Wall clock time and date at job start Tue Mar 31 2020 19:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.98880 * 2 1 4 4 O 1.43745 * 109.87606 * 238.92127 * 2 1 3 5 5 C 1.44380 * 106.97274 * 214.05624 * 4 2 1 6 6 C 1.54998 * 103.49040 * 40.06155 * 5 4 2 7 7 C 1.54093 * 109.88060 * 121.08737 * 2 1 3 8 8 O 1.42905 * 110.48982 * 240.26320 * 7 2 1 9 9 C 1.52996 * 110.48880 * 2.77874 * 7 2 1 10 10 N 1.46504 * 109.47171 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99957 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00245 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99738 * 179.97438 * 11 10 9 14 14 C 1.50704 * 109.47022 * 180.02562 * 13 11 10 15 15 C 1.38323 * 119.96219 * 269.72591 * 14 13 11 16 16 C 1.38288 * 120.13335 * 179.76506 * 15 14 13 17 17 C 1.38123 * 120.06836 * 0.51009 * 16 15 14 18 18 C 1.38853 * 119.92788 * 359.74334 * 17 16 15 19 19 O 1.35753 * 120.06379 * 180.02562 * 18 17 16 20 20 C 1.34833 * 117.00328 * 354.44694 * 19 18 17 21 21 H 1.08000 * 119.99539 * 5.05020 * 20 19 18 22 22 C 1.38652 * 120.00172 * 185.05822 * 20 19 18 23 23 N 1.31560 * 119.99958 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00052 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46801 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47258 * 119.99527 * 24 22 20 27 27 H 1.48499 * 109.47155 * 239.99888 * 24 22 20 28 28 C 1.38079 * 119.96652 * 89.99918 * 14 13 11 29 29 H 1.09000 * 109.47092 * 179.62969 * 1 2 3 30 30 H 1.08999 * 109.46826 * 299.62520 * 1 2 3 31 31 H 1.08998 * 109.47250 * 59.62749 * 1 2 3 32 32 H 1.08997 * 110.61949 * 158.56102 * 5 4 2 33 33 H 1.08998 * 110.62300 * 281.56037 * 5 4 2 34 34 H 1.08997 * 110.91166 * 204.77225 * 6 5 4 35 35 H 1.09000 * 110.93530 * 81.18651 * 6 5 4 36 36 H 0.96695 * 114.00061 * 180.02562 * 8 7 2 37 37 H 1.08999 * 109.47472 * 299.99706 * 9 7 2 38 38 H 1.09004 * 109.47329 * 60.00113 * 9 7 2 39 39 H 0.96999 * 119.99906 * 0.02562 * 10 9 7 40 40 H 1.08994 * 109.47437 * 299.99918 * 13 11 10 41 41 H 1.08998 * 109.47228 * 60.00402 * 13 11 10 42 42 H 1.07995 * 119.93752 * 0.02562 * 15 14 13 43 43 H 1.08000 * 119.96054 * 180.28060 * 16 15 14 44 44 H 1.07996 * 120.02895 * 179.72531 * 17 16 15 45 45 H 0.96995 * 119.99728 * 180.02562 * 23 22 20 46 46 H 1.07996 * 120.03052 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0187 -0.6978 -1.1578 5 6 3.2379 -1.3640 -0.7649 6 6 2.9196 -1.8914 0.6574 7 6 2.0540 -0.7482 1.2410 8 8 2.8485 0.1209 2.0506 9 6 0.8899 -1.3191 2.0533 10 7 1.4125 -2.0253 3.2257 11 6 0.5637 -2.6127 4.0923 12 8 -0.6327 -2.5571 3.9013 13 6 1.1014 -3.3395 5.2980 14 6 -0.0453 -3.9018 6.0982 15 6 -0.6210 -3.1472 7.1044 16 6 -1.6765 -3.6578 7.8376 17 6 -2.1522 -4.9275 7.5741 18 6 -1.5728 -5.6893 6.5682 19 8 -2.0384 -6.9373 6.3065 20 6 -2.9870 -7.4226 7.1327 21 1 -3.4006 -6.7945 7.9078 22 6 -3.4311 -8.7280 6.9875 23 7 -2.9274 -9.4930 6.0431 24 14 -4.7448 -9.4005 8.1327 25 1 -5.1430 -8.3478 9.1014 26 1 -5.9286 -9.8160 7.3382 27 1 -4.2067 -10.5724 8.8692 28 6 -0.5163 -5.1717 5.8299 29 1 -0.3633 -1.0276 -0.0066 30 1 -0.3633 0.5080 0.8933 31 1 -0.3634 0.5196 -0.8866 32 1 3.4585 -2.1905 -1.4403 33 1 4.0685 -0.6587 -0.7358 34 1 3.8332 -2.0224 1.2372 35 1 2.3543 -2.8221 0.6102 36 1 3.2047 -0.2987 2.8457 37 1 0.2403 -0.5063 2.3780 38 1 0.3214 -2.0137 1.4348 39 1 2.3693 -2.0694 3.3786 40 1 1.7500 -4.1528 4.9727 41 1 1.6707 -2.6458 5.9165 42 1 -0.2483 -2.1557 7.3150 43 1 -2.1270 -3.0644 8.6196 44 1 -2.9736 -5.3272 8.1501 45 1 -3.2384 -10.4061 5.9413 46 1 -0.0631 -5.7622 5.0474 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279467178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:04 Heat of formation + Delta-G solvation = -158.926871 kcal Electronic energy + Delta-G solvation = -28448.108137 eV Core-core repulsion = 24302.470066 eV Total energy + Delta-G solvation = -4145.638071 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.66591 -40.93839 -40.21540 -38.23843 -37.59084 -35.35698 -34.34483 -33.62715 -33.07638 -32.07195 -30.88899 -29.07982 -27.51131 -27.02305 -25.74755 -23.54122 -23.28198 -22.78154 -21.52387 -21.01412 -19.53697 -18.91903 -18.51258 -18.13499 -17.18890 -16.87398 -16.74834 -16.60152 -16.55359 -16.28717 -16.11752 -16.06582 -15.49455 -15.14733 -14.90247 -14.67916 -14.48985 -14.30646 -13.98691 -13.85372 -13.60314 -13.51277 -13.21060 -13.03030 -12.97888 -12.70105 -12.60227 -12.48588 -12.37373 -12.23962 -12.21491 -12.08383 -11.67154 -11.20371 -11.12354 -11.01879 -10.80964 -10.72886 -10.17923 -9.63090 -8.97199 -8.47441 -6.15776 0.52376 0.76532 1.33797 1.42468 1.52476 1.65805 2.08921 2.17438 2.76378 2.84874 2.90066 3.17975 3.34666 3.40353 3.44893 3.77346 3.82075 4.04721 4.10271 4.12737 4.17187 4.25683 4.32857 4.41755 4.45216 4.51920 4.57994 4.60607 4.63277 4.66449 4.74811 4.78682 4.89827 4.94947 4.98622 5.07854 5.13443 5.17639 5.31011 5.34443 5.65886 5.73554 5.76060 5.80319 6.03102 6.24157 6.48389 6.64187 6.97448 7.26864 7.79238 8.76413 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019314 B = 0.002144 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.378513 B =13054.923327 C =13713.381657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.087 3.913 3 H 0.083 0.917 4 O -0.392 6.392 5 C 0.043 3.957 6 C -0.180 4.180 7 C 0.106 3.894 8 O -0.551 6.551 9 C 0.102 3.898 10 N -0.716 5.716 11 C 0.516 3.484 12 O -0.576 6.576 13 C -0.090 4.090 14 C -0.027 4.027 15 C -0.180 4.180 16 C -0.075 4.075 17 C -0.248 4.248 18 C 0.111 3.889 19 O -0.235 6.235 20 C -0.413 4.413 21 H 0.100 0.900 22 C -0.025 4.025 23 N -0.922 5.922 24 Si 1.020 2.980 25 H -0.252 1.252 26 H -0.269 1.269 27 H -0.266 1.266 28 C -0.192 4.192 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.083 0.917 36 H 0.394 0.606 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.416 0.584 40 H 0.124 0.876 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.144 0.856 44 H 0.116 0.884 45 H 0.272 0.728 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.534 20.084 -6.841 26.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 H 0.101 0.899 4 O -0.312 6.312 5 C -0.033 4.033 6 C -0.217 4.217 7 C 0.064 3.936 8 O -0.360 6.360 9 C -0.022 4.022 10 N -0.371 5.371 11 C 0.304 3.696 12 O -0.454 6.454 13 C -0.129 4.129 14 C -0.027 4.027 15 C -0.198 4.198 16 C -0.093 4.093 17 C -0.267 4.267 18 C 0.061 3.939 19 O -0.142 6.142 20 C -0.489 4.489 21 H 0.117 0.883 22 C -0.222 4.222 23 N -0.561 5.561 24 Si 0.839 3.161 25 H -0.176 1.176 26 H -0.194 1.194 27 H -0.191 1.191 28 C -0.212 4.212 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.124 0.876 33 H 0.092 0.908 34 H 0.135 0.865 35 H 0.102 0.898 36 H 0.245 0.755 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.254 0.746 40 H 0.142 0.858 41 H 0.166 0.834 42 H 0.166 0.834 43 H 0.162 0.838 44 H 0.134 0.866 45 H 0.081 0.919 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 15.481 20.198 -7.911 26.650 hybrid contribution -0.361 -1.246 0.818 1.534 sum 15.120 18.952 -7.094 25.261 Atomic orbital electron populations 1.22077 0.92817 1.03143 1.03573 1.22581 0.95365 0.96287 0.82935 0.89872 1.88931 1.40962 1.68160 1.33097 1.23704 0.87144 0.97017 0.95452 1.23872 1.01799 0.98194 0.97859 1.22583 0.89842 0.90051 0.91122 1.86579 1.69207 1.40427 1.39788 1.22095 0.96473 0.96557 0.87044 1.45705 1.10642 1.55937 1.24819 1.20950 0.86191 0.78133 0.84328 1.90777 1.18036 1.60618 1.76003 1.20715 0.96340 1.02105 0.93747 1.19217 0.96504 0.91605 0.95407 1.20993 0.99294 1.00885 0.98651 1.21141 0.95786 0.93489 0.98886 1.21294 1.05046 0.97606 1.02757 1.19897 0.93513 0.85950 0.94574 1.83935 1.52341 1.26628 1.51296 1.21854 1.16003 0.97614 1.13417 0.88294 1.26603 1.01207 0.94913 0.99439 1.70194 1.43867 1.08633 1.33386 0.84518 0.76002 0.78602 0.76987 1.17558 1.19410 1.19057 1.20234 0.99306 0.98196 1.03430 0.92112 0.90055 0.90913 0.87558 0.90772 0.86533 0.89814 0.75499 0.91063 0.91613 0.74623 0.85778 0.83408 0.83361 0.83820 0.86628 0.91862 0.87513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 8.40 71.98 0.60 -2.00 16 2 C 0.09 1.40 3.88 30.96 0.12 1.52 16 3 H 0.08 1.36 7.97 -2.38 -0.02 1.34 16 4 O -0.39 -7.30 11.19 -148.98 -1.67 -8.96 16 5 C 0.04 0.52 7.72 72.67 0.56 1.08 16 6 C -0.18 -1.78 6.08 31.90 0.19 -1.59 16 7 C 0.11 1.35 1.07 -9.81 -0.01 1.33 16 8 O -0.55 -5.91 12.98 -148.98 -1.93 -7.85 16 9 C 0.10 1.73 3.53 86.38 0.30 2.04 16 10 N -0.72 -10.35 5.16 -463.05 -2.39 -12.74 16 11 C 0.52 12.47 7.82 87.66 0.69 13.15 16 12 O -0.58 -21.22 16.03 -3.03 -0.05 -21.27 16 13 C -0.09 -1.84 5.83 29.10 0.17 -1.67 16 14 C -0.03 -0.90 4.37 -19.88 -0.09 -0.98 16 15 C -0.18 -5.73 9.70 22.30 0.22 -5.51 16 16 C -0.08 -2.71 10.04 22.25 0.22 -2.49 16 17 C -0.25 -11.43 9.17 22.39 0.21 -11.22 16 18 C 0.11 5.80 6.65 22.57 0.15 5.95 16 19 O -0.23 -14.75 9.76 -22.80 -0.22 -14.98 16 20 C -0.41 -24.94 9.49 67.92 0.64 -24.29 16 21 H 0.10 5.53 5.20 -2.91 -0.02 5.52 16 22 C -0.02 -1.44 5.49 84.83 0.47 -0.97 16 23 N -0.92 -57.98 13.67 21.61 0.30 -57.68 16 24 Si 1.02 44.08 29.55 68.60 2.03 46.11 16 25 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 26 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 27 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 28 C -0.19 -8.53 9.64 22.39 0.22 -8.31 16 29 H 0.06 1.11 6.67 -2.39 -0.02 1.10 16 30 H 0.08 1.23 6.87 -2.39 -0.02 1.22 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.11 1.04 8.14 -2.39 -0.02 1.03 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.12 0.51 8.09 -2.39 -0.02 0.49 16 35 H 0.08 1.01 7.85 -2.39 -0.02 0.99 16 36 H 0.39 1.17 7.76 -74.06 -0.57 0.59 16 37 H 0.07 1.40 6.74 -2.39 -0.02 1.38 16 38 H 0.07 1.40 6.78 -2.38 -0.02 1.38 16 39 H 0.42 2.30 7.24 -92.71 -0.67 1.63 16 40 H 0.12 2.02 8.08 -2.39 -0.02 2.00 16 41 H 0.15 1.65 8.08 -2.39 -0.02 1.63 16 42 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 43 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 44 H 0.12 5.42 5.64 -2.91 -0.02 5.41 16 45 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 46 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -87.35 378.43 0.51 -86.84 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: -0.22 Total: 24.48 kcal Atomic # 6 Polarization: -38.62 SS G_CDS: 4.66 Total: -33.95 kcal Atomic # 7 Polarization: -68.33 SS G_CDS: -2.09 Total: -70.42 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -3.87 Total: -53.05 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -87.35 0.51 -86.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279467178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.085 kcal (2) G-P(sol) polarization free energy of solvation -87.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds