Wall clock time and date at job start Tue Mar 31 2020 19:24:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08998 * 110.42283 * 2 1
4 4 O 1.44423 * 110.37003 * 237.68706 * 2 1 3
5 5 C 1.44435 * 105.27422 * 200.65644 * 4 2 1
6 6 C 1.54474 * 104.79981 * 40.51448 * 5 4 2
7 7 C 1.54504 * 104.18803 * 335.95275 * 6 5 4
8 8 O 1.42901 * 110.51706 * 118.71425 * 7 6 5
9 9 C 1.52998 * 110.51337 * 241.42618 * 7 6 5
10 10 N 1.46504 * 109.46959 * 303.54529 * 9 7 6
11 11 C 1.34779 * 120.00120 * 180.02562 * 10 9 7
12 12 O 1.21281 * 119.99612 * 359.97438 * 11 10 9
13 13 C 1.50697 * 120.00323 * 179.97438 * 11 10 9
14 14 C 1.50693 * 109.47568 * 179.97438 * 13 11 10
15 15 C 1.38329 * 119.96685 * 89.99777 * 14 13 11
16 16 C 1.38272 * 120.13873 * 180.02562 * 15 14 13
17 17 C 1.38120 * 120.07038 * 359.97438 * 16 15 14
18 18 C 1.38853 * 119.93043 * 0.02562 * 17 16 15
19 19 O 1.35755 * 120.06911 * 180.02562 * 18 17 16
20 20 C 1.34827 * 117.00059 * 354.46319 * 19 18 17
21 21 H 1.08001 * 120.00364 * 5.06258 * 20 19 18
22 22 C 1.38653 * 120.00224 * 185.05745 * 20 19 18
23 23 N 1.31554 * 119.99931 * 0.02562 * 22 20 19
24 24 Si 1.86802 * 120.00340 * 180.02562 * 22 20 19
25 25 H 1.48507 * 109.46975 * 359.97438 * 24 22 20
26 26 H 1.48495 * 109.47469 * 119.99682 * 24 22 20
27 27 H 1.48497 * 109.47013 * 240.00225 * 24 22 20
28 28 C 1.38076 * 119.96663 * 269.72729 * 14 13 11
29 29 H 1.09003 * 109.47132 * 180.85569 * 1 2 3
30 30 H 1.08998 * 109.47096 * 300.85653 * 1 2 3
31 31 H 1.08999 * 109.47079 * 60.85603 * 1 2 3
32 32 H 1.08995 * 110.36984 * 281.68356 * 5 4 2
33 33 H 1.08994 * 110.46554 * 159.39360 * 5 4 2
34 34 H 1.09001 * 110.51409 * 94.66467 * 6 5 4
35 35 H 1.09004 * 110.50971 * 217.23918 * 6 5 4
36 36 H 0.96698 * 113.99858 * 61.44743 * 8 7 6
37 37 H 1.09004 * 109.47226 * 63.54210 * 9 7 6
38 38 H 1.09002 * 109.47471 * 183.54598 * 9 7 6
39 39 H 0.97002 * 120.00024 * 359.97438 * 10 9 7
40 40 H 1.08998 * 109.46779 * 300.00168 * 13 11 10
41 41 H 1.09002 * 109.46836 * 59.99453 * 13 11 10
42 42 H 1.07995 * 119.92605 * 0.02562 * 15 14 13
43 43 H 1.08005 * 119.96551 * 179.97438 * 16 15 14
44 44 H 1.07997 * 120.03702 * 180.02562 * 17 16 15
45 45 H 0.97003 * 120.00204 * 180.02562 * 23 22 20
46 46 H 1.08006 * 120.03575 * 0.02562 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9104 1.0215 0.0000
4 8 2.0327 -0.7237 -1.1442
5 6 3.3874 -1.0872 -0.7994
6 6 3.3178 -1.5057 0.6859
7 6 2.0693 -0.7740 1.2274
8 8 1.0998 -1.7150 1.6928
9 6 2.4586 0.1944 2.3461
10 7 3.1610 -0.5376 3.4031
11 6 3.6007 0.1152 4.4971
12 8 3.4154 1.3088 4.6063
13 6 4.3227 -0.6378 5.5847
14 6 4.7062 0.3159 6.6866
15 6 3.8371 0.5414 7.7389
16 6 4.1852 1.4162 8.7516
17 6 5.4028 2.0673 8.7156
18 6 6.2774 1.8431 7.6607
19 8 7.4750 2.4812 7.6228
20 6 7.7071 3.4047 8.5772
21 1 6.9918 3.5501 9.3733
22 6 8.8640 4.1679 8.5369
23 7 9.7350 3.9912 7.5670
24 14 9.1858 5.4470 9.8597
25 1 8.0610 5.4501 10.8294
26 1 10.4494 5.1199 10.5677
27 1 9.3023 6.7884 9.2333
28 6 5.9272 0.9595 6.6478
29 1 -0.3633 -1.0276 0.0153
30 1 -0.3633 0.5271 0.8822
31 1 -0.3633 0.5005 -0.8976
32 1 4.0525 -0.2324 -0.9221
33 1 3.7261 -1.9217 -1.4133
34 1 3.1955 -2.5853 0.7733
35 1 4.2120 -1.1794 1.2170
36 1 1.4091 -2.2705 2.4214
37 1 3.1120 0.9692 1.9451
38 1 1.5601 0.6540 2.7579
39 1 3.3088 -1.4924 3.3159
40 1 3.6692 -1.4126 5.9854
41 1 5.2213 -1.0974 5.1732
42 1 2.8847 0.0332 7.7694
43 1 3.5043 1.5905 9.5716
44 1 5.6743 2.7501 9.5070
45 1 10.5446 4.5248 7.5390
46 1 6.6071 0.7801 5.8280
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000279467173.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:24:01
Heat of formation + Delta-G solvation = -161.568651 kcal
Electronic energy + Delta-G solvation = -28354.554678 eV
Core-core repulsion = 24208.802050 eV
Total energy + Delta-G solvation = -4145.752628 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.161 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-41.55886 -40.91520 -40.21229 -38.23423 -37.50090 -35.38858 -34.34667 -33.52332
-32.61841 -32.19367 -30.89213 -29.28314 -27.79514 -27.16478 -25.16902 -23.51716
-23.22726 -22.61354 -21.54363 -21.41525 -19.57108 -18.95671 -18.51764 -17.75981
-17.15994 -16.87544 -16.79984 -16.63242 -16.46223 -16.15846 -16.07998 -15.86966
-15.52626 -15.37010 -14.97155 -14.71584 -14.41332 -14.32443 -13.98158 -13.83069
-13.60195 -13.36298 -13.26960 -13.15436 -12.99100 -12.73639 -12.51804 -12.35879
-12.21775 -12.18558 -12.08702 -12.07342 -11.79613 -11.21104 -11.16634 -10.98296
-10.81352 -10.76928 -10.20220 -9.63323 -8.97310 -8.47855 -6.16026 0.52153
0.76249 1.33400 1.42184 1.52032 1.65369 2.08187 2.17346 2.76135
2.84514 3.02632 3.16730 3.44142 3.45219 3.53711 3.64853 3.81164
4.08216 4.10399 4.12379 4.16692 4.31036 4.32834 4.35818 4.45328
4.58225 4.60554 4.65164 4.66181 4.69010 4.74678 4.80427 4.88250
4.97103 5.00953 5.07541 5.13144 5.30118 5.32161 5.34230 5.65603
5.73312 5.75884 5.79650 6.02747 6.23911 6.49274 6.71077 6.97167
7.26396 7.78831 8.76006
Molecular weight = 335.16amu
Principal moments of inertia in cm(-1)
A = 0.018955 B = 0.002126 C = 0.002014
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1476.822110 B =13164.128691 C =13897.125806
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C 0.078 3.922
3 H 0.085 0.915
4 O -0.387 6.387
5 C 0.038 3.962
6 C -0.182 4.182
7 C 0.108 3.892
8 O -0.547 6.547
9 C 0.105 3.895
10 N -0.714 5.714
11 C 0.516 3.484
12 O -0.577 6.577
13 C -0.090 4.090
14 C -0.027 4.027
15 C -0.180 4.180
16 C -0.075 4.075
17 C -0.248 4.248
18 C 0.110 3.890
19 O -0.234 6.234
20 C -0.413 4.413
21 H 0.100 0.900
22 C -0.025 4.025
23 N -0.922 5.922
24 Si 1.019 2.981
25 H -0.252 1.252
26 H -0.265 1.265
27 H -0.269 1.269
28 C -0.192 4.192
29 H 0.065 0.935
30 H 0.075 0.925
31 H 0.062 0.938
32 H 0.065 0.935
33 H 0.108 0.892
34 H 0.105 0.895
35 H 0.095 0.905
36 H 0.391 0.609
37 H 0.065 0.935
38 H 0.067 0.933
39 H 0.418 0.582
40 H 0.148 0.852
41 H 0.125 0.875
42 H 0.148 0.852
43 H 0.144 0.856
44 H 0.116 0.884
45 H 0.272 0.728
46 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.966 -15.724 -11.918 26.021
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C 0.019 3.981
3 H 0.102 0.898
4 O -0.307 6.307
5 C -0.038 4.038
6 C -0.220 4.220
7 C 0.066 3.934
8 O -0.355 6.355
9 C -0.020 4.020
10 N -0.369 5.369
11 C 0.304 3.696
12 O -0.455 6.455
13 C -0.129 4.129
14 C -0.027 4.027
15 C -0.199 4.199
16 C -0.093 4.093
17 C -0.267 4.267
18 C 0.060 3.940
19 O -0.141 6.141
20 C -0.489 4.489
21 H 0.117 0.883
22 C -0.222 4.222
23 N -0.561 5.561
24 Si 0.838 3.162
25 H -0.176 1.176
26 H -0.190 1.190
27 H -0.194 1.194
28 C -0.211 4.211
29 H 0.084 0.916
30 H 0.094 0.906
31 H 0.081 0.919
32 H 0.083 0.917
33 H 0.126 0.874
34 H 0.124 0.876
35 H 0.114 0.886
36 H 0.241 0.759
37 H 0.084 0.916
38 H 0.086 0.914
39 H 0.256 0.744
40 H 0.165 0.835
41 H 0.143 0.857
42 H 0.166 0.834
43 H 0.162 0.838
44 H 0.134 0.866
45 H 0.081 0.919
46 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges -17.203 -14.606 -12.736 25.912
hybrid contribution 1.228 0.471 0.992 1.647
sum -15.975 -14.135 -11.744 24.350
Atomic orbital electron populations
1.21560 0.91895 1.03266 1.02428 1.23108 0.96985 0.94808 0.83155
0.89772 1.89177 1.28322 1.74861 1.38320 1.23530 0.83818 1.01051
0.95435 1.23737 0.98317 1.03068 0.96879 1.22621 0.88775 0.89269
0.92727 1.86613 1.40993 1.51724 1.56220 1.21853 0.97130 0.94984
0.88035 1.45702 1.59119 1.12971 1.19157 1.20964 0.78146 0.87384
0.83147 1.90781 1.57647 1.17610 1.79480 1.20713 1.03251 0.97281
0.91667 1.19215 0.91840 0.96130 0.95539 1.20988 1.00634 1.02763
0.95468 1.21134 0.94498 0.94718 0.98955 1.21294 0.97564 1.07143
1.00722 1.19900 0.86092 0.92992 0.94967 1.83931 1.30122 1.49126
1.50966 1.21849 1.07422 1.14625 1.04990 0.88313 1.26598 0.94457
1.00224 1.00891 1.70190 1.10907 1.41294 1.33677 0.84524 0.79183
0.76141 0.76305 1.17574 1.19014 1.19442 1.20237 0.99502 1.02445
0.98936 0.91580 0.90632 0.91873 0.91661 0.87360 0.87623 0.88642
0.75883 0.91633 0.91433 0.74435 0.83461 0.85710 0.83411 0.83845
0.86639 0.91861 0.87417
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.08 9.06 71.98 0.65 -1.43 16
2 C 0.08 1.24 3.46 31.21 0.11 1.35 16
3 H 0.08 1.30 7.78 -2.39 -0.02 1.28 16
4 O -0.39 -7.17 11.34 -148.98 -1.69 -8.86 16
5 C 0.04 0.48 7.63 72.48 0.55 1.03 16
6 C -0.18 -1.71 5.84 31.61 0.18 -1.53 16
7 C 0.11 1.35 0.99 -9.67 -0.01 1.34 16
8 O -0.55 -6.33 11.39 -148.98 -1.70 -8.02 16
9 C 0.10 1.69 4.74 86.38 0.41 2.10 16
10 N -0.71 -10.03 4.84 -463.05 -2.24 -12.27 16
11 C 0.52 12.30 7.82 87.66 0.69 12.99 16
12 O -0.58 -21.17 16.03 -3.03 -0.05 -21.22 16
13 C -0.09 -1.82 5.83 29.10 0.17 -1.65 16
14 C -0.03 -0.89 4.37 -19.88 -0.09 -0.97 16
15 C -0.18 -5.72 9.70 22.30 0.22 -5.50 16
16 C -0.08 -2.71 10.04 22.25 0.22 -2.48 16
17 C -0.25 -11.40 9.17 22.39 0.21 -11.19 16
18 C 0.11 5.76 6.65 22.58 0.15 5.91 16
19 O -0.23 -14.65 9.76 -22.76 -0.22 -14.88 16
20 C -0.41 -24.91 9.49 67.92 0.64 -24.27 16
21 H 0.10 5.52 5.20 -2.91 -0.02 5.51 16
22 C -0.02 -1.44 5.49 84.83 0.47 -0.98 16
23 N -0.92 -57.91 13.67 21.61 0.30 -57.62 16
24 Si 1.02 44.11 29.55 68.60 2.03 46.14 16
25 H -0.25 -10.13 7.11 99.48 0.71 -9.43 16
26 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16
27 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16
28 C -0.19 -8.44 9.64 22.39 0.22 -8.23 16
29 H 0.07 1.13 7.35 -2.39 -0.02 1.11 16
30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16
31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16
32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16
33 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16
34 H 0.11 0.66 8.00 -2.39 -0.02 0.64 16
35 H 0.10 0.82 7.29 -2.38 -0.02 0.80 16
36 H 0.39 1.56 8.43 -74.06 -0.62 0.93 16
37 H 0.07 1.28 8.00 -2.39 -0.02 1.26 16
38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16
39 H 0.42 2.33 7.39 -92.71 -0.69 1.64 16
40 H 0.15 1.63 8.09 -2.39 -0.02 1.61 16
41 H 0.12 1.98 8.08 -2.39 -0.02 1.96 16
42 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16
43 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16
44 H 0.12 5.40 5.64 -2.91 -0.02 5.39 16
45 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16
46 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16
Total: -1.00 -87.16 382.29 0.92 -86.24
By element:
Atomic # 1 Polarization: 24.28 SS G_CDS: -0.29 Total: 24.00 kcal
Atomic # 6 Polarization: -38.29 SS G_CDS: 4.79 Total: -33.50 kcal
Atomic # 7 Polarization: -67.94 SS G_CDS: -1.95 Total: -69.89 kcal
Atomic # 8 Polarization: -49.32 SS G_CDS: -3.66 Total: -52.98 kcal
Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal
Total: -87.16 0.92 -86.24 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000279467173.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -75.333 kcal
(2) G-P(sol) polarization free energy of solvation -87.157 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.490 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.921 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.235 kcal
(6) G-S(sol) free energy of system = (1) + (5) -161.569 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds