Wall clock time and date at job start Tue Mar 31 2020 19:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.86719 * 2 1 4 4 O 1.43735 * 110.00322 * 121.08549 * 2 1 3 5 5 C 1.44380 * 106.97602 * 146.00827 * 4 2 1 6 6 C 1.54999 * 103.48654 * 319.93857 * 5 4 2 7 7 C 1.54103 * 109.87448 * 238.99341 * 2 1 3 8 8 O 1.42906 * 110.48659 * 119.58926 * 7 2 1 9 9 C 1.52998 * 110.48984 * 357.07278 * 7 2 1 10 10 N 1.46499 * 109.47019 * 185.00320 * 9 7 2 11 11 C 1.34775 * 120.00019 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00268 * 0.02562 * 11 10 9 13 13 C 1.50707 * 120.00043 * 179.97438 * 11 10 9 14 14 C 1.50693 * 109.46922 * 180.02562 * 13 11 10 15 15 C 1.38327 * 119.97031 * 270.25605 * 14 13 11 16 16 C 1.38273 * 120.13863 * 180.25878 * 15 14 13 17 17 C 1.38120 * 120.07060 * 359.49027 * 16 15 14 18 18 C 1.38854 * 119.93206 * 0.25420 * 17 16 15 19 19 O 1.35751 * 120.07482 * 180.02562 * 18 17 16 20 20 C 1.34834 * 116.99708 * 354.46943 * 19 18 17 21 21 H 1.08003 * 119.99800 * 5.05492 * 20 19 18 22 22 C 1.38650 * 119.99974 * 185.05630 * 20 19 18 23 23 N 1.31560 * 119.99878 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00176 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.46750 * 90.00271 * 24 22 20 26 26 H 1.48497 * 109.46988 * 209.99922 * 24 22 20 27 27 H 1.48498 * 109.47147 * 330.00235 * 24 22 20 28 28 C 1.38085 * 119.96576 * 90.00437 * 14 13 11 29 29 H 1.09000 * 109.47236 * 181.00666 * 1 2 3 30 30 H 1.09004 * 109.47077 * 301.01132 * 1 2 3 31 31 H 1.09006 * 109.47246 * 61.00422 * 1 2 3 32 32 H 1.08996 * 110.62057 * 78.43975 * 5 4 2 33 33 H 1.08999 * 110.62135 * 201.28151 * 5 4 2 34 34 H 1.08999 * 110.90670 * 278.82285 * 6 5 4 35 35 H 1.09002 * 110.90612 * 155.22610 * 6 5 4 36 36 H 0.96694 * 113.99640 * 178.14948 * 8 7 2 37 37 H 1.08990 * 109.47236 * 64.99809 * 9 7 2 38 38 H 1.09003 * 109.46728 * 304.99953 * 9 7 2 39 39 H 0.97003 * 120.00202 * 359.97438 * 10 9 7 40 40 H 1.09002 * 109.46878 * 60.00571 * 13 11 10 41 41 H 1.09001 * 109.47247 * 300.00667 * 13 11 10 42 42 H 1.08003 * 119.92553 * 0.02562 * 15 14 13 43 43 H 1.07998 * 119.96577 * 179.76472 * 16 15 14 44 44 H 1.08003 * 120.03675 * 180.23345 * 17 16 15 45 45 H 0.96997 * 119.99864 * 180.02562 * 23 22 20 46 46 H 1.08004 * 120.03131 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0217 -0.6974 1.1567 5 6 3.2418 -1.3608 0.7619 6 6 2.9226 -1.8882 -0.6602 7 6 2.0539 -0.7466 -1.2422 8 8 2.8456 0.1247 -2.0524 9 6 0.8899 -1.3194 -2.0532 10 7 1.4148 -2.1234 -3.1597 11 6 0.5665 -2.7307 -4.0130 12 8 -0.6313 -2.6112 -3.8651 13 6 1.1064 -3.5572 -5.1517 14 6 -0.0401 -4.1215 -5.9504 15 6 -0.5792 -5.3498 -5.6125 16 6 -1.6277 -5.8733 -6.3463 17 6 -2.1470 -5.1660 -7.4130 18 6 -1.6116 -3.9304 -7.7515 19 8 -2.1201 -3.2325 -8.7990 20 6 -3.0665 -3.8436 -9.5399 21 1 -3.4455 -4.8099 -9.2415 22 6 -3.5531 -3.2314 -10.6848 23 7 -4.4769 -3.8275 -11.4074 24 14 -2.8981 -1.5598 -11.2005 25 1 -1.7270 -1.7416 -12.0953 26 1 -3.9602 -0.8128 -11.9210 27 1 -2.4865 -0.7961 -9.9953 28 6 -0.5549 -3.4096 -7.0157 29 1 -0.3634 -1.0275 0.0181 30 1 -0.3633 0.5295 0.8808 31 1 -0.3634 0.4982 -0.8989 32 1 4.0708 -0.6538 0.7320 33 1 3.4664 -2.1856 1.4382 34 1 2.3591 -2.8200 -0.6122 35 1 3.8358 -2.0171 -1.2413 36 1 3.2244 -0.3010 -2.8335 37 1 0.2877 -0.5028 -2.4511 38 1 0.2725 -1.9461 -1.4097 39 1 2.3728 -2.2186 -3.2783 40 1 1.7092 -4.3737 -4.7540 41 1 1.7233 -2.9301 -5.7953 42 1 -0.1777 -5.9027 -4.7761 43 1 -2.0440 -6.8343 -6.0824 44 1 -2.9685 -5.5738 -7.9835 45 1 -4.8170 -3.3994 -12.2086 46 1 -0.1365 -2.4486 -7.2762 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279467184.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:08 Heat of formation + Delta-G solvation = -128.219324 kcal Electronic energy + Delta-G solvation = -28497.171869 eV Core-core repulsion = 24352.865377 eV Total energy + Delta-G solvation = -4144.306492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.00024 -39.74539 -38.88642 -37.07184 -36.58095 -34.57380 -32.73799 -32.39383 -32.08830 -31.46900 -29.46272 -27.99638 -26.42666 -25.27065 -24.95065 -23.03292 -21.85135 -21.23047 -20.49640 -20.15229 -18.09117 -17.68834 -17.35844 -17.08074 -16.60281 -16.03808 -15.94612 -15.70701 -15.58766 -15.18244 -14.82706 -14.26963 -14.07737 -13.94776 -13.76682 -13.67832 -13.45132 -13.21270 -12.96093 -12.65391 -12.60782 -12.51211 -12.24137 -12.16175 -12.03845 -11.77221 -11.66038 -11.30546 -11.09958 -10.84669 -10.79903 -10.71147 -10.58980 -10.20360 -10.14581 -9.87008 -9.37219 -9.33342 -8.85014 -8.14317 -7.34427 -6.38762 -4.05497 2.00093 2.29727 2.62409 2.93338 3.23784 3.26652 3.28976 3.41620 3.42569 3.87146 3.97911 4.26101 4.31527 4.46063 4.55049 4.67018 4.71327 4.84758 4.88661 4.96236 5.06621 5.08960 5.12926 5.15976 5.22055 5.30227 5.33079 5.36736 5.49533 5.53832 5.59671 5.68456 5.81552 5.84191 6.10978 6.13125 6.26188 6.33455 6.53493 6.79669 6.98777 7.10382 7.21628 7.22157 7.33333 7.62277 7.83075 8.06776 8.14962 8.96718 9.59582 10.69055 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019214 B = 0.002239 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.924910 B =12504.110559 C =13176.618802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.091 3.909 3 H 0.085 0.915 4 O -0.368 6.368 5 C 0.050 3.950 6 C -0.184 4.184 7 C 0.093 3.907 8 O -0.546 6.546 9 C 0.099 3.901 10 N -0.742 5.742 11 C 0.514 3.486 12 O -0.513 6.513 13 C -0.093 4.093 14 C -0.037 4.037 15 C -0.188 4.188 16 C -0.076 4.076 17 C -0.217 4.217 18 C 0.160 3.840 19 O -0.219 6.219 20 C -0.388 4.388 21 H 0.106 0.894 22 C 0.063 3.937 23 N -0.881 5.881 24 Si 0.905 3.095 25 H -0.274 1.274 26 H -0.282 1.282 27 H -0.260 1.260 28 C -0.174 4.174 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.379 0.621 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.394 0.606 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.110 0.890 44 H 0.133 0.867 45 H 0.279 0.721 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.534 3.870 21.673 28.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 H 0.103 0.897 4 O -0.287 6.287 5 C -0.026 4.026 6 C -0.222 4.222 7 C 0.051 3.949 8 O -0.352 6.352 9 C -0.025 4.025 10 N -0.397 5.397 11 C 0.301 3.699 12 O -0.386 6.386 13 C -0.133 4.133 14 C -0.037 4.037 15 C -0.207 4.207 16 C -0.094 4.094 17 C -0.236 4.236 18 C 0.108 3.892 19 O -0.124 6.124 20 C -0.464 4.464 21 H 0.124 0.876 22 C -0.140 4.140 23 N -0.519 5.519 24 Si 0.731 3.269 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.184 1.184 28 C -0.194 4.194 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.228 0.772 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.227 0.773 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.128 0.872 44 H 0.150 0.850 45 H 0.089 0.911 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 17.241 4.635 22.154 28.452 hybrid contribution 0.855 0.066 -1.050 1.356 sum 18.096 4.701 21.104 28.194 Atomic orbital electron populations 1.22097 0.92503 1.03689 1.03385 1.22542 0.95437 0.96289 0.82426 0.89712 1.88947 1.39575 1.67888 1.32327 1.23495 0.87852 0.96619 0.94683 1.23865 1.00978 0.99312 0.98059 1.22829 0.90395 0.89860 0.91816 1.86592 1.68829 1.39417 1.40362 1.22166 0.95795 0.95849 0.88678 1.46026 1.09733 1.53392 1.30571 1.20791 0.86857 0.79508 0.82769 1.90782 1.15233 1.60085 1.72492 1.20587 0.97997 0.99647 0.95041 1.18637 0.95918 0.94519 0.94674 1.20407 1.00972 0.97118 1.02188 1.20736 0.95513 0.98547 0.94628 1.21302 1.04400 0.96754 1.01157 1.19007 0.91539 0.90386 0.88225 1.83570 1.51183 1.41110 1.36561 1.20764 1.14931 1.05363 1.05341 0.87649 1.24457 0.95595 0.99373 0.94611 1.69648 1.27386 1.38899 1.15982 0.86186 0.78573 0.82831 0.79348 1.19924 1.20802 1.18375 1.19937 0.99267 1.01162 0.99000 0.91082 0.91137 0.90323 0.91687 0.88567 0.89069 0.89292 0.77242 0.90006 0.89775 0.77252 0.88280 0.88196 0.87771 0.87164 0.84970 0.91107 0.86848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 8.41 37.16 0.31 -0.93 16 2 C 0.09 0.75 3.87 -26.15 -0.10 0.64 16 3 H 0.09 0.72 7.97 -51.93 -0.41 0.31 16 4 O -0.37 -3.32 11.19 -35.23 -0.39 -3.72 16 5 C 0.05 0.31 7.72 38.21 0.29 0.60 16 6 C -0.18 -0.97 5.81 -24.72 -0.14 -1.12 16 7 C 0.09 0.64 1.07 -89.09 -0.09 0.55 16 8 O -0.55 -3.82 12.98 -35.23 -0.46 -4.28 16 9 C 0.10 0.85 3.55 -4.04 -0.01 0.84 16 10 N -0.74 -6.04 5.13 -60.30 -0.31 -6.35 16 11 C 0.51 6.50 7.82 -10.98 -0.09 6.41 16 12 O -0.51 -9.23 16.03 5.56 0.09 -9.14 16 13 C -0.09 -1.06 5.83 -29.04 -0.17 -1.23 16 14 C -0.04 -0.62 4.37 -104.65 -0.46 -1.08 16 15 C -0.19 -3.21 9.70 -39.54 -0.38 -3.59 16 16 C -0.08 -1.42 10.04 -39.61 -0.40 -1.82 16 17 C -0.22 -4.83 9.17 -39.40 -0.36 -5.19 16 18 C 0.16 3.81 6.65 -39.11 -0.26 3.55 16 19 O -0.22 -5.92 8.59 0.04 0.00 -5.92 16 20 C -0.39 -11.14 9.95 30.88 0.31 -10.84 16 21 H 0.11 3.08 5.44 -52.48 -0.29 2.80 16 22 C 0.06 1.78 5.49 -17.52 -0.10 1.69 16 23 N -0.88 -25.76 13.96 55.48 0.77 -24.98 16 24 Si 0.91 21.99 28.62 -169.99 -4.86 17.13 16 25 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16 28 C -0.17 -3.54 9.65 -39.39 -0.38 -3.92 16 29 H 0.07 0.57 6.58 -51.93 -0.34 0.23 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.59 6.97 -51.93 -0.36 0.23 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.51 7.87 -51.93 -0.41 0.10 16 35 H 0.09 0.29 8.09 -51.93 -0.42 -0.13 16 36 H 0.38 1.41 8.12 45.56 0.37 1.78 16 37 H 0.08 0.84 7.02 -51.93 -0.36 0.48 16 38 H 0.08 0.81 6.53 -51.93 -0.34 0.47 16 39 H 0.39 1.78 7.36 -40.82 -0.30 1.48 16 40 H 0.10 0.83 8.09 -51.93 -0.42 0.41 16 41 H 0.10 0.92 8.08 -51.93 -0.42 0.50 16 42 H 0.10 1.48 8.06 -52.48 -0.42 1.06 16 43 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 44 H 0.13 3.07 5.64 -52.48 -0.30 2.78 16 45 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.11 2.15 8.06 -52.48 -0.42 1.73 16 LS Contribution 377.56 15.07 5.69 5.69 Total: -1.00 -35.26 377.56 -7.17 -42.43 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.67 Total: 4.56 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -2.03 Total: -15.43 kcal Atomic # 7 Polarization: -31.79 SS G_CDS: 0.47 Total: -31.33 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.76 Total: -23.05 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.86 Total: 17.13 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.26 -7.17 -42.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279467184.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.786 kcal (2) G-P(sol) polarization free energy of solvation -35.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds