1.22658 0.94711 1.02676 0.79928 1.86084 1.35719 1.86245 1.13256 1.18665 0.89821 0.95741 0.85169 1.21252 0.91567 1.07546 1.00860 1.21111 1.00134 0.95481 0.90549 1.20546 0.93958 1.10490 0.95963 1.23915 0.94884 0.69941 0.86420 1.90513 1.76870 1.35745 1.31471 1.21239 0.93772 1.01264 0.97206 1.18143 0.83431 1.03951 0.91247 1.86217 1.16069 1.88710 1.30692 1.23082 0.99287 1.01063 0.83519 0.92742 0.93055 0.93410 0.93083 0.91672 0.87728 0.93176 0.92125 0.88986 0.89256 0.91003 0.90874 0.83356 0.84466 0.87875 0.83972 0.88035 0.92746 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.91 37.16 0.37 -1.70 16 2 C -0.14 -2.46 6.17 -26.73 -0.16 -2.63 16 3 C 0.11 2.24 4.69 -4.05 -0.02 2.22 16 4 N -0.44 -10.67 2.50 -114.81 -0.29 -10.96 16 5 C -0.31 -8.40 8.84 -14.93 -0.13 -8.53 16 6 H 0.09 2.46 7.82 -52.48 -0.41 2.05 16 7 C 0.04 1.04 4.95 -17.47 -0.09 0.95 16 8 N -0.87 -23.03 11.61 55.50 0.64 -22.39 16 9 Si 0.92 20.20 29.59 -169.99 -5.03 15.17 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 13 C 0.47 10.90 7.59 -10.99 -0.08 10.82 16 14 O -0.58 -15.46 15.89 5.55 0.09 -15.37 16 15 C -0.13 -2.43 4.67 -27.88 -0.13 -2.56 16 16 C 0.08 1.23 4.02 37.16 0.15 1.38 16 17 O -0.30 -4.78 9.90 -33.60 -0.33 -5.11 16 18 C 0.15 2.17 6.71 -38.86 -0.26 1.91 16 19 C -0.19 -2.31 9.01 -39.53 -0.36 -2.66 16 20 C -0.05 -0.51 9.78 -39.12 -0.38 -0.90 16 21 C -0.21 -2.12 5.87 -105.07 -0.62 -2.73 16 22 C 0.39 3.42 11.44 34.22 0.39 3.81 16 23 O -0.47 -5.82 17.16 5.54 0.10 -5.72 16 24 C -0.12 -1.33 8.58 -38.98 -0.33 -1.66 16 25 C 0.08 1.03 6.69 -39.19 -0.26 0.77 16 26 O -0.30 -4.00 10.27 -34.41 -0.35 -4.36 16 27 C 0.03 0.22 9.81 101.05 0.99 1.21 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.85 6.60 -51.93 -0.34 0.51 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.10 2.43 5.76 -51.93 -0.30 2.13 16 34 H 0.05 0.97 6.66 -51.92 -0.35 0.63 16 35 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 36 H 0.09 1.61 7.41 -51.93 -0.38 1.23 16 37 H 0.09 1.48 6.54 -51.93 -0.34 1.14 16 38 H 0.07 1.15 7.61 -51.92 -0.39 0.75 16 39 H 0.07 1.21 7.61 -51.93 -0.40 0.81 16 40 H 0.15 1.71 6.27 -52.49 -0.33 1.38 16 41 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.11 0.49 8.06 -52.49 -0.42 0.06 16 43 H 0.14 1.48 5.87 -52.48 -0.31 1.17 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.41 7.65 -51.92 -0.40 0.01 16 46 H 0.05 0.42 7.67 -51.93 -0.40 0.02 16 LS Contribution 385.58 15.07 5.81 5.81 Total: -1.00 -32.80 385.58 -6.73 -39.53 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.44 Total: 3.71 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -0.93 Total: -0.31 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.36 Total: -33.35 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -0.50 Total: -30.56 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.80 -6.73 -39.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273284491.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.712 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds