Wall clock time and date at job start Tue Mar 31 2020 19:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.42283 * 2 1 4 4 O 1.44423 * 110.37003 * 237.68706 * 2 1 3 5 5 C 1.44435 * 105.27422 * 200.65644 * 4 2 1 6 6 C 1.54474 * 104.79981 * 40.51448 * 5 4 2 7 7 C 1.54504 * 104.18803 * 335.95275 * 6 5 4 8 8 O 1.42901 * 110.51706 * 118.71425 * 7 6 5 9 9 C 1.52998 * 110.51337 * 241.42618 * 7 6 5 10 10 N 1.46504 * 109.46959 * 303.54529 * 9 7 6 11 11 C 1.34779 * 120.00120 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99612 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00323 * 179.97438 * 11 10 9 14 14 C 1.50693 * 109.47568 * 179.97438 * 13 11 10 15 15 C 1.38329 * 119.96685 * 89.99777 * 14 13 11 16 16 C 1.38272 * 120.13873 * 180.02562 * 15 14 13 17 17 C 1.38120 * 120.07038 * 359.97438 * 16 15 14 18 18 C 1.38853 * 119.93043 * 0.02562 * 17 16 15 19 19 O 1.35755 * 120.06911 * 180.02562 * 18 17 16 20 20 C 1.34827 * 117.00059 * 354.46319 * 19 18 17 21 21 H 1.08001 * 120.00364 * 5.06258 * 20 19 18 22 22 C 1.38653 * 120.00224 * 185.05745 * 20 19 18 23 23 N 1.31554 * 119.99931 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00340 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.46975 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47469 * 119.99682 * 24 22 20 27 27 H 1.48497 * 109.47013 * 240.00225 * 24 22 20 28 28 C 1.38076 * 119.96663 * 269.72729 * 14 13 11 29 29 H 1.09003 * 109.47132 * 180.85569 * 1 2 3 30 30 H 1.08998 * 109.47096 * 300.85653 * 1 2 3 31 31 H 1.08999 * 109.47079 * 60.85603 * 1 2 3 32 32 H 1.08995 * 110.36984 * 281.68356 * 5 4 2 33 33 H 1.08994 * 110.46554 * 159.39360 * 5 4 2 34 34 H 1.09001 * 110.51409 * 94.66467 * 6 5 4 35 35 H 1.09004 * 110.50971 * 217.23918 * 6 5 4 36 36 H 0.96698 * 113.99858 * 61.44743 * 8 7 6 37 37 H 1.09004 * 109.47226 * 63.54210 * 9 7 6 38 38 H 1.09002 * 109.47471 * 183.54598 * 9 7 6 39 39 H 0.97002 * 120.00024 * 359.97438 * 10 9 7 40 40 H 1.08998 * 109.46779 * 300.00168 * 13 11 10 41 41 H 1.09002 * 109.46836 * 59.99453 * 13 11 10 42 42 H 1.07995 * 119.92605 * 0.02562 * 15 14 13 43 43 H 1.08005 * 119.96551 * 179.97438 * 16 15 14 44 44 H 1.07997 * 120.03702 * 180.02562 * 17 16 15 45 45 H 0.97003 * 120.00204 * 180.02562 * 23 22 20 46 46 H 1.08006 * 120.03575 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9104 1.0215 0.0000 4 8 2.0327 -0.7237 -1.1442 5 6 3.3874 -1.0872 -0.7994 6 6 3.3178 -1.5057 0.6859 7 6 2.0693 -0.7740 1.2274 8 8 1.0998 -1.7150 1.6928 9 6 2.4586 0.1944 2.3461 10 7 3.1610 -0.5376 3.4031 11 6 3.6007 0.1152 4.4971 12 8 3.4154 1.3088 4.6063 13 6 4.3227 -0.6378 5.5847 14 6 4.7062 0.3159 6.6866 15 6 3.8371 0.5414 7.7389 16 6 4.1852 1.4162 8.7516 17 6 5.4028 2.0673 8.7156 18 6 6.2774 1.8431 7.6607 19 8 7.4750 2.4812 7.6228 20 6 7.7071 3.4047 8.5772 21 1 6.9918 3.5501 9.3733 22 6 8.8640 4.1679 8.5369 23 7 9.7350 3.9912 7.5670 24 14 9.1858 5.4470 9.8597 25 1 8.0610 5.4501 10.8294 26 1 10.4494 5.1199 10.5677 27 1 9.3023 6.7884 9.2333 28 6 5.9272 0.9595 6.6478 29 1 -0.3633 -1.0276 0.0153 30 1 -0.3633 0.5271 0.8822 31 1 -0.3633 0.5005 -0.8976 32 1 4.0525 -0.2324 -0.9221 33 1 3.7261 -1.9217 -1.4133 34 1 3.1955 -2.5853 0.7733 35 1 4.2120 -1.1794 1.2170 36 1 1.4091 -2.2705 2.4214 37 1 3.1120 0.9692 1.9451 38 1 1.5601 0.6540 2.7579 39 1 3.3088 -1.4924 3.3159 40 1 3.6692 -1.4126 5.9854 41 1 5.2213 -1.0974 5.1732 42 1 2.8847 0.0332 7.7694 43 1 3.5043 1.5905 9.5716 44 1 5.6743 2.7501 9.5070 45 1 10.5446 4.5248 7.5390 46 1 6.6071 0.7801 5.8280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279467173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:01 Heat of formation + Delta-G solvation = -161.568651 kcal Electronic energy + Delta-G solvation = -28354.554678 eV Core-core repulsion = 24208.802050 eV Total energy + Delta-G solvation = -4145.752628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.55886 -40.91520 -40.21229 -38.23423 -37.50090 -35.38858 -34.34667 -33.52332 -32.61841 -32.19367 -30.89213 -29.28314 -27.79514 -27.16478 -25.16902 -23.51716 -23.22726 -22.61354 -21.54363 -21.41525 -19.57108 -18.95671 -18.51764 -17.75981 -17.15994 -16.87544 -16.79984 -16.63242 -16.46223 -16.15846 -16.07998 -15.86966 -15.52626 -15.37010 -14.97155 -14.71584 -14.41332 -14.32443 -13.98158 -13.83069 -13.60195 -13.36298 -13.26960 -13.15436 -12.99100 -12.73639 -12.51804 -12.35879 -12.21775 -12.18558 -12.08702 -12.07342 -11.79613 -11.21104 -11.16634 -10.98296 -10.81352 -10.76928 -10.20220 -9.63323 -8.97310 -8.47855 -6.16026 0.52153 0.76249 1.33400 1.42184 1.52032 1.65369 2.08187 2.17346 2.76135 2.84514 3.02632 3.16730 3.44142 3.45219 3.53711 3.64853 3.81164 4.08216 4.10399 4.12379 4.16692 4.31036 4.32834 4.35818 4.45328 4.58225 4.60554 4.65164 4.66181 4.69010 4.74678 4.80427 4.88250 4.97103 5.00953 5.07541 5.13144 5.30118 5.32161 5.34230 5.65603 5.73312 5.75884 5.79650 6.02747 6.23911 6.49274 6.71077 6.97167 7.26396 7.78831 8.76006 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018955 B = 0.002126 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.822110 B =13164.128691 C =13897.125806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.078 3.922 3 H 0.085 0.915 4 O -0.387 6.387 5 C 0.038 3.962 6 C -0.182 4.182 7 C 0.108 3.892 8 O -0.547 6.547 9 C 0.105 3.895 10 N -0.714 5.714 11 C 0.516 3.484 12 O -0.577 6.577 13 C -0.090 4.090 14 C -0.027 4.027 15 C -0.180 4.180 16 C -0.075 4.075 17 C -0.248 4.248 18 C 0.110 3.890 19 O -0.234 6.234 20 C -0.413 4.413 21 H 0.100 0.900 22 C -0.025 4.025 23 N -0.922 5.922 24 Si 1.019 2.981 25 H -0.252 1.252 26 H -0.265 1.265 27 H -0.269 1.269 28 C -0.192 4.192 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.391 0.609 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.418 0.582 40 H 0.148 0.852 41 H 0.125 0.875 42 H 0.148 0.852 43 H 0.144 0.856 44 H 0.116 0.884 45 H 0.272 0.728 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.966 -15.724 -11.918 26.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.019 3.981 3 H 0.102 0.898 4 O -0.307 6.307 5 C -0.038 4.038 6 C -0.220 4.220 7 C 0.066 3.934 8 O -0.355 6.355 9 C -0.020 4.020 10 N -0.369 5.369 11 C 0.304 3.696 12 O -0.455 6.455 13 C -0.129 4.129 14 C -0.027 4.027 15 C -0.199 4.199 16 C -0.093 4.093 17 C -0.267 4.267 18 C 0.060 3.940 19 O -0.141 6.141 20 C -0.489 4.489 21 H 0.117 0.883 22 C -0.222 4.222 23 N -0.561 5.561 24 Si 0.838 3.162 25 H -0.176 1.176 26 H -0.190 1.190 27 H -0.194 1.194 28 C -0.211 4.211 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.114 0.886 36 H 0.241 0.759 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.256 0.744 40 H 0.165 0.835 41 H 0.143 0.857 42 H 0.166 0.834 43 H 0.162 0.838 44 H 0.134 0.866 45 H 0.081 0.919 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.203 -14.606 -12.736 25.912 hybrid contribution 1.228 0.471 0.992 1.647 sum -15.975 -14.135 -11.744 24.350 Atomic orbital electron populations 1.21560 0.91895 1.03266 1.02428 1.23108 0.96985 0.94808 0.83155 0.89772 1.89177 1.28322 1.74861 1.38320 1.23530 0.83818 1.01051 0.95435 1.23737 0.98317 1.03068 0.96879 1.22621 0.88775 0.89269 0.92727 1.86613 1.40993 1.51724 1.56220 1.21853 0.97130 0.94984 0.88035 1.45702 1.59119 1.12971 1.19157 1.20964 0.78146 0.87384 0.83147 1.90781 1.57647 1.17610 1.79480 1.20713 1.03251 0.97281 0.91667 1.19215 0.91840 0.96130 0.95539 1.20988 1.00634 1.02763 0.95468 1.21134 0.94498 0.94718 0.98955 1.21294 0.97564 1.07143 1.00722 1.19900 0.86092 0.92992 0.94967 1.83931 1.30122 1.49126 1.50966 1.21849 1.07422 1.14625 1.04990 0.88313 1.26598 0.94457 1.00224 1.00891 1.70190 1.10907 1.41294 1.33677 0.84524 0.79183 0.76141 0.76305 1.17574 1.19014 1.19442 1.20237 0.99502 1.02445 0.98936 0.91580 0.90632 0.91873 0.91661 0.87360 0.87623 0.88642 0.75883 0.91633 0.91433 0.74435 0.83461 0.85710 0.83411 0.83845 0.86639 0.91861 0.87417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 9.06 71.98 0.65 -1.43 16 2 C 0.08 1.24 3.46 31.21 0.11 1.35 16 3 H 0.08 1.30 7.78 -2.39 -0.02 1.28 16 4 O -0.39 -7.17 11.34 -148.98 -1.69 -8.86 16 5 C 0.04 0.48 7.63 72.48 0.55 1.03 16 6 C -0.18 -1.71 5.84 31.61 0.18 -1.53 16 7 C 0.11 1.35 0.99 -9.67 -0.01 1.34 16 8 O -0.55 -6.33 11.39 -148.98 -1.70 -8.02 16 9 C 0.10 1.69 4.74 86.38 0.41 2.10 16 10 N -0.71 -10.03 4.84 -463.05 -2.24 -12.27 16 11 C 0.52 12.30 7.82 87.66 0.69 12.99 16 12 O -0.58 -21.17 16.03 -3.03 -0.05 -21.22 16 13 C -0.09 -1.82 5.83 29.10 0.17 -1.65 16 14 C -0.03 -0.89 4.37 -19.88 -0.09 -0.97 16 15 C -0.18 -5.72 9.70 22.30 0.22 -5.50 16 16 C -0.08 -2.71 10.04 22.25 0.22 -2.48 16 17 C -0.25 -11.40 9.17 22.39 0.21 -11.19 16 18 C 0.11 5.76 6.65 22.58 0.15 5.91 16 19 O -0.23 -14.65 9.76 -22.76 -0.22 -14.88 16 20 C -0.41 -24.91 9.49 67.92 0.64 -24.27 16 21 H 0.10 5.52 5.20 -2.91 -0.02 5.51 16 22 C -0.02 -1.44 5.49 84.83 0.47 -0.98 16 23 N -0.92 -57.91 13.67 21.61 0.30 -57.62 16 24 Si 1.02 44.11 29.55 68.60 2.03 46.14 16 25 H -0.25 -10.13 7.11 99.48 0.71 -9.43 16 26 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 28 C -0.19 -8.44 9.64 22.39 0.22 -8.23 16 29 H 0.07 1.13 7.35 -2.39 -0.02 1.11 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.11 0.66 8.00 -2.39 -0.02 0.64 16 35 H 0.10 0.82 7.29 -2.38 -0.02 0.80 16 36 H 0.39 1.56 8.43 -74.06 -0.62 0.93 16 37 H 0.07 1.28 8.00 -2.39 -0.02 1.26 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.42 2.33 7.39 -92.71 -0.69 1.64 16 40 H 0.15 1.63 8.09 -2.39 -0.02 1.61 16 41 H 0.12 1.98 8.08 -2.39 -0.02 1.96 16 42 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 43 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 44 H 0.12 5.40 5.64 -2.91 -0.02 5.39 16 45 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 46 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -87.16 382.29 0.92 -86.24 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: -0.29 Total: 24.00 kcal Atomic # 6 Polarization: -38.29 SS G_CDS: 4.79 Total: -33.50 kcal Atomic # 7 Polarization: -67.94 SS G_CDS: -1.95 Total: -69.89 kcal Atomic # 8 Polarization: -49.32 SS G_CDS: -3.66 Total: -52.98 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -87.16 0.92 -86.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279467173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.333 kcal (2) G-P(sol) polarization free energy of solvation -87.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds