Wall clock time and date at job start Tue Mar 31 2020 19:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.98880 * 2 1 4 4 O 1.43745 * 109.87606 * 238.92127 * 2 1 3 5 5 C 1.44380 * 106.97274 * 214.05624 * 4 2 1 6 6 C 1.54998 * 103.49040 * 40.06155 * 5 4 2 7 7 C 1.54093 * 109.88060 * 121.08737 * 2 1 3 8 8 O 1.42905 * 110.48982 * 240.26320 * 7 2 1 9 9 C 1.52996 * 110.48880 * 2.77874 * 7 2 1 10 10 N 1.46504 * 109.47171 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99957 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00245 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99738 * 179.97438 * 11 10 9 14 14 C 1.50704 * 109.47022 * 180.02562 * 13 11 10 15 15 C 1.38323 * 119.96219 * 269.72591 * 14 13 11 16 16 C 1.38288 * 120.13335 * 179.76506 * 15 14 13 17 17 C 1.38123 * 120.06836 * 0.51009 * 16 15 14 18 18 C 1.38853 * 119.92788 * 359.74334 * 17 16 15 19 19 O 1.35753 * 120.06379 * 180.02562 * 18 17 16 20 20 C 1.34833 * 117.00328 * 354.44694 * 19 18 17 21 21 H 1.08000 * 119.99539 * 5.05020 * 20 19 18 22 22 C 1.38652 * 120.00172 * 185.05822 * 20 19 18 23 23 N 1.31560 * 119.99958 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00052 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46801 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47258 * 119.99527 * 24 22 20 27 27 H 1.48499 * 109.47155 * 239.99888 * 24 22 20 28 28 C 1.38079 * 119.96652 * 89.99918 * 14 13 11 29 29 H 1.09000 * 109.47092 * 179.62969 * 1 2 3 30 30 H 1.08999 * 109.46826 * 299.62520 * 1 2 3 31 31 H 1.08998 * 109.47250 * 59.62749 * 1 2 3 32 32 H 1.08997 * 110.61949 * 158.56102 * 5 4 2 33 33 H 1.08998 * 110.62300 * 281.56037 * 5 4 2 34 34 H 1.08997 * 110.91166 * 204.77225 * 6 5 4 35 35 H 1.09000 * 110.93530 * 81.18651 * 6 5 4 36 36 H 0.96695 * 114.00061 * 180.02562 * 8 7 2 37 37 H 1.08999 * 109.47472 * 299.99706 * 9 7 2 38 38 H 1.09004 * 109.47329 * 60.00113 * 9 7 2 39 39 H 0.96999 * 119.99906 * 0.02562 * 10 9 7 40 40 H 1.08994 * 109.47437 * 299.99918 * 13 11 10 41 41 H 1.08998 * 109.47228 * 60.00402 * 13 11 10 42 42 H 1.07995 * 119.93752 * 0.02562 * 15 14 13 43 43 H 1.08000 * 119.96054 * 180.28060 * 16 15 14 44 44 H 1.07996 * 120.02895 * 179.72531 * 17 16 15 45 45 H 0.96995 * 119.99728 * 180.02562 * 23 22 20 46 46 H 1.07996 * 120.03052 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0187 -0.6978 -1.1578 5 6 3.2379 -1.3640 -0.7649 6 6 2.9196 -1.8914 0.6574 7 6 2.0540 -0.7482 1.2410 8 8 2.8485 0.1209 2.0506 9 6 0.8899 -1.3191 2.0533 10 7 1.4125 -2.0253 3.2257 11 6 0.5637 -2.6127 4.0923 12 8 -0.6327 -2.5571 3.9013 13 6 1.1014 -3.3395 5.2980 14 6 -0.0453 -3.9018 6.0982 15 6 -0.6210 -3.1472 7.1044 16 6 -1.6765 -3.6578 7.8376 17 6 -2.1522 -4.9275 7.5741 18 6 -1.5728 -5.6893 6.5682 19 8 -2.0384 -6.9373 6.3065 20 6 -2.9870 -7.4226 7.1327 21 1 -3.4006 -6.7945 7.9078 22 6 -3.4311 -8.7280 6.9875 23 7 -2.9274 -9.4930 6.0431 24 14 -4.7448 -9.4005 8.1327 25 1 -5.1430 -8.3478 9.1014 26 1 -5.9286 -9.8160 7.3382 27 1 -4.2067 -10.5724 8.8692 28 6 -0.5163 -5.1717 5.8299 29 1 -0.3633 -1.0276 -0.0066 30 1 -0.3633 0.5080 0.8933 31 1 -0.3634 0.5196 -0.8866 32 1 3.4585 -2.1905 -1.4403 33 1 4.0685 -0.6587 -0.7358 34 1 3.8332 -2.0224 1.2372 35 1 2.3543 -2.8221 0.6102 36 1 3.2047 -0.2987 2.8457 37 1 0.2403 -0.5063 2.3780 38 1 0.3214 -2.0137 1.4348 39 1 2.3693 -2.0694 3.3786 40 1 1.7500 -4.1528 4.9727 41 1 1.6707 -2.6458 5.9165 42 1 -0.2483 -2.1557 7.3150 43 1 -2.1270 -3.0644 8.6196 44 1 -2.9736 -5.3272 8.1501 45 1 -3.2384 -10.4061 5.9413 46 1 -0.0631 -5.7622 5.0474 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279467178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:05 Heat of formation + Delta-G solvation = -129.807919 kcal Electronic energy + Delta-G solvation = -28446.845445 eV Core-core repulsion = 24302.470066 eV Total energy + Delta-G solvation = -4144.375379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.94535 -39.65639 -38.73311 -37.02313 -36.41969 -34.48631 -32.69152 -32.32678 -31.95401 -31.42855 -29.22273 -27.89638 -26.37676 -25.30818 -24.91132 -22.95529 -21.70197 -21.27956 -20.46527 -20.18673 -18.11652 -17.57424 -17.27693 -16.92803 -16.52150 -15.96059 -15.87680 -15.66201 -15.52671 -15.02663 -14.63273 -14.37422 -14.02938 -13.92392 -13.86211 -13.47006 -13.38738 -13.17502 -12.90055 -12.67899 -12.53794 -12.40827 -12.25051 -12.00116 -11.80622 -11.68110 -11.51090 -11.26236 -11.05301 -10.83009 -10.75633 -10.60018 -10.54074 -10.40949 -10.14557 -9.80740 -9.30774 -9.27551 -8.81253 -8.04664 -7.19121 -6.41488 -4.00398 2.09774 2.41554 2.69479 2.98670 3.14981 3.15733 3.21404 3.34994 3.44740 3.93123 3.99293 4.03494 4.38056 4.54593 4.61675 4.74252 4.85805 4.91314 5.00834 5.07878 5.12244 5.14019 5.19816 5.20315 5.30984 5.35563 5.44865 5.48369 5.55701 5.63698 5.66468 5.76667 5.85717 5.95198 6.16265 6.20189 6.36075 6.39206 6.67922 6.94025 7.01047 7.10396 7.28017 7.28396 7.39857 7.47015 7.85379 8.03868 8.21735 9.04518 9.75445 10.76935 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019314 B = 0.002144 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.378513 B =13054.923327 C =13713.381657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.092 3.908 3 H 0.085 0.915 4 O -0.368 6.368 5 C 0.050 3.950 6 C -0.184 4.184 7 C 0.093 3.907 8 O -0.546 6.546 9 C 0.099 3.901 10 N -0.742 5.742 11 C 0.515 3.485 12 O -0.513 6.513 13 C -0.093 4.093 14 C -0.034 4.034 15 C -0.197 4.197 16 C -0.075 4.075 17 C -0.230 4.230 18 C 0.155 3.845 19 O -0.180 6.180 20 C -0.390 4.390 21 H 0.092 0.908 22 C 0.038 3.962 23 N -0.864 5.864 24 Si 0.941 3.059 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.276 1.276 28 C -0.174 4.174 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.378 0.622 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.393 0.607 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.126 0.874 45 H 0.269 0.731 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.382 17.481 -8.228 24.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 H 0.102 0.898 4 O -0.287 6.287 5 C -0.026 4.026 6 C -0.222 4.222 7 C 0.051 3.949 8 O -0.352 6.352 9 C -0.024 4.024 10 N -0.398 5.398 11 C 0.302 3.698 12 O -0.386 6.386 13 C -0.133 4.133 14 C -0.035 4.035 15 C -0.216 4.216 16 C -0.093 4.093 17 C -0.249 4.249 18 C 0.101 3.899 19 O -0.084 6.084 20 C -0.466 4.466 21 H 0.109 0.891 22 C -0.166 4.166 23 N -0.500 5.500 24 Si 0.766 3.234 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.202 1.202 28 C -0.194 4.194 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.227 0.773 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.227 0.773 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.144 0.856 45 H 0.078 0.922 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 13.233 17.532 -9.306 23.856 hybrid contribution 0.089 -0.771 1.308 1.521 sum 13.323 16.761 -7.999 22.856 Atomic orbital electron populations 1.22090 0.92537 1.03802 1.03254 1.22541 0.95428 0.96212 0.82486 0.89761 1.88953 1.39745 1.67753 1.32279 1.23500 0.87802 0.96562 0.94782 1.23873 1.01063 0.99300 0.97980 1.22839 0.90339 0.89888 0.91827 1.86585 1.69480 1.40203 1.38953 1.22159 0.95784 0.97310 0.87184 1.46015 1.09824 1.57792 1.26133 1.20793 0.86804 0.78463 0.83770 1.90778 1.15343 1.58006 1.74435 1.20588 0.98090 1.00447 0.94145 1.18638 0.95828 0.93463 0.95580 1.20346 1.01110 0.99530 1.00570 1.20685 0.95648 0.94832 0.98130 1.21182 1.04812 0.96006 1.02950 1.19273 0.91678 0.86474 0.92450 1.83977 1.50670 1.24231 1.49492 1.21368 1.15524 0.96791 1.12949 0.89066 1.25279 0.98672 0.95006 0.97621 1.70051 1.41252 1.07986 1.30694 0.85652 0.79474 0.79097 0.79225 1.19121 1.20174 1.20183 1.19934 0.99544 0.96290 1.03603 0.91007 0.90412 0.91143 0.88530 0.91699 0.89291 0.88992 0.77348 0.90037 0.89833 0.77318 0.88226 0.88333 0.87952 0.87469 0.85599 0.92152 0.86876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 8.40 37.16 0.31 -0.99 16 2 C 0.09 0.79 3.88 -26.16 -0.10 0.69 16 3 H 0.08 0.74 7.97 -51.93 -0.41 0.32 16 4 O -0.37 -3.58 11.19 -35.23 -0.39 -3.97 16 5 C 0.05 0.35 7.72 38.21 0.29 0.65 16 6 C -0.18 -1.16 6.08 -24.72 -0.15 -1.31 16 7 C 0.09 0.69 1.07 -89.10 -0.10 0.59 16 8 O -0.55 -3.86 12.98 -35.23 -0.46 -4.32 16 9 C 0.10 0.92 3.53 -4.04 -0.01 0.90 16 10 N -0.74 -6.55 5.16 -60.29 -0.31 -6.86 16 11 C 0.52 6.93 7.82 -10.98 -0.09 6.85 16 12 O -0.51 -9.65 16.03 5.56 0.09 -9.56 16 13 C -0.09 -1.15 5.83 -29.03 -0.17 -1.32 16 14 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 15 C -0.20 -3.51 9.70 -39.53 -0.38 -3.89 16 16 C -0.07 -1.43 10.04 -39.61 -0.40 -1.83 16 17 C -0.23 -5.20 9.17 -39.40 -0.36 -5.57 16 18 C 0.15 3.87 6.65 -39.11 -0.26 3.61 16 19 O -0.18 -5.27 9.76 0.03 0.00 -5.27 16 20 C -0.39 -11.13 9.49 30.89 0.29 -10.83 16 21 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 22 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 23 N -0.86 -25.72 13.67 55.48 0.76 -24.97 16 24 Si 0.94 20.86 29.55 -169.99 -5.02 15.84 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 26 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 27 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 28 C -0.17 -3.79 9.64 -39.40 -0.38 -4.17 16 29 H 0.07 0.63 6.67 -51.93 -0.35 0.29 16 30 H 0.08 0.59 6.87 -51.93 -0.36 0.24 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.39 8.09 -51.93 -0.42 -0.03 16 35 H 0.09 0.65 7.85 -51.93 -0.41 0.24 16 36 H 0.38 1.43 7.76 45.56 0.35 1.78 16 37 H 0.08 0.84 6.74 -51.93 -0.35 0.49 16 38 H 0.08 0.89 6.78 -51.93 -0.35 0.54 16 39 H 0.39 2.02 7.24 -40.82 -0.30 1.73 16 40 H 0.10 1.03 8.08 -51.93 -0.42 0.61 16 41 H 0.10 0.90 8.08 -51.93 -0.42 0.48 16 42 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 43 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 44 H 0.13 2.84 5.64 -52.49 -0.30 2.54 16 45 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 378.43 15.07 5.70 5.70 Total: -1.00 -36.31 378.43 -7.36 -43.66 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.67 Total: 6.49 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -2.05 Total: -16.75 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: 0.45 Total: -31.83 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.76 Total: -23.12 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.31 -7.36 -43.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279467178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.145 kcal (2) G-P(sol) polarization free energy of solvation -36.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds