Wall clock time and date at job start Tue Mar 31 2020 19:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.87220 * 2 1 4 4 O 1.43747 * 110.00729 * 121.09119 * 2 1 3 5 5 C 1.44375 * 106.97604 * 146.00486 * 4 2 1 6 6 C 1.54994 * 103.49102 * 319.94056 * 5 4 2 7 7 C 1.54110 * 109.87846 * 239.00110 * 2 1 3 8 8 O 1.42897 * 110.48784 * 119.58651 * 7 2 1 9 9 C 1.52998 * 110.48513 * 357.06793 * 7 2 1 10 10 N 1.46499 * 109.47154 * 185.00429 * 9 7 2 11 11 C 1.34778 * 120.00154 * 179.72890 * 10 9 7 12 12 O 1.21279 * 119.99859 * 0.27170 * 11 10 9 13 13 C 1.50697 * 119.99970 * 180.27504 * 11 10 9 14 14 C 1.50703 * 109.47070 * 179.97438 * 13 11 10 15 15 C 1.38303 * 119.93211 * 269.72897 * 14 13 11 16 16 C 1.38097 * 120.06606 * 179.72494 * 15 14 13 17 17 C 1.38881 * 119.93086 * 0.57211 * 16 15 14 18 18 O 1.35749 * 120.06573 * 179.68800 * 17 16 15 19 19 C 1.34833 * 117.00010 * 174.48355 * 18 17 16 20 20 H 1.08005 * 119.99826 * 5.05378 * 19 18 17 21 21 C 1.38651 * 120.00211 * 185.05159 * 19 18 17 22 22 N 1.31557 * 120.00061 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99905 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47254 * 60.00006 * 23 21 19 25 25 H 1.48501 * 109.46854 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46851 * 299.99668 * 23 21 19 27 27 C 1.38877 * 119.86118 * 359.69774 * 17 16 15 28 28 C 1.38099 * 119.93290 * 0.02562 * 27 17 16 29 29 H 1.08997 * 109.47517 * 181.00598 * 1 2 3 30 30 H 1.09000 * 109.47214 * 301.00504 * 1 2 3 31 31 H 1.09004 * 109.47468 * 61.00228 * 1 2 3 32 32 H 1.08997 * 110.61632 * 78.44451 * 5 4 2 33 33 H 1.08999 * 110.62038 * 201.28308 * 5 4 2 34 34 H 1.09001 * 110.91244 * 278.82546 * 6 5 4 35 35 H 1.09003 * 110.90801 * 155.22115 * 6 5 4 36 36 H 0.96706 * 113.99548 * 178.15574 * 8 7 2 37 37 H 1.09003 * 109.46760 * 65.00403 * 9 7 2 38 38 H 1.09006 * 109.47451 * 305.00452 * 9 7 2 39 39 H 0.97005 * 119.99707 * 359.97438 * 10 9 7 40 40 H 1.08998 * 109.47273 * 299.99794 * 13 11 10 41 41 H 1.09003 * 109.47424 * 59.99661 * 13 11 10 42 42 H 1.08003 * 119.96266 * 359.97351 * 15 14 13 43 43 H 1.07998 * 120.03295 * 180.27118 * 16 15 14 44 44 H 0.96993 * 119.99778 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.03439 * 179.97438 * 27 17 16 46 46 H 1.08002 * 119.96546 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0218 -0.6975 1.1567 5 6 3.2417 -1.3609 0.7618 6 6 2.9226 -1.8882 -0.6604 7 6 2.0540 -0.7464 -1.2423 8 8 2.8456 0.1249 -2.0523 9 6 0.8900 -1.3192 -2.0533 10 7 1.4147 -2.1231 -3.1600 11 6 0.5664 -2.7344 -4.0103 12 8 -0.6314 -2.6150 -3.8623 13 6 1.1063 -3.5664 -5.1450 14 6 -0.0403 -4.1355 -5.9404 15 6 -0.5706 -5.3672 -5.6021 16 6 -1.6250 -5.8888 -6.3255 17 6 -2.1450 -5.1806 -7.4010 18 8 -3.1773 -5.6936 -8.1179 19 6 -3.7088 -4.9065 -9.0749 20 1 -3.2603 -3.9496 -9.2978 21 6 -4.8311 -5.3255 -9.7730 22 7 -5.3771 -6.4913 -9.5020 23 14 -5.5670 -4.2352 -11.0995 24 1 -4.5551 -3.9931 -12.1590 25 1 -6.7525 -4.9064 -11.6905 26 1 -5.9788 -2.9392 -10.5028 27 6 -1.6067 -3.9465 -7.7415 28 6 -0.5561 -3.4276 -7.0107 29 1 -0.3634 -1.0275 0.0180 30 1 -0.3633 0.5294 0.8808 31 1 -0.3634 0.4982 -0.8988 32 1 4.0708 -0.6539 0.7320 33 1 3.4664 -2.1857 1.4380 34 1 2.3590 -2.8199 -0.6125 35 1 3.8357 -2.0169 -1.2415 36 1 3.2244 -0.3008 -2.8337 37 1 0.2877 -0.5024 -2.4512 38 1 0.2724 -1.9460 -1.4099 39 1 2.3728 -2.2182 -3.2785 40 1 1.7231 -2.9423 -5.7917 41 1 1.7092 -4.3809 -4.7435 42 1 -0.1622 -5.9199 -4.7689 43 1 -2.0415 -6.8487 -6.0582 44 1 -6.1624 -6.7842 -9.9901 45 1 -2.0087 -3.3935 -8.5776 46 1 -0.1373 -2.4678 -7.2748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279476064.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:20 Heat of formation + Delta-G solvation = -130.379934 kcal Electronic energy + Delta-G solvation = -28294.419439 eV Core-core repulsion = 24150.019256 eV Total energy + Delta-G solvation = -4144.400183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.97494 -39.64035 -38.74479 -37.03915 -36.44529 -34.52334 -32.69281 -32.40054 -31.64835 -31.16696 -30.13347 -27.69071 -26.24622 -25.32601 -24.73037 -23.01171 -21.95647 -21.20082 -20.46525 -20.06686 -18.02644 -17.94751 -17.28268 -16.93682 -16.61509 -16.07049 -15.94920 -15.59405 -15.58228 -14.71191 -14.59517 -14.35287 -13.98117 -13.91194 -13.87587 -13.56112 -13.35194 -13.18979 -12.94854 -12.69167 -12.60009 -12.59927 -12.24077 -12.02867 -11.82714 -11.72173 -11.49533 -11.24417 -11.09052 -10.83713 -10.74605 -10.62594 -10.57467 -10.42054 -10.18585 -9.77578 -9.31100 -9.28121 -8.79501 -8.13257 -7.14615 -6.42194 -4.00866 2.25462 2.27376 2.70073 2.99197 3.14763 3.17198 3.18989 3.30344 3.42588 3.88820 3.99225 4.00008 4.33572 4.54213 4.57097 4.68639 4.86634 4.92456 4.97975 5.08984 5.10499 5.15085 5.20748 5.24881 5.29231 5.33627 5.34309 5.38940 5.53483 5.60385 5.64080 5.73863 5.82882 5.85998 6.16120 6.23560 6.34810 6.43591 6.71929 6.93149 6.99277 7.07130 7.24728 7.30747 7.38498 7.47266 7.85892 8.02916 8.23189 9.03352 9.73752 10.75827 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.024441 B = 0.001966 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.333598 B =14238.296038 C =14524.838535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.091 3.909 3 H 0.085 0.915 4 O -0.368 6.368 5 C 0.050 3.950 6 C -0.184 4.184 7 C 0.093 3.907 8 O -0.546 6.546 9 C 0.099 3.901 10 N -0.744 5.744 11 C 0.510 3.490 12 O -0.514 6.514 13 C -0.079 4.079 14 C -0.172 4.172 15 C -0.059 4.059 16 C -0.191 4.191 17 C 0.157 3.843 18 O -0.178 6.178 19 C -0.391 4.391 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.863 5.863 23 Si 0.941 3.059 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.232 4.232 28 C -0.056 4.056 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.379 0.621 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.393 0.607 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.116 0.884 44 H 0.270 0.730 45 H 0.126 0.874 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.943 10.769 16.408 27.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 H 0.102 0.898 4 O -0.287 6.287 5 C -0.026 4.026 6 C -0.222 4.222 7 C 0.051 3.949 8 O -0.352 6.352 9 C -0.025 4.025 10 N -0.399 5.399 11 C 0.296 3.704 12 O -0.387 6.387 13 C -0.118 4.118 14 C -0.173 4.173 15 C -0.078 4.078 16 C -0.211 4.211 17 C 0.103 3.897 18 O -0.081 6.081 19 C -0.468 4.468 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.498 5.498 23 Si 0.766 3.234 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.252 4.252 28 C -0.074 4.074 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.227 0.773 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.226 0.774 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.126 0.874 43 H 0.135 0.865 44 H 0.080 0.920 45 H 0.144 0.856 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 18.424 10.920 17.091 27.401 hybrid contribution 0.440 0.165 -1.339 1.420 sum 18.864 11.085 15.752 26.960 Atomic orbital electron populations 1.22091 0.92509 1.03725 1.03333 1.22544 0.95433 0.96259 0.82461 0.89755 1.88949 1.39584 1.67881 1.32320 1.23493 0.87832 0.96612 0.94709 1.23864 1.00971 0.99342 0.98028 1.22831 0.90416 0.89838 0.91805 1.86586 1.68853 1.39438 1.40358 1.22148 0.95733 0.95830 0.88777 1.46091 1.09724 1.53372 1.30734 1.21101 0.86896 0.79479 0.82881 1.90765 1.15342 1.60223 1.72392 1.20403 0.97897 0.98928 0.94619 1.18610 1.01575 0.97105 1.00058 1.20390 0.95179 0.94691 0.97521 1.20154 1.00978 1.02020 0.97927 1.19384 0.88509 0.91463 0.90353 1.83976 1.40379 1.40562 1.43177 1.21279 1.11049 1.01578 1.12853 0.89136 1.25288 0.95650 0.96926 0.98682 1.70029 1.20997 1.18702 1.40083 0.85785 0.78647 0.79244 0.79771 1.19519 1.20289 1.19500 1.21103 1.01162 0.98424 1.04487 1.20502 0.95248 0.97405 0.94286 0.91053 0.91154 0.90362 0.91710 0.88563 0.89051 0.89313 0.77270 0.90143 0.89846 0.77361 0.88983 0.88988 0.87433 0.86546 0.91996 0.85589 0.87851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 8.41 37.15 0.31 -0.94 16 2 C 0.09 0.75 3.87 -26.15 -0.10 0.65 16 3 H 0.08 0.72 7.97 -51.93 -0.41 0.30 16 4 O -0.37 -3.37 11.19 -35.23 -0.39 -3.77 16 5 C 0.05 0.32 7.72 38.21 0.29 0.61 16 6 C -0.18 -1.01 5.81 -24.72 -0.14 -1.15 16 7 C 0.09 0.65 1.07 -89.09 -0.09 0.55 16 8 O -0.55 -3.75 12.98 -35.23 -0.46 -4.20 16 9 C 0.10 0.87 3.55 -4.04 -0.01 0.85 16 10 N -0.74 -6.15 5.13 -60.29 -0.31 -6.46 16 11 C 0.51 6.52 7.82 -10.99 -0.09 6.43 16 12 O -0.51 -9.37 16.03 5.56 0.09 -9.29 16 13 C -0.08 -0.91 5.83 -29.04 -0.17 -1.08 16 14 C -0.17 -2.94 4.38 -104.57 -0.46 -3.40 16 15 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 16 C -0.19 -4.19 9.99 -39.40 -0.39 -4.58 16 17 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 18 O -0.18 -5.18 9.76 0.04 0.00 -5.18 16 19 C -0.39 -11.15 9.49 30.89 0.29 -10.86 16 20 H 0.09 2.39 5.20 -52.48 -0.27 2.11 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -25.67 13.67 55.48 0.76 -24.91 16 23 Si 0.94 20.85 29.55 -169.99 -5.02 15.82 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 27 C -0.23 -5.21 9.17 -39.40 -0.36 -5.57 16 28 C -0.06 -1.05 9.69 -39.61 -0.38 -1.44 16 29 H 0.07 0.59 6.58 -51.93 -0.34 0.25 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.59 6.97 -51.93 -0.36 0.23 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.54 7.87 -51.93 -0.41 0.13 16 35 H 0.09 0.31 8.09 -51.93 -0.42 -0.11 16 36 H 0.38 1.35 8.12 45.56 0.37 1.72 16 37 H 0.08 0.83 7.02 -51.93 -0.36 0.46 16 38 H 0.08 0.83 6.53 -51.93 -0.34 0.49 16 39 H 0.39 1.84 7.36 -40.82 -0.30 1.54 16 40 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 41 H 0.09 0.83 8.08 -51.93 -0.42 0.41 16 42 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 43 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 44 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.13 2.82 5.64 -52.49 -0.30 2.52 16 46 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 378.68 15.07 5.71 5.71 Total: -1.00 -36.03 378.68 -7.33 -43.36 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -5.66 Total: 5.69 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -2.05 Total: -16.76 kcal Atomic # 7 Polarization: -31.82 SS G_CDS: 0.45 Total: -31.37 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.76 Total: -22.44 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.03 -7.33 -43.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279476064.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.020 kcal (2) G-P(sol) polarization free energy of solvation -36.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds