Wall clock time and date at job start Tue Mar 31 2020 19:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.86719 * 2 1 4 4 O 1.43735 * 110.00322 * 121.08549 * 2 1 3 5 5 C 1.44380 * 106.97602 * 146.00827 * 4 2 1 6 6 C 1.54999 * 103.48654 * 319.93857 * 5 4 2 7 7 C 1.54103 * 109.87448 * 238.99341 * 2 1 3 8 8 O 1.42906 * 110.48659 * 119.58926 * 7 2 1 9 9 C 1.52998 * 110.48984 * 357.07278 * 7 2 1 10 10 N 1.46499 * 109.47019 * 185.00320 * 9 7 2 11 11 C 1.34775 * 120.00019 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00268 * 0.02562 * 11 10 9 13 13 C 1.50707 * 120.00043 * 179.97438 * 11 10 9 14 14 C 1.50693 * 109.46922 * 180.02562 * 13 11 10 15 15 C 1.38327 * 119.97031 * 270.25605 * 14 13 11 16 16 C 1.38273 * 120.13863 * 180.25878 * 15 14 13 17 17 C 1.38120 * 120.07060 * 359.49027 * 16 15 14 18 18 C 1.38854 * 119.93206 * 0.25420 * 17 16 15 19 19 O 1.35751 * 120.07482 * 180.02562 * 18 17 16 20 20 C 1.34834 * 116.99708 * 354.46943 * 19 18 17 21 21 H 1.08003 * 119.99800 * 5.05492 * 20 19 18 22 22 C 1.38650 * 119.99974 * 185.05630 * 20 19 18 23 23 N 1.31560 * 119.99878 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00176 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.46750 * 90.00271 * 24 22 20 26 26 H 1.48497 * 109.46988 * 209.99922 * 24 22 20 27 27 H 1.48498 * 109.47147 * 330.00235 * 24 22 20 28 28 C 1.38085 * 119.96576 * 90.00437 * 14 13 11 29 29 H 1.09000 * 109.47236 * 181.00666 * 1 2 3 30 30 H 1.09004 * 109.47077 * 301.01132 * 1 2 3 31 31 H 1.09006 * 109.47246 * 61.00422 * 1 2 3 32 32 H 1.08996 * 110.62057 * 78.43975 * 5 4 2 33 33 H 1.08999 * 110.62135 * 201.28151 * 5 4 2 34 34 H 1.08999 * 110.90670 * 278.82285 * 6 5 4 35 35 H 1.09002 * 110.90612 * 155.22610 * 6 5 4 36 36 H 0.96694 * 113.99640 * 178.14948 * 8 7 2 37 37 H 1.08990 * 109.47236 * 64.99809 * 9 7 2 38 38 H 1.09003 * 109.46728 * 304.99953 * 9 7 2 39 39 H 0.97003 * 120.00202 * 359.97438 * 10 9 7 40 40 H 1.09002 * 109.46878 * 60.00571 * 13 11 10 41 41 H 1.09001 * 109.47247 * 300.00667 * 13 11 10 42 42 H 1.08003 * 119.92553 * 0.02562 * 15 14 13 43 43 H 1.07998 * 119.96577 * 179.76472 * 16 15 14 44 44 H 1.08003 * 120.03675 * 180.23345 * 17 16 15 45 45 H 0.96997 * 119.99864 * 180.02562 * 23 22 20 46 46 H 1.08004 * 120.03131 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0217 -0.6974 1.1567 5 6 3.2418 -1.3608 0.7619 6 6 2.9226 -1.8882 -0.6602 7 6 2.0539 -0.7466 -1.2422 8 8 2.8456 0.1247 -2.0524 9 6 0.8899 -1.3194 -2.0532 10 7 1.4148 -2.1234 -3.1597 11 6 0.5665 -2.7307 -4.0130 12 8 -0.6313 -2.6112 -3.8651 13 6 1.1064 -3.5572 -5.1517 14 6 -0.0401 -4.1215 -5.9504 15 6 -0.5792 -5.3498 -5.6125 16 6 -1.6277 -5.8733 -6.3463 17 6 -2.1470 -5.1660 -7.4130 18 6 -1.6116 -3.9304 -7.7515 19 8 -2.1201 -3.2325 -8.7990 20 6 -3.0665 -3.8436 -9.5399 21 1 -3.4455 -4.8099 -9.2415 22 6 -3.5531 -3.2314 -10.6848 23 7 -4.4769 -3.8275 -11.4074 24 14 -2.8981 -1.5598 -11.2005 25 1 -1.7270 -1.7416 -12.0953 26 1 -3.9602 -0.8128 -11.9210 27 1 -2.4865 -0.7961 -9.9953 28 6 -0.5549 -3.4096 -7.0157 29 1 -0.3634 -1.0275 0.0181 30 1 -0.3633 0.5295 0.8808 31 1 -0.3634 0.4982 -0.8989 32 1 4.0708 -0.6538 0.7320 33 1 3.4664 -2.1856 1.4382 34 1 2.3591 -2.8200 -0.6122 35 1 3.8358 -2.0171 -1.2413 36 1 3.2244 -0.3010 -2.8335 37 1 0.2877 -0.5028 -2.4511 38 1 0.2725 -1.9461 -1.4097 39 1 2.3728 -2.2186 -3.2783 40 1 1.7092 -4.3737 -4.7540 41 1 1.7233 -2.9301 -5.7953 42 1 -0.1777 -5.9027 -4.7761 43 1 -2.0440 -6.8343 -6.0824 44 1 -2.9685 -5.5738 -7.9835 45 1 -4.8170 -3.3994 -12.2086 46 1 -0.1365 -2.4486 -7.2762 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279467184.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:07 Heat of formation + Delta-G solvation = -156.256362 kcal Electronic energy + Delta-G solvation = -28498.387646 eV Core-core repulsion = 24352.865377 eV Total energy + Delta-G solvation = -4145.522269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.65795 -41.01211 -40.26104 -38.33810 -37.57383 -35.38134 -34.48433 -33.66515 -33.08583 -32.03285 -31.08092 -29.09933 -27.43152 -27.01200 -25.75092 -23.55797 -23.35424 -22.64684 -21.44367 -20.99861 -19.66941 -19.02095 -18.49134 -18.12298 -17.20263 -16.89435 -16.82826 -16.72948 -16.57053 -16.25405 -16.21612 -15.76312 -15.64159 -15.13065 -14.90079 -14.75664 -14.47470 -14.35163 -14.13608 -13.92172 -13.80842 -13.51616 -13.19349 -13.05163 -13.03783 -12.72597 -12.57983 -12.51445 -12.44207 -12.34043 -12.22221 -11.93305 -11.65314 -11.31498 -11.11601 -11.01529 -10.90221 -10.72015 -10.15948 -9.66473 -9.06148 -8.50589 -6.23386 0.48584 0.70624 1.29377 1.33987 1.50743 1.67754 2.10421 2.27411 2.76401 2.78689 2.92245 3.05582 3.14294 3.36405 3.41992 3.75724 3.79054 4.05873 4.08209 4.12020 4.17919 4.25408 4.30864 4.43287 4.44259 4.53437 4.56093 4.61733 4.64777 4.66525 4.71685 4.80845 4.90609 4.96136 4.98508 4.99993 5.17899 5.25183 5.35673 5.39737 5.65170 5.72883 5.76800 5.80721 5.91744 6.25262 6.51103 6.65047 6.83695 7.28889 7.58746 8.61248 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019214 B = 0.002239 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.924910 B =12504.110559 C =13176.618802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.086 3.914 3 H 0.078 0.922 4 O -0.390 6.390 5 C 0.041 3.959 6 C -0.176 4.176 7 C 0.103 3.897 8 O -0.556 6.556 9 C 0.103 3.897 10 N -0.715 5.715 11 C 0.515 3.485 12 O -0.577 6.577 13 C -0.089 4.089 14 C -0.029 4.029 15 C -0.170 4.170 16 C -0.079 4.079 17 C -0.242 4.242 18 C 0.117 3.883 19 O -0.247 6.247 20 C -0.399 4.399 21 H 0.079 0.921 22 C 0.008 3.992 23 N -0.924 5.924 24 Si 0.972 3.028 25 H -0.261 1.261 26 H -0.267 1.267 27 H -0.267 1.267 28 C -0.181 4.181 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.394 0.606 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.417 0.583 40 H 0.146 0.854 41 H 0.130 0.870 42 H 0.149 0.851 43 H 0.139 0.861 44 H 0.105 0.895 45 H 0.285 0.715 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.554 3.880 23.705 32.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 H 0.096 0.904 4 O -0.310 6.310 5 C -0.034 4.034 6 C -0.214 4.214 7 C 0.062 3.938 8 O -0.365 6.365 9 C -0.022 4.022 10 N -0.371 5.371 11 C 0.303 3.697 12 O -0.455 6.455 13 C -0.128 4.128 14 C -0.030 4.030 15 C -0.189 4.189 16 C -0.097 4.097 17 C -0.261 4.261 18 C 0.069 3.931 19 O -0.155 6.155 20 C -0.476 4.476 21 H 0.097 0.903 22 C -0.190 4.190 23 N -0.565 5.565 24 Si 0.794 3.206 25 H -0.186 1.186 26 H -0.192 1.192 27 H -0.191 1.191 28 C -0.200 4.200 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.128 0.872 34 H 0.110 0.890 35 H 0.135 0.865 36 H 0.245 0.755 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.254 0.746 40 H 0.164 0.836 41 H 0.148 0.852 42 H 0.167 0.833 43 H 0.157 0.843 44 H 0.123 0.877 45 H 0.094 0.906 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 21.353 4.624 24.222 32.619 hybrid contribution -0.218 -0.064 -1.354 1.373 sum 21.135 4.560 22.867 31.470 Atomic orbital electron populations 1.22074 0.92802 1.03331 1.03369 1.22550 0.95359 0.96193 0.83116 0.90429 1.88926 1.40847 1.68256 1.32976 1.23722 0.86983 0.97080 0.95660 1.23860 1.01701 0.98224 0.97591 1.22622 0.90041 0.90196 0.90990 1.86585 1.68715 1.39989 1.41199 1.22083 0.96394 0.95103 0.88591 1.45719 1.10576 1.51608 1.29159 1.20976 0.86220 0.79332 0.83170 1.90785 1.17931 1.62576 1.74187 1.20717 0.96211 1.01472 0.94411 1.19248 0.96518 0.93904 0.93287 1.21024 0.99004 0.96979 1.01846 1.21113 0.95864 0.99413 0.93344 1.21323 1.04653 0.97298 1.02837 1.19620 0.93434 0.91554 0.88525 1.83506 1.51903 1.41921 1.38177 1.20707 1.15824 1.04856 1.06196 0.90335 1.25297 0.95938 1.03209 0.94541 1.69733 1.29037 1.40792 1.16933 0.85200 0.78600 0.78072 0.78712 1.18592 1.19155 1.19129 1.20301 0.98332 1.01864 0.99529 0.91562 0.91019 0.90531 0.91212 0.87177 0.88987 0.86455 0.75478 0.91978 0.90708 0.74554 0.83584 0.85167 0.83299 0.84316 0.87671 0.90575 0.85940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 8.41 71.98 0.61 -1.83 16 2 C 0.09 1.31 3.87 30.97 0.12 1.43 16 3 H 0.08 1.27 7.97 -2.39 -0.02 1.25 16 4 O -0.39 -6.50 11.19 -148.98 -1.67 -8.16 16 5 C 0.04 0.40 7.72 72.67 0.56 0.96 16 6 C -0.18 -1.19 5.81 31.89 0.19 -1.00 16 7 C 0.10 1.17 1.07 -9.80 -0.01 1.16 16 8 O -0.56 -6.05 12.98 -148.98 -1.93 -7.99 16 9 C 0.10 1.56 3.55 86.38 0.31 1.86 16 10 N -0.72 -8.76 5.13 -463.07 -2.38 -11.13 16 11 C 0.52 11.08 7.82 87.66 0.69 11.77 16 12 O -0.58 -19.77 16.03 -3.03 -0.05 -19.82 16 13 C -0.09 -1.54 5.83 29.10 0.17 -1.37 16 14 C -0.03 -0.88 4.37 -19.88 -0.09 -0.97 16 15 C -0.17 -5.16 9.70 22.30 0.22 -4.94 16 16 C -0.08 -2.87 10.04 22.25 0.22 -2.64 16 17 C -0.24 -11.24 9.17 22.39 0.21 -11.03 16 18 C 0.12 5.78 6.65 22.58 0.15 5.93 16 19 O -0.25 -14.04 8.59 -22.79 -0.20 -14.23 16 20 C -0.40 -24.43 9.95 67.92 0.68 -23.75 16 21 H 0.08 5.04 5.44 -2.91 -0.02 5.03 16 22 C 0.01 0.49 5.49 84.83 0.47 0.96 16 23 N -0.92 -56.50 13.96 21.61 0.30 -56.19 16 24 Si 0.97 46.68 28.62 68.60 1.96 48.64 16 25 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 28 C -0.18 -7.20 9.65 22.39 0.22 -6.98 16 29 H 0.07 1.06 6.58 -2.39 -0.02 1.05 16 30 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.08 1.17 6.97 -2.38 -0.02 1.16 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.09 0.66 7.87 -2.39 -0.02 0.64 16 35 H 0.12 0.14 8.09 -2.39 -0.02 0.12 16 36 H 0.39 1.27 8.12 -74.06 -0.60 0.66 16 37 H 0.06 1.23 7.02 -2.39 -0.02 1.21 16 38 H 0.07 1.33 6.53 -2.39 -0.02 1.32 16 39 H 0.42 1.41 7.36 -92.71 -0.68 0.73 16 40 H 0.15 1.28 8.09 -2.39 -0.02 1.26 16 41 H 0.13 1.59 8.08 -2.39 -0.02 1.57 16 42 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 43 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 44 H 0.11 5.36 5.64 -2.91 -0.02 5.34 16 45 H 0.28 15.91 8.31 -92.71 -0.77 15.14 16 46 H 0.12 4.53 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -83.83 377.56 0.48 -83.35 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -0.25 Total: 15.99 kcal Atomic # 6 Polarization: -35.15 SS G_CDS: 4.69 Total: -30.46 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: -2.07 Total: -67.33 kcal Atomic # 8 Polarization: -46.35 SS G_CDS: -3.85 Total: -50.20 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 1.96 Total: 48.64 kcal Total: -83.83 0.48 -83.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279467184.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.903 kcal (2) G-P(sol) polarization free energy of solvation -83.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds