Wall clock time and date at job start Tue Mar 31 2020 19:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.87130 * 2 1 4 4 O 1.43748 * 109.87879 * 238.83766 * 2 1 3 5 5 C 1.44379 * 106.97342 * 267.09017 * 4 2 1 6 6 C 1.55219 * 103.57094 * 320.01251 * 5 4 2 7 7 C 1.54098 * 109.87747 * 121.00853 * 2 1 3 8 8 O 1.42903 * 110.48923 * 358.58307 * 7 2 1 9 9 C 1.53003 * 110.48687 * 236.06924 * 7 2 1 10 10 N 1.46503 * 109.47219 * 186.84299 * 9 7 2 11 11 C 1.34768 * 120.00207 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00141 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00358 * 180.02562 * 11 10 9 14 14 C 1.50701 * 109.47082 * 180.02562 * 13 11 10 15 15 C 1.38307 * 119.92751 * 269.72272 * 14 13 11 16 16 C 1.38105 * 120.06147 * 179.73104 * 15 14 13 17 17 C 1.38872 * 119.93430 * 0.56469 * 16 15 14 18 18 O 1.35750 * 120.06955 * 179.68276 * 17 16 15 19 19 C 1.34838 * 116.99807 * 174.49013 * 18 17 16 20 20 H 1.07994 * 119.99916 * 5.06161 * 19 18 17 21 21 C 1.38659 * 119.99657 * 185.05899 * 19 18 17 22 22 N 1.31560 * 120.00104 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99599 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46912 * 90.00267 * 23 21 19 25 25 H 1.48504 * 109.46679 * 209.99903 * 23 21 19 26 26 H 1.48496 * 109.47497 * 329.99962 * 23 21 19 27 27 C 1.38887 * 119.86270 * 359.71205 * 17 16 15 28 28 C 1.38093 * 119.92815 * 359.97438 * 27 17 16 29 29 H 1.09001 * 109.47042 * 298.99739 * 1 2 3 30 30 H 1.09000 * 109.47312 * 58.99433 * 1 2 3 31 31 H 1.08999 * 109.47363 * 178.99258 * 1 2 3 32 32 H 1.09004 * 110.62074 * 78.44245 * 5 4 2 33 33 H 1.09006 * 110.61700 * 201.27641 * 5 4 2 34 34 H 1.09009 * 110.89111 * 278.75095 * 6 5 4 35 35 H 1.08995 * 111.02603 * 155.07237 * 6 5 4 36 36 H 0.96699 * 113.99799 * 178.16033 * 8 7 2 37 37 H 1.08996 * 109.46773 * 66.84526 * 9 7 2 38 38 H 1.08994 * 109.47004 * 306.84547 * 9 7 2 39 39 H 0.97000 * 119.99962 * 359.97438 * 10 9 7 40 40 H 1.09004 * 109.47209 * 300.00099 * 13 11 10 41 41 H 1.08996 * 109.47032 * 60.00376 * 13 11 10 42 42 H 1.07994 * 119.96598 * 359.97438 * 15 14 13 43 43 H 1.07999 * 120.02925 * 180.28229 * 16 15 14 44 44 H 0.96992 * 120.00155 * 180.02562 * 22 21 19 45 45 H 1.08003 * 120.03351 * 179.97438 * 27 17 16 46 46 H 1.07999 * 119.96394 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6995 -1.1568 5 6 2.2280 -2.0724 -0.7619 6 6 2.8316 -1.9536 0.6632 7 6 2.0539 -0.7466 1.2421 8 8 0.9655 -1.1949 2.0523 9 6 2.9884 0.1534 2.0532 10 7 3.5999 -0.6248 3.1333 11 6 4.4653 -0.0356 3.9819 12 8 4.7376 1.1391 3.8516 13 6 5.0948 -0.8362 5.0927 14 6 6.0151 0.0503 5.8916 15 6 7.3471 0.1610 5.5360 16 6 8.1916 0.9769 6.2629 17 6 7.7049 1.6774 7.3588 18 8 8.5341 2.4752 8.0790 19 6 7.9747 3.2141 9.0584 20 1 6.9276 3.0941 9.2942 21 6 8.7438 4.1278 9.7628 22 7 10.0192 4.2742 9.4753 23 14 7.9688 5.1509 11.1201 24 1 8.0878 4.4298 12.4127 25 1 8.6684 6.4574 11.2158 26 1 6.5345 5.3789 10.8106 27 6 6.3681 1.5596 7.7167 28 6 5.5272 0.7472 6.9820 29 1 -0.3633 0.4982 0.8988 30 1 -0.3634 0.5294 -0.8808 31 1 -0.3634 -1.0275 -0.0181 32 1 1.2813 -2.6118 -0.7321 33 1 2.9273 -2.5640 -1.4383 34 1 3.8999 -1.7417 0.6164 35 1 2.6403 -2.8550 1.2453 36 1 1.2371 -1.6959 2.8335 37 1 2.4185 0.9796 2.4783 38 1 3.7688 0.5473 1.4023 39 1 3.3818 -1.5642 3.2378 40 1 4.3145 -1.2301 5.7439 41 1 5.6645 -1.6624 4.6672 42 1 7.7261 -0.3880 4.6868 43 1 9.2306 1.0666 5.9820 44 1 10.5573 4.9131 9.9682 45 1 5.9868 2.1028 8.5688 46 1 4.4875 0.6555 7.2596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279476058.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:14 Heat of formation + Delta-G solvation = -133.766625 kcal Electronic energy + Delta-G solvation = -28171.260765 eV Core-core repulsion = 24026.713724 eV Total energy + Delta-G solvation = -4144.547041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.93009 -39.66716 -38.75481 -37.02916 -36.44505 -34.49982 -32.48542 -31.86910 -31.70213 -31.14922 -30.13546 -28.45642 -26.54754 -25.19558 -24.33203 -22.58800 -21.95663 -21.05911 -21.01682 -20.11048 -17.97274 -17.89090 -17.17372 -17.09166 -16.92216 -16.13839 -15.71738 -15.57185 -14.95983 -14.66034 -14.57330 -14.29630 -14.12318 -13.95062 -13.82899 -13.58703 -13.37281 -13.33167 -13.20203 -12.70716 -12.64573 -12.34623 -12.28937 -11.98278 -11.81628 -11.66190 -11.49971 -11.25852 -11.14456 -10.83857 -10.75691 -10.60324 -10.56445 -10.41274 -10.17047 -9.77767 -9.32283 -9.29970 -8.80053 -8.13389 -7.14769 -6.42469 -4.01043 2.25060 2.27217 2.69496 2.97738 3.14491 3.16086 3.20575 3.36451 3.46054 3.91220 3.99036 3.99337 4.29104 4.54231 4.60146 4.68159 4.90303 4.90708 4.98265 5.09836 5.10218 5.18327 5.19599 5.24910 5.29403 5.33336 5.37576 5.47395 5.55417 5.63512 5.63995 5.73642 5.85897 5.93104 6.14607 6.23481 6.34356 6.43494 6.71788 6.93010 7.01099 7.07184 7.24610 7.30165 7.38372 7.47154 7.85744 8.02784 8.22503 9.03202 9.73642 10.75632 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025550 B = 0.001910 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.607922 B =14656.016959 C =15035.151804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.088 3.912 3 H 0.106 0.894 4 O -0.367 6.367 5 C 0.049 3.951 6 C -0.184 4.184 7 C 0.095 3.905 8 O -0.541 6.541 9 C 0.101 3.899 10 N -0.742 5.742 11 C 0.509 3.491 12 O -0.514 6.514 13 C -0.078 4.078 14 C -0.172 4.172 15 C -0.059 4.059 16 C -0.191 4.191 17 C 0.157 3.843 18 O -0.178 6.178 19 C -0.391 4.391 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.863 5.863 23 Si 0.941 3.059 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.268 1.268 27 C -0.232 4.232 28 C -0.056 4.056 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.377 0.623 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.394 0.606 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.117 0.883 44 H 0.270 0.730 45 H 0.127 0.873 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.623 -15.668 -16.341 28.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.030 3.970 3 H 0.124 0.876 4 O -0.286 6.286 5 C -0.027 4.027 6 C -0.222 4.222 7 C 0.053 3.947 8 O -0.347 6.347 9 C -0.023 4.023 10 N -0.398 5.398 11 C 0.296 3.704 12 O -0.387 6.387 13 C -0.118 4.118 14 C -0.174 4.174 15 C -0.078 4.078 16 C -0.211 4.211 17 C 0.103 3.897 18 O -0.081 6.081 19 C -0.467 4.467 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.498 5.498 23 Si 0.766 3.234 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.252 4.252 28 C -0.074 4.074 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.225 0.775 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.228 0.772 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.126 0.874 43 H 0.135 0.865 44 H 0.080 0.920 45 H 0.144 0.856 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.276 -14.179 -17.020 28.092 hybrid contribution -0.246 -0.332 1.371 1.432 sum -17.522 -14.511 -15.649 27.613 Atomic orbital electron populations 1.21941 0.94071 1.03000 1.02249 1.22681 0.95498 0.96340 0.82472 0.87637 1.88976 1.86104 1.20883 1.32599 1.23535 1.00080 0.84430 0.94664 1.23896 1.01603 0.98663 0.98002 1.22782 0.86551 0.93576 0.91787 1.86629 1.32440 1.75458 1.40180 1.21943 0.96251 0.94586 0.89558 1.46034 1.47827 1.13735 1.32178 1.21114 0.78259 0.88467 0.82541 1.90770 1.59847 1.16303 1.71803 1.20401 0.98889 0.97653 0.94872 1.18612 0.93810 1.05274 0.99668 1.20394 0.92662 0.97198 0.97528 1.20155 1.00285 1.03129 0.97511 1.19385 0.89483 0.90454 0.90377 1.83978 1.33544 1.48611 1.41989 1.21329 0.96159 1.18108 1.11114 0.89077 1.25295 0.95541 0.96960 0.98789 1.70039 1.05715 1.34256 1.39783 0.85710 0.78964 0.78859 0.79885 1.19901 1.20258 1.19201 1.21107 0.94191 1.05614 1.04259 1.20500 0.97745 0.94996 0.94205 0.90916 0.92206 0.91944 0.91804 0.88636 0.89085 0.89320 0.77529 0.90334 0.90237 0.77230 0.88981 0.88972 0.87423 0.86538 0.92049 0.85577 0.87852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 8.56 37.16 0.32 -0.85 16 2 C 0.09 0.70 3.76 -26.16 -0.10 0.60 16 3 H 0.11 0.81 7.69 -51.93 -0.40 0.41 16 4 O -0.37 -3.30 11.19 -35.23 -0.39 -3.70 16 5 C 0.05 0.31 7.67 38.33 0.29 0.60 16 6 C -0.18 -0.96 5.72 -24.60 -0.14 -1.10 16 7 C 0.09 0.62 1.04 -89.09 -0.09 0.53 16 8 O -0.54 -3.34 11.22 -35.23 -0.40 -3.74 16 9 C 0.10 0.87 4.54 -4.04 -0.02 0.85 16 10 N -0.74 -6.03 5.12 -60.30 -0.31 -6.34 16 11 C 0.51 6.51 7.82 -10.99 -0.09 6.42 16 12 O -0.51 -9.43 16.03 5.55 0.09 -9.34 16 13 C -0.08 -0.91 5.83 -29.03 -0.17 -1.07 16 14 C -0.17 -2.94 4.38 -104.57 -0.46 -3.40 16 15 C -0.06 -1.09 9.69 -39.60 -0.38 -1.47 16 16 C -0.19 -4.19 9.99 -39.40 -0.39 -4.59 16 17 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 18 O -0.18 -5.20 9.76 0.03 0.00 -5.20 16 19 C -0.39 -11.15 9.49 30.89 0.29 -10.85 16 20 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 21 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 22 N -0.86 -25.68 13.67 55.48 0.76 -24.92 16 23 Si 0.94 20.87 29.55 -169.99 -5.02 15.85 16 24 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 26 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 27 C -0.23 -5.22 9.17 -39.39 -0.36 -5.58 16 28 C -0.06 -1.06 9.69 -39.61 -0.38 -1.44 16 29 H 0.07 0.55 7.85 -51.93 -0.41 0.15 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.48 7.88 -51.93 -0.41 0.07 16 32 H 0.06 0.37 8.11 -51.93 -0.42 -0.06 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.52 7.87 -51.92 -0.41 0.11 16 35 H 0.09 0.29 8.08 -51.93 -0.42 -0.13 16 36 H 0.38 1.19 8.25 45.56 0.38 1.57 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.39 1.78 7.39 -40.82 -0.30 1.48 16 40 H 0.09 0.83 8.08 -51.93 -0.42 0.41 16 41 H 0.09 0.82 8.08 -51.93 -0.42 0.40 16 42 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 44 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.13 2.83 5.64 -52.48 -0.30 2.53 16 46 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 382.53 15.07 5.76 5.76 Total: -1.00 -35.96 382.53 -7.44 -43.40 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.89 Total: 4.96 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -2.04 Total: -16.73 kcal Atomic # 7 Polarization: -31.71 SS G_CDS: 0.45 Total: -31.26 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.70 Total: -21.97 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.96 -7.44 -43.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279476058.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.368 kcal (2) G-P(sol) polarization free energy of solvation -35.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds