Wall clock time and date at job start Tue Mar 31 2020 18:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 N 1.46496 * 109.47573 * 180.02562 * 3 2 1 5 5 C 1.37097 * 120.00100 * 264.77322 * 4 3 2 6 6 H 1.08003 * 120.00206 * 138.85003 * 5 4 3 7 7 C 1.38952 * 119.99874 * 318.85112 * 5 4 3 8 8 N 1.31409 * 119.99624 * 341.82893 * 7 5 4 9 9 Si 1.86796 * 120.00070 * 161.83462 * 7 5 4 10 10 H 1.48492 * 109.47562 * 59.99908 * 9 7 5 11 11 H 1.48506 * 109.47033 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47148 * 299.99503 * 9 7 5 13 13 C 1.34778 * 120.00280 * 84.76698 * 4 3 2 14 14 O 1.21292 * 120.00140 * 180.02562 * 13 4 3 15 15 C 1.50699 * 119.99945 * 0.02562 * 13 4 3 16 16 C 1.52999 * 109.47524 * 179.97438 * 15 13 4 17 17 O 1.42898 * 109.47556 * 180.02562 * 16 15 13 18 18 C 1.35741 * 117.00270 * 180.02562 * 17 16 15 19 19 C 1.38920 * 119.90022 * 0.02562 * 18 17 16 20 20 C 1.37679 * 120.17622 * 179.97438 * 19 18 17 21 21 C 1.40009 * 119.97619 * 0.02562 * 20 19 18 22 22 C 1.46862 * 120.09884 * 180.02562 * 21 20 19 23 23 O 1.21298 * 120.00281 * 180.02562 * 22 21 20 24 24 C 1.40040 * 119.80546 * 359.73768 * 21 20 19 25 25 C 1.38029 * 119.82383 * 0.51630 * 24 21 20 26 26 O 1.36000 * 119.98987 * 179.75544 * 25 24 21 27 27 C 1.42894 * 117.00281 * 359.72351 * 26 25 24 28 28 H 1.09004 * 109.46878 * 299.99867 * 1 2 3 29 29 H 1.09000 * 109.47443 * 59.99811 * 1 2 3 30 30 H 1.09000 * 109.46984 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46878 * 240.00133 * 2 1 3 32 32 H 1.09000 * 109.47443 * 120.00189 * 2 1 3 33 33 H 1.09004 * 109.47026 * 60.00223 * 3 2 1 34 34 H 1.09009 * 109.47277 * 300.00360 * 3 2 1 35 35 H 0.97002 * 119.99920 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.46818 * 59.99765 * 15 13 4 37 37 H 1.09002 * 109.47523 * 300.00636 * 15 13 4 38 38 H 1.09008 * 109.46819 * 60.00169 * 16 15 13 39 39 H 1.08996 * 109.47152 * 300.00423 * 16 15 13 40 40 H 1.07998 * 119.91801 * 359.97438 * 19 18 17 41 41 H 1.07999 * 120.01304 * 180.02562 * 20 19 18 42 42 H 1.07994 * 119.99867 * 0.02562 * 22 21 20 43 43 H 1.08003 * 120.08735 * 180.26748 * 24 21 20 44 44 H 1.08991 * 109.47637 * 180.02562 * 27 26 25 45 45 H 1.09008 * 109.47134 * 59.99815 * 27 26 25 46 46 H 1.09003 * 109.46828 * 300.00512 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.5505 1.1815 6 1 5.0710 0.9482 1.3521 7 6 3.7540 2.4350 2.1600 8 7 2.9285 3.4077 1.8450 9 14 4.3401 2.2414 3.9230 10 1 5.8197 2.3586 3.9685 11 1 3.7328 3.3026 4.7659 12 1 3.9330 0.9087 4.4365 13 6 4.1784 1.3363 -1.1632 14 8 5.3913 1.3358 -1.1637 15 6 3.4244 1.2180 -2.4627 16 6 4.4182 1.1126 -3.6212 17 8 3.7032 1.0011 -4.8535 18 6 4.4420 0.8975 -5.9875 19 6 5.8292 0.9028 -5.9131 20 6 6.5841 0.7975 -7.0596 21 6 5.9535 0.6853 -8.3046 22 6 6.7561 0.5723 -9.5293 23 8 6.2079 0.4756 -10.6070 24 6 4.5551 0.6750 -8.3781 25 6 3.8061 0.7863 -7.2240 26 8 2.4479 0.7817 -7.2919 27 6 1.8636 0.6647 -8.5907 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 2.6237 4.0254 2.5280 36 1 2.7980 2.0993 -2.6007 37 1 2.7974 0.3267 -2.4391 38 1 5.0449 0.2315 -3.4833 39 1 5.0448 2.0041 -3.6446 40 1 6.3169 0.9897 -4.9534 41 1 7.6624 0.8015 -6.9987 42 1 7.8345 0.5752 -9.4703 43 1 4.0638 0.5843 -9.3357 44 1 0.7773 0.6744 -8.5027 45 1 2.1830 -0.2710 -9.0498 46 1 2.1851 1.5017 -9.2105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273284491.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:40 Heat of formation + Delta-G solvation = -138.766102 kcal Electronic energy + Delta-G solvation = -28421.972513 eV Core-core repulsion = 24277.208678 eV Total energy + Delta-G solvation = -4144.763835 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.75405 -40.64378 -39.96056 -39.50910 -37.63348 -37.13839 -34.66121 -33.13617 -32.87761 -31.50431 -31.10562 -28.42287 -27.79847 -26.71691 -25.55786 -24.69917 -23.09726 -22.45632 -21.90827 -20.59248 -19.70881 -18.83728 -18.55481 -17.89053 -17.53490 -17.40749 -16.80134 -16.61379 -16.55589 -16.12192 -16.02058 -15.73670 -15.63955 -15.38598 -15.22235 -15.18467 -14.46950 -14.29384 -13.96039 -13.80233 -13.69432 -13.39248 -13.23362 -12.99952 -12.98475 -12.85206 -12.61658 -12.42242 -12.29483 -12.14752 -12.05799 -12.00546 -11.97784 -11.82381 -11.45907 -10.87353 -10.80903 -10.43456 -9.89360 -9.40890 -8.96453 -8.34321 -6.11502 -0.39456 0.26364 1.39941 1.41900 1.46175 1.51535 1.86569 2.00807 2.26802 2.32573 2.70739 3.00205 3.14758 3.33481 3.65270 3.79164 3.91913 3.96440 4.02400 4.12001 4.13351 4.15599 4.30730 4.33263 4.34149 4.46581 4.48199 4.58675 4.61714 4.69226 4.72929 4.74380 4.82786 4.99629 5.02157 5.15220 5.15870 5.20029 5.29557 5.40278 5.47032 5.54465 5.58615 5.97725 6.23078 6.45347 6.50768 6.52248 7.15750 7.43230 8.02530 8.69233 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018051 B = 0.002394 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.822141 B =11692.611472 C =12881.857745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.108 3.892 4 N -0.450 5.450 5 C -0.342 4.342 6 H 0.065 0.935 7 C 0.005 3.995 8 N -0.890 5.890 9 Si 0.981 3.019 10 H -0.276 1.276 11 H -0.273 1.273 12 H -0.263 1.263 13 C 0.455 3.545 14 O -0.624 6.624 15 C -0.121 4.121 16 C 0.088 3.912 17 O -0.314 6.314 18 C 0.118 3.882 19 C -0.199 4.199 20 C -0.041 4.041 21 C -0.208 4.208 22 C 0.399 3.601 23 O -0.508 6.508 24 C -0.122 4.122 25 C 0.065 3.935 26 O -0.330 6.330 27 C 0.019 3.981 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.273 0.727 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.148 0.852 41 H 0.180 0.820 42 H 0.160 0.840 43 H 0.149 0.851 44 H 0.119 0.881 45 H 0.063 0.937 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.656 -5.786 -17.670 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.171 4.171 3 C -0.015 4.015 4 N -0.168 5.168 5 C -0.470 4.470 6 H 0.083 0.917 7 C -0.198 4.198 8 N -0.528 5.528 9 Si 0.804 3.196 10 H -0.202 1.202 11 H -0.198 1.198 12 H -0.188 1.188 13 C 0.245 3.755 14 O -0.511 6.511 15 C -0.161 4.161 16 C 0.013 3.987 17 O -0.228 6.228 18 C 0.071 3.929 19 C -0.218 4.218 20 C -0.059 4.059 21 C -0.210 4.210 22 C 0.261 3.739 23 O -0.385 6.385 24 C -0.141 4.141 25 C 0.020 3.980 26 O -0.245 6.245 27 C -0.075 4.075 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.117 0.883 37 H 0.126 0.874 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.165 0.835 41 H 0.197 0.803 42 H 0.176 0.824 43 H 0.167 0.833 44 H 0.138 0.862 45 H 0.081 0.919 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.851 -5.646 -17.932 18.819 hybrid contribution 0.265 0.245 1.119 1.175 sum -0.587 -5.401 -16.814 17.669 Atomic orbital electron populations 1.21636 0.93416 1.02414 1.02154 1.21888 0.97371 0.96520 1.01353 1.21657 0.80123 0.96640 1.03061 1.43673 1.05956 1.62727 1.04460 1.19320 1.12504 1.22477 0.92721 0.91746 1.26166 0.96896 0.92788 1.03954 1.69987 1.33797 1.13581 1.35388 0.85194 0.78425 0.78534 0.77410 1.20161 1.19805 1.18795 1.20785 0.87762 0.81063 0.85927 1.90481 1.15863 1.56981 1.87775 1.21348 0.98814 1.05589 0.90311 1.22354 0.93911 1.02310 0.80099 1.86015 1.36098 1.87248 1.13398 1.19013 0.90868 0.98220 0.84770 1.21408 0.90941 1.07503 1.01903 1.21500 1.01994 0.93305 0.89139 1.20969 0.93677 1.09074 0.97266 1.24578 0.96698 0.67864 0.84742 1.90520 1.77850 1.37465 1.32624 1.21441 0.94698 1.01049 0.96865 1.18316 0.83777 1.04504 0.91446 1.86165 1.16272 1.88911 1.33131 1.23334 1.00192 1.01835 0.82156 0.93056 0.91715 0.91178 0.92151 0.93381 0.90111 0.91848 0.91715 0.88262 0.87413 0.91069 0.91677 0.83480 0.80313 0.82413 0.83336 0.86232 0.91855 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.91 71.98 0.71 -2.97 16 2 C -0.13 -4.56 6.17 30.59 0.19 -4.37 16 3 C 0.11 4.58 4.69 86.38 0.41 4.98 16 4 N -0.45 -22.62 2.50 -635.53 -1.59 -24.22 16 5 C -0.34 -19.05 8.84 84.04 0.74 -18.31 16 6 H 0.06 3.80 7.82 -2.91 -0.02 3.78 16 7 C 0.00 0.26 4.95 84.93 0.42 0.68 16 8 N -0.89 -47.72 11.61 21.66 0.25 -47.47 16 9 Si 0.98 41.80 29.59 68.60 2.03 43.83 16 10 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 12 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 13 C 0.46 21.88 7.59 87.66 0.67 22.54 16 14 O -0.62 -34.22 15.89 -3.07 -0.05 -34.27 16 15 C -0.12 -4.39 4.67 29.85 0.14 -4.25 16 16 C 0.09 2.94 4.02 71.98 0.29 3.23 16 17 O -0.31 -10.14 9.90 -76.62 -0.76 -10.90 16 18 C 0.12 3.35 6.71 22.73 0.15 3.50 16 19 C -0.20 -4.58 9.01 22.30 0.20 -4.38 16 20 C -0.04 -0.67 9.78 22.57 0.22 -0.45 16 21 C -0.21 -3.74 5.87 -20.15 -0.12 -3.85 16 22 C 0.40 5.65 11.44 70.08 0.80 6.45 16 23 O -0.51 -11.41 17.16 -3.09 -0.05 -11.46 16 24 C -0.12 -2.67 8.58 22.66 0.19 -2.47 16 25 C 0.06 1.71 6.69 22.52 0.15 1.87 16 26 O -0.33 -8.75 10.27 -79.52 -0.82 -9.57 16 27 C 0.02 0.32 9.81 113.37 1.11 1.43 16 28 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.94 6.60 -2.38 -0.02 1.93 16 32 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.08 3.82 5.76 -2.38 -0.01 3.80 16 34 H 0.06 2.45 6.66 -2.38 -0.02 2.43 16 35 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 36 H 0.10 3.47 7.41 -2.39 -0.02 3.45 16 37 H 0.11 3.50 6.54 -2.39 -0.02 3.49 16 38 H 0.07 2.33 7.61 -2.38 -0.02 2.32 16 39 H 0.06 2.23 7.61 -2.39 -0.02 2.21 16 40 H 0.15 3.37 6.27 -2.91 -0.02 3.35 16 41 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 42 H 0.16 0.62 8.06 -2.91 -0.02 0.59 16 43 H 0.15 2.97 5.87 -2.91 -0.02 2.95 16 44 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.06 0.91 7.65 -2.38 -0.02 0.89 16 46 H 0.06 0.91 7.67 -2.39 -0.02 0.89 16 Total: -1.00 -74.29 385.58 6.29 -68.00 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 1.00 Total: 22.44 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 6.28 Total: 3.63 kcal Atomic # 7 Polarization: -70.35 SS G_CDS: -1.34 Total: -71.69 kcal Atomic # 8 Polarization: -64.52 SS G_CDS: -1.68 Total: -66.20 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -74.29 6.29 -68.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273284491.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.770 kcal (2) G-P(sol) polarization free energy of solvation -74.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds