Wall clock time and date at job start Tue Mar 31 2020 19:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.42283 * 2 1 4 4 O 1.44423 * 110.37003 * 237.68706 * 2 1 3 5 5 C 1.44435 * 105.27422 * 200.65644 * 4 2 1 6 6 C 1.54474 * 104.79981 * 40.51448 * 5 4 2 7 7 C 1.54504 * 104.18803 * 335.95275 * 6 5 4 8 8 O 1.42901 * 110.51706 * 118.71425 * 7 6 5 9 9 C 1.52998 * 110.51337 * 241.42618 * 7 6 5 10 10 N 1.46504 * 109.46959 * 303.54529 * 9 7 6 11 11 C 1.34779 * 120.00120 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99612 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00323 * 179.97438 * 11 10 9 14 14 C 1.50693 * 109.47568 * 179.97438 * 13 11 10 15 15 C 1.38329 * 119.96685 * 89.99777 * 14 13 11 16 16 C 1.38272 * 120.13873 * 180.02562 * 15 14 13 17 17 C 1.38120 * 120.07038 * 359.97438 * 16 15 14 18 18 C 1.38853 * 119.93043 * 0.02562 * 17 16 15 19 19 O 1.35755 * 120.06911 * 180.02562 * 18 17 16 20 20 C 1.34827 * 117.00059 * 354.46319 * 19 18 17 21 21 H 1.08001 * 120.00364 * 5.06258 * 20 19 18 22 22 C 1.38653 * 120.00224 * 185.05745 * 20 19 18 23 23 N 1.31554 * 119.99931 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00340 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.46975 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47469 * 119.99682 * 24 22 20 27 27 H 1.48497 * 109.47013 * 240.00225 * 24 22 20 28 28 C 1.38076 * 119.96663 * 269.72729 * 14 13 11 29 29 H 1.09003 * 109.47132 * 180.85569 * 1 2 3 30 30 H 1.08998 * 109.47096 * 300.85653 * 1 2 3 31 31 H 1.08999 * 109.47079 * 60.85603 * 1 2 3 32 32 H 1.08995 * 110.36984 * 281.68356 * 5 4 2 33 33 H 1.08994 * 110.46554 * 159.39360 * 5 4 2 34 34 H 1.09001 * 110.51409 * 94.66467 * 6 5 4 35 35 H 1.09004 * 110.50971 * 217.23918 * 6 5 4 36 36 H 0.96698 * 113.99858 * 61.44743 * 8 7 6 37 37 H 1.09004 * 109.47226 * 63.54210 * 9 7 6 38 38 H 1.09002 * 109.47471 * 183.54598 * 9 7 6 39 39 H 0.97002 * 120.00024 * 359.97438 * 10 9 7 40 40 H 1.08998 * 109.46779 * 300.00168 * 13 11 10 41 41 H 1.09002 * 109.46836 * 59.99453 * 13 11 10 42 42 H 1.07995 * 119.92605 * 0.02562 * 15 14 13 43 43 H 1.08005 * 119.96551 * 179.97438 * 16 15 14 44 44 H 1.07997 * 120.03702 * 180.02562 * 17 16 15 45 45 H 0.97003 * 120.00204 * 180.02562 * 23 22 20 46 46 H 1.08006 * 120.03575 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9104 1.0215 0.0000 4 8 2.0327 -0.7237 -1.1442 5 6 3.3874 -1.0872 -0.7994 6 6 3.3178 -1.5057 0.6859 7 6 2.0693 -0.7740 1.2274 8 8 1.0998 -1.7150 1.6928 9 6 2.4586 0.1944 2.3461 10 7 3.1610 -0.5376 3.4031 11 6 3.6007 0.1152 4.4971 12 8 3.4154 1.3088 4.6063 13 6 4.3227 -0.6378 5.5847 14 6 4.7062 0.3159 6.6866 15 6 3.8371 0.5414 7.7389 16 6 4.1852 1.4162 8.7516 17 6 5.4028 2.0673 8.7156 18 6 6.2774 1.8431 7.6607 19 8 7.4750 2.4812 7.6228 20 6 7.7071 3.4047 8.5772 21 1 6.9918 3.5501 9.3733 22 6 8.8640 4.1679 8.5369 23 7 9.7350 3.9912 7.5670 24 14 9.1858 5.4470 9.8597 25 1 8.0610 5.4501 10.8294 26 1 10.4494 5.1199 10.5677 27 1 9.3023 6.7884 9.2333 28 6 5.9272 0.9595 6.6478 29 1 -0.3633 -1.0276 0.0153 30 1 -0.3633 0.5271 0.8822 31 1 -0.3633 0.5005 -0.8976 32 1 4.0525 -0.2324 -0.9221 33 1 3.7261 -1.9217 -1.4133 34 1 3.1955 -2.5853 0.7733 35 1 4.2120 -1.1794 1.2170 36 1 1.4091 -2.2705 2.4214 37 1 3.1120 0.9692 1.9451 38 1 1.5601 0.6540 2.7579 39 1 3.3088 -1.4924 3.3159 40 1 3.6692 -1.4126 5.9854 41 1 5.2213 -1.0974 5.1732 42 1 2.8847 0.0332 7.7694 43 1 3.5043 1.5905 9.5716 44 1 5.6743 2.7501 9.5070 45 1 10.5446 4.5248 7.5390 46 1 6.6071 0.7801 5.8280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279467173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:02 Heat of formation + Delta-G solvation = -132.852026 kcal Electronic energy + Delta-G solvation = -28353.309432 eV Core-core repulsion = 24208.802050 eV Total energy + Delta-G solvation = -4144.507381 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.82173 -39.65807 -38.74156 -36.93447 -36.41906 -34.51255 -32.44593 -32.11953 -31.97740 -31.45059 -29.24607 -28.22813 -26.67132 -25.24345 -24.43989 -22.77287 -21.66847 -21.20443 -20.88661 -20.27797 -18.12007 -17.55108 -17.01410 -16.92210 -16.34291 -16.10187 -15.84115 -15.62968 -15.31787 -15.02528 -14.64695 -14.51587 -14.34137 -13.92170 -13.65935 -13.49144 -13.31060 -13.18639 -12.78081 -12.71254 -12.59564 -12.45270 -12.37045 -11.81676 -11.63031 -11.52939 -11.50732 -11.27535 -11.16194 -10.84868 -10.75691 -10.60554 -10.56582 -10.40957 -10.18430 -9.82180 -9.31590 -9.30538 -8.81760 -8.05650 -7.19842 -6.42022 -4.00908 2.08822 2.40724 2.68318 2.98142 3.14167 3.16032 3.21116 3.34191 3.56944 3.98797 4.00707 4.14517 4.25572 4.54173 4.61990 4.73568 4.85965 4.94958 4.97516 5.02338 5.16126 5.17726 5.19987 5.24798 5.30685 5.38454 5.45785 5.48201 5.54334 5.63675 5.66017 5.75749 5.94316 5.97794 6.15494 6.19350 6.35139 6.39851 6.67111 6.93115 7.08029 7.09697 7.27313 7.27583 7.39171 7.46206 7.84500 8.03263 8.20648 9.04035 9.74662 10.76407 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018955 B = 0.002126 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.822110 B =13164.128691 C =13897.125806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.088 3.912 3 H 0.084 0.916 4 O -0.365 6.365 5 C 0.047 3.953 6 C -0.189 4.189 7 C 0.095 3.905 8 O -0.539 6.539 9 C 0.101 3.899 10 N -0.741 5.741 11 C 0.514 3.486 12 O -0.512 6.512 13 C -0.093 4.093 14 C -0.034 4.034 15 C -0.197 4.197 16 C -0.074 4.074 17 C -0.230 4.230 18 C 0.154 3.846 19 O -0.180 6.180 20 C -0.390 4.390 21 H 0.092 0.908 22 C 0.038 3.962 23 N -0.865 5.865 24 Si 0.941 3.059 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.276 1.276 28 C -0.174 4.174 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.375 0.625 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.396 0.604 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.126 0.874 45 H 0.269 0.731 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.652 -13.416 -12.449 23.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.030 3.970 3 H 0.102 0.898 4 O -0.284 6.284 5 C -0.030 4.030 6 C -0.227 4.227 7 C 0.053 3.947 8 O -0.345 6.345 9 C -0.023 4.023 10 N -0.397 5.397 11 C 0.301 3.699 12 O -0.385 6.385 13 C -0.132 4.132 14 C -0.035 4.035 15 C -0.216 4.216 16 C -0.093 4.093 17 C -0.250 4.250 18 C 0.101 3.899 19 O -0.084 6.084 20 C -0.466 4.466 21 H 0.109 0.891 22 C -0.166 4.166 23 N -0.500 5.500 24 Si 0.766 3.234 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.202 1.202 28 C -0.194 4.194 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.223 0.777 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.230 0.770 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.144 0.856 45 H 0.079 0.921 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.838 -12.194 -13.249 23.332 hybrid contribution 0.800 -0.005 1.283 1.512 sum -14.038 -12.198 -11.966 22.115 Atomic orbital electron populations 1.21592 0.91928 1.03816 1.02130 1.22997 0.96801 0.94507 0.82731 0.89797 1.89200 1.27020 1.74629 1.37579 1.23333 0.84838 1.00411 0.94408 1.23760 0.98993 1.02203 0.97767 1.22866 0.88285 0.89559 0.93975 1.86620 1.40785 1.51676 1.55390 1.21911 0.98000 0.94692 0.87745 1.46008 1.60926 1.12007 1.20729 1.20814 0.78657 0.88217 0.82229 1.90783 1.54833 1.14934 1.78000 1.20584 1.01148 0.97942 0.93571 1.18638 0.93899 0.96901 0.94081 1.20343 0.99518 1.04653 0.97041 1.20682 0.95602 0.95552 0.97439 1.21183 0.96183 1.06260 1.01344 1.19272 0.86141 0.91687 0.92786 1.83973 1.27468 1.47296 1.49639 1.21366 1.06696 1.14073 1.04492 0.89060 1.25279 0.95093 0.98024 0.98179 1.70049 1.09881 1.39193 1.30869 0.85651 0.78743 0.79580 0.79473 1.19114 1.20181 1.20168 1.19933 0.97649 1.02164 0.99631 0.90725 0.91000 0.92038 0.91751 0.88669 0.89374 0.89167 0.77675 0.90323 0.90199 0.77045 0.88321 0.88235 0.87951 0.87461 0.85595 0.92149 0.86874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.06 37.16 0.34 -0.78 16 2 C 0.09 0.75 3.46 -25.78 -0.09 0.66 16 3 H 0.08 0.66 7.78 -51.93 -0.40 0.25 16 4 O -0.37 -3.58 11.34 -35.23 -0.40 -3.98 16 5 C 0.05 0.33 7.63 37.93 0.29 0.62 16 6 C -0.19 -1.15 5.84 -25.17 -0.15 -1.30 16 7 C 0.09 0.70 0.99 -88.88 -0.09 0.61 16 8 O -0.54 -3.90 11.39 -35.23 -0.40 -4.31 16 9 C 0.10 0.90 4.74 -4.04 -0.02 0.88 16 10 N -0.74 -6.43 4.84 -60.29 -0.29 -6.73 16 11 C 0.51 6.88 7.82 -10.99 -0.09 6.79 16 12 O -0.51 -9.67 16.03 5.56 0.09 -9.58 16 13 C -0.09 -1.14 5.83 -29.04 -0.17 -1.31 16 14 C -0.03 -0.62 4.37 -104.65 -0.46 -1.07 16 15 C -0.20 -3.50 9.70 -39.54 -0.38 -3.89 16 16 C -0.07 -1.43 10.04 -39.61 -0.40 -1.82 16 17 C -0.23 -5.20 9.17 -39.40 -0.36 -5.56 16 18 C 0.15 3.85 6.65 -39.11 -0.26 3.59 16 19 O -0.18 -5.25 9.76 0.04 0.00 -5.25 16 20 C -0.39 -11.12 9.49 30.89 0.29 -10.83 16 21 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 22 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 23 N -0.86 -25.72 13.67 55.48 0.76 -24.96 16 24 Si 0.94 20.88 29.55 -169.99 -5.02 15.85 16 25 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 26 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 27 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 28 C -0.17 -3.77 9.64 -39.40 -0.38 -4.15 16 29 H 0.07 0.68 7.35 -51.93 -0.38 0.30 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.45 8.00 -51.93 -0.42 0.03 16 35 H 0.09 0.53 7.29 -51.93 -0.38 0.15 16 36 H 0.38 1.51 8.43 45.56 0.38 1.89 16 37 H 0.08 0.79 8.00 -51.93 -0.42 0.38 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.40 2.04 7.39 -40.82 -0.30 1.74 16 40 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16 41 H 0.10 1.02 8.08 -51.93 -0.42 0.60 16 42 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 43 H 0.11 1.73 8.06 -52.48 -0.42 1.30 16 44 H 0.13 2.83 5.64 -52.49 -0.30 2.53 16 45 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.11 2.36 8.06 -52.48 -0.42 1.94 16 LS Contribution 382.29 15.07 5.76 5.76 Total: -1.00 -36.38 382.29 -7.36 -43.74 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.84 Total: 6.04 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -2.02 Total: -16.59 kcal Atomic # 7 Polarization: -32.15 SS G_CDS: 0.47 Total: -31.68 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.71 Total: -23.11 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.38 -7.36 -43.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279467173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.113 kcal (2) G-P(sol) polarization free energy of solvation -36.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds