Wall clock time and date at job start Tue Mar 31 2020 19:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.87130 * 2 1 4 4 O 1.43748 * 109.87879 * 238.83766 * 2 1 3 5 5 C 1.44379 * 106.97342 * 267.09017 * 4 2 1 6 6 C 1.55219 * 103.57094 * 320.01251 * 5 4 2 7 7 C 1.54098 * 109.87747 * 121.00853 * 2 1 3 8 8 O 1.42903 * 110.48923 * 358.58307 * 7 2 1 9 9 C 1.53003 * 110.48687 * 236.06924 * 7 2 1 10 10 N 1.46503 * 109.47219 * 186.84299 * 9 7 2 11 11 C 1.34768 * 120.00207 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00141 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00358 * 180.02562 * 11 10 9 14 14 C 1.50701 * 109.47082 * 180.02562 * 13 11 10 15 15 C 1.38307 * 119.92751 * 269.72272 * 14 13 11 16 16 C 1.38105 * 120.06147 * 179.73104 * 15 14 13 17 17 C 1.38872 * 119.93430 * 0.56469 * 16 15 14 18 18 O 1.35750 * 120.06955 * 179.68276 * 17 16 15 19 19 C 1.34838 * 116.99807 * 174.49013 * 18 17 16 20 20 H 1.07994 * 119.99916 * 5.06161 * 19 18 17 21 21 C 1.38659 * 119.99657 * 185.05899 * 19 18 17 22 22 N 1.31560 * 120.00104 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99599 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46912 * 90.00267 * 23 21 19 25 25 H 1.48504 * 109.46679 * 209.99903 * 23 21 19 26 26 H 1.48496 * 109.47497 * 329.99962 * 23 21 19 27 27 C 1.38887 * 119.86270 * 359.71205 * 17 16 15 28 28 C 1.38093 * 119.92815 * 359.97438 * 27 17 16 29 29 H 1.09001 * 109.47042 * 298.99739 * 1 2 3 30 30 H 1.09000 * 109.47312 * 58.99433 * 1 2 3 31 31 H 1.08999 * 109.47363 * 178.99258 * 1 2 3 32 32 H 1.09004 * 110.62074 * 78.44245 * 5 4 2 33 33 H 1.09006 * 110.61700 * 201.27641 * 5 4 2 34 34 H 1.09009 * 110.89111 * 278.75095 * 6 5 4 35 35 H 1.08995 * 111.02603 * 155.07237 * 6 5 4 36 36 H 0.96699 * 113.99799 * 178.16033 * 8 7 2 37 37 H 1.08996 * 109.46773 * 66.84526 * 9 7 2 38 38 H 1.08994 * 109.47004 * 306.84547 * 9 7 2 39 39 H 0.97000 * 119.99962 * 359.97438 * 10 9 7 40 40 H 1.09004 * 109.47209 * 300.00099 * 13 11 10 41 41 H 1.08996 * 109.47032 * 60.00376 * 13 11 10 42 42 H 1.07994 * 119.96598 * 359.97438 * 15 14 13 43 43 H 1.07999 * 120.02925 * 180.28229 * 16 15 14 44 44 H 0.96992 * 120.00155 * 180.02562 * 22 21 19 45 45 H 1.08003 * 120.03351 * 179.97438 * 27 17 16 46 46 H 1.07999 * 119.96394 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6995 -1.1568 5 6 2.2280 -2.0724 -0.7619 6 6 2.8316 -1.9536 0.6632 7 6 2.0539 -0.7466 1.2421 8 8 0.9655 -1.1949 2.0523 9 6 2.9884 0.1534 2.0532 10 7 3.5999 -0.6248 3.1333 11 6 4.4653 -0.0356 3.9819 12 8 4.7376 1.1391 3.8516 13 6 5.0948 -0.8362 5.0927 14 6 6.0151 0.0503 5.8916 15 6 7.3471 0.1610 5.5360 16 6 8.1916 0.9769 6.2629 17 6 7.7049 1.6774 7.3588 18 8 8.5341 2.4752 8.0790 19 6 7.9747 3.2141 9.0584 20 1 6.9276 3.0941 9.2942 21 6 8.7438 4.1278 9.7628 22 7 10.0192 4.2742 9.4753 23 14 7.9688 5.1509 11.1201 24 1 8.0878 4.4298 12.4127 25 1 8.6684 6.4574 11.2158 26 1 6.5345 5.3789 10.8106 27 6 6.3681 1.5596 7.7167 28 6 5.5272 0.7472 6.9820 29 1 -0.3633 0.4982 0.8988 30 1 -0.3634 0.5294 -0.8808 31 1 -0.3634 -1.0275 -0.0181 32 1 1.2813 -2.6118 -0.7321 33 1 2.9273 -2.5640 -1.4383 34 1 3.8999 -1.7417 0.6164 35 1 2.6403 -2.8550 1.2453 36 1 1.2371 -1.6959 2.8335 37 1 2.4185 0.9796 2.4783 38 1 3.7688 0.5473 1.4023 39 1 3.3818 -1.5642 3.2378 40 1 4.3145 -1.2301 5.7439 41 1 5.6645 -1.6624 4.6672 42 1 7.7261 -0.3880 4.6868 43 1 9.2306 1.0666 5.9820 44 1 10.5573 4.9131 9.9682 45 1 5.9868 2.1028 8.5688 46 1 4.4875 0.6555 7.2596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279476058.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:13 Heat of formation + Delta-G solvation = -162.356247 kcal Electronic energy + Delta-G solvation = -28172.500504 eV Core-core repulsion = 24026.713724 eV Total energy + Delta-G solvation = -4145.786780 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.57187 -40.91535 -40.21790 -38.24899 -37.51985 -35.32987 -34.39825 -32.99330 -32.32826 -31.98188 -31.76461 -29.32602 -27.92839 -26.92627 -25.07962 -23.63232 -23.22421 -22.34292 -21.65092 -21.16790 -19.84572 -18.91856 -18.51711 -17.84522 -17.66926 -16.94757 -16.66534 -16.54045 -16.29748 -16.07652 -15.74339 -15.51704 -15.50072 -15.11004 -14.80769 -14.72826 -14.49227 -14.39124 -14.12033 -14.02423 -13.73848 -13.60043 -13.12124 -12.96956 -12.83356 -12.71140 -12.49184 -12.47568 -12.29694 -12.23657 -12.13136 -12.13054 -11.69615 -11.17578 -11.06565 -10.95921 -10.77145 -10.66077 -10.16536 -9.75645 -8.89518 -8.47674 -6.15815 0.62200 0.67647 1.33346 1.43021 1.51439 1.72309 2.13416 2.17495 2.83649 2.86072 2.99925 3.17362 3.40808 3.44744 3.53134 3.75165 3.86844 4.06199 4.09040 4.17401 4.22628 4.24306 4.32812 4.42519 4.50427 4.58416 4.60344 4.65828 4.71663 4.73473 4.81559 4.83633 4.94730 5.03684 5.06049 5.09910 5.14772 5.31124 5.33420 5.37630 5.57274 5.72361 5.78388 5.82727 6.02827 6.24094 6.56049 6.71211 6.96851 7.33766 7.78512 8.75792 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025550 B = 0.001910 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.607922 B =14656.016959 C =15035.151804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.079 3.921 3 H 0.098 0.902 4 O -0.390 6.390 5 C 0.041 3.959 6 C -0.176 4.176 7 C 0.109 3.891 8 O -0.547 6.547 9 C 0.105 3.895 10 N -0.714 5.714 11 C 0.512 3.488 12 O -0.580 6.580 13 C -0.076 4.076 14 C -0.146 4.146 15 C -0.058 4.058 16 C -0.208 4.208 17 C 0.110 3.890 18 O -0.234 6.234 19 C -0.414 4.414 20 H 0.100 0.900 21 C -0.026 4.026 22 N -0.921 5.921 23 Si 1.020 2.980 24 H -0.260 1.260 25 H -0.271 1.271 26 H -0.255 1.255 27 C -0.245 4.245 28 C -0.060 4.060 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.392 0.608 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.417 0.583 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.148 0.852 43 H 0.111 0.889 44 H 0.273 0.727 45 H 0.116 0.884 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.607 -18.869 -17.116 32.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 H 0.116 0.884 4 O -0.310 6.310 5 C -0.035 4.035 6 C -0.214 4.214 7 C 0.067 3.933 8 O -0.356 6.356 9 C -0.020 4.020 10 N -0.370 5.370 11 C 0.299 3.701 12 O -0.458 6.458 13 C -0.115 4.115 14 C -0.147 4.147 15 C -0.076 4.076 16 C -0.227 4.227 17 C 0.060 3.940 18 O -0.141 6.141 19 C -0.490 4.490 20 H 0.117 0.883 21 C -0.223 4.223 22 N -0.560 5.560 23 Si 0.839 3.161 24 H -0.184 1.184 25 H -0.196 1.196 26 H -0.179 1.179 27 C -0.265 4.265 28 C -0.078 4.078 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.125 0.875 34 H 0.107 0.893 35 H 0.136 0.864 36 H 0.242 0.758 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.255 0.745 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.165 0.835 43 H 0.129 0.871 44 H 0.082 0.918 45 H 0.134 0.866 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.324 -17.495 -17.832 32.204 hybrid contribution 0.480 0.378 1.304 1.440 sum -19.844 -17.117 -16.528 30.983 Atomic orbital electron populations 1.21877 0.93891 1.02855 1.02057 1.22742 0.95683 0.96395 0.83113 0.88376 1.88954 1.86267 1.22421 1.33360 1.23745 1.00842 0.83261 0.95621 1.23890 1.00988 0.98938 0.97551 1.22508 0.86223 0.93648 0.90925 1.86626 1.32266 1.75706 1.40953 1.21864 0.95980 0.94778 0.89382 1.45697 1.45913 1.14706 1.30652 1.21242 0.78303 0.87557 0.82947 1.90781 1.62348 1.19098 1.73622 1.20543 0.99335 0.97074 0.94561 1.19287 0.94144 1.03123 0.98175 1.20898 0.92976 0.96047 0.97650 1.20454 1.00980 1.03861 0.97425 1.19959 0.90729 0.91477 0.91795 1.83938 1.35413 1.50985 1.43777 1.21815 0.96834 1.18728 1.11595 0.88276 1.26627 0.96058 0.98054 1.01528 1.70187 1.07619 1.36043 1.42125 0.84572 0.78325 0.76853 0.76342 1.18446 1.19554 1.17907 1.21238 0.93821 1.06638 1.04759 1.20951 0.98913 0.93855 0.94117 0.91149 0.92376 0.91962 0.91239 0.87525 0.89323 0.86409 0.75750 0.92120 0.91710 0.74462 0.84942 0.84780 0.83454 0.87116 0.91846 0.86598 0.84297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.56 71.98 0.62 -1.45 16 2 C 0.08 1.15 3.76 30.96 0.12 1.27 16 3 H 0.10 1.50 7.69 -2.39 -0.02 1.48 16 4 O -0.39 -6.51 11.19 -148.98 -1.67 -8.18 16 5 C 0.04 0.40 7.67 72.74 0.56 0.96 16 6 C -0.18 -1.15 5.72 31.98 0.18 -0.97 16 7 C 0.11 1.13 1.04 -9.80 -0.01 1.12 16 8 O -0.55 -4.79 11.22 -148.98 -1.67 -6.46 16 9 C 0.10 1.56 4.54 86.38 0.39 1.95 16 10 N -0.71 -8.47 5.12 -463.07 -2.37 -10.84 16 11 C 0.51 10.92 7.82 87.66 0.69 11.61 16 12 O -0.58 -20.14 16.03 -3.04 -0.05 -20.19 16 13 C -0.08 -1.29 5.83 29.10 0.17 -1.12 16 14 C -0.15 -4.46 4.38 -19.83 -0.09 -4.55 16 15 C -0.06 -1.99 9.69 22.25 0.22 -1.77 16 16 C -0.21 -9.33 9.99 22.39 0.22 -9.10 16 17 C 0.11 5.79 6.65 22.58 0.15 5.94 16 18 O -0.23 -14.72 9.76 -22.82 -0.22 -14.94 16 19 C -0.41 -25.03 9.49 67.92 0.64 -24.38 16 20 H 0.10 5.54 5.20 -2.91 -0.02 5.52 16 21 C -0.03 -1.50 5.49 84.83 0.47 -1.03 16 22 N -0.92 -58.13 13.67 21.61 0.30 -57.83 16 23 Si 1.02 44.21 29.55 68.60 2.03 46.24 16 24 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 27 C -0.25 -11.24 9.17 22.39 0.21 -11.03 16 28 C -0.06 -2.14 9.69 22.25 0.22 -1.92 16 29 H 0.07 0.99 7.85 -2.39 -0.02 0.97 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.85 7.88 -2.39 -0.02 0.83 16 32 H 0.07 0.60 8.11 -2.38 -0.02 0.58 16 33 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.09 0.68 7.87 -2.38 -0.02 0.66 16 35 H 0.12 0.10 8.08 -2.39 -0.02 0.09 16 36 H 0.39 0.56 8.25 -74.06 -0.61 -0.05 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.42 1.22 7.39 -92.71 -0.68 0.53 16 40 H 0.13 1.35 8.08 -2.38 -0.02 1.33 16 41 H 0.13 1.33 8.08 -2.39 -0.02 1.31 16 42 H 0.15 3.87 8.06 -2.91 -0.02 3.84 16 43 H 0.11 4.93 8.06 -2.91 -0.02 4.90 16 44 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 45 H 0.12 5.41 5.64 -2.91 -0.02 5.39 16 46 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -87.53 382.53 0.81 -86.73 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -0.28 Total: 19.96 kcal Atomic # 6 Polarization: -39.22 SS G_CDS: 4.74 Total: -34.48 kcal Atomic # 7 Polarization: -66.59 SS G_CDS: -2.08 Total: -68.67 kcal Atomic # 8 Polarization: -46.16 SS G_CDS: -3.61 Total: -49.77 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -87.53 0.81 -86.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279476058.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.630 kcal (2) G-P(sol) polarization free energy of solvation -87.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds