Wall clock time and date at job start Tue Mar 31 2020 19:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.87220 * 2 1 4 4 O 1.43747 * 110.00729 * 121.09119 * 2 1 3 5 5 C 1.44375 * 106.97604 * 146.00486 * 4 2 1 6 6 C 1.54994 * 103.49102 * 319.94056 * 5 4 2 7 7 C 1.54110 * 109.87846 * 239.00110 * 2 1 3 8 8 O 1.42897 * 110.48784 * 119.58651 * 7 2 1 9 9 C 1.52998 * 110.48513 * 357.06793 * 7 2 1 10 10 N 1.46499 * 109.47154 * 185.00429 * 9 7 2 11 11 C 1.34778 * 120.00154 * 179.72890 * 10 9 7 12 12 O 1.21279 * 119.99859 * 0.27170 * 11 10 9 13 13 C 1.50697 * 119.99970 * 180.27504 * 11 10 9 14 14 C 1.50703 * 109.47070 * 179.97438 * 13 11 10 15 15 C 1.38303 * 119.93211 * 269.72897 * 14 13 11 16 16 C 1.38097 * 120.06606 * 179.72494 * 15 14 13 17 17 C 1.38881 * 119.93086 * 0.57211 * 16 15 14 18 18 O 1.35749 * 120.06573 * 179.68800 * 17 16 15 19 19 C 1.34833 * 117.00010 * 174.48355 * 18 17 16 20 20 H 1.08005 * 119.99826 * 5.05378 * 19 18 17 21 21 C 1.38651 * 120.00211 * 185.05159 * 19 18 17 22 22 N 1.31557 * 120.00061 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99905 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47254 * 60.00006 * 23 21 19 25 25 H 1.48501 * 109.46854 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46851 * 299.99668 * 23 21 19 27 27 C 1.38877 * 119.86118 * 359.69774 * 17 16 15 28 28 C 1.38099 * 119.93290 * 0.02562 * 27 17 16 29 29 H 1.08997 * 109.47517 * 181.00598 * 1 2 3 30 30 H 1.09000 * 109.47214 * 301.00504 * 1 2 3 31 31 H 1.09004 * 109.47468 * 61.00228 * 1 2 3 32 32 H 1.08997 * 110.61632 * 78.44451 * 5 4 2 33 33 H 1.08999 * 110.62038 * 201.28308 * 5 4 2 34 34 H 1.09001 * 110.91244 * 278.82546 * 6 5 4 35 35 H 1.09003 * 110.90801 * 155.22115 * 6 5 4 36 36 H 0.96706 * 113.99548 * 178.15574 * 8 7 2 37 37 H 1.09003 * 109.46760 * 65.00403 * 9 7 2 38 38 H 1.09006 * 109.47451 * 305.00452 * 9 7 2 39 39 H 0.97005 * 119.99707 * 359.97438 * 10 9 7 40 40 H 1.08998 * 109.47273 * 299.99794 * 13 11 10 41 41 H 1.09003 * 109.47424 * 59.99661 * 13 11 10 42 42 H 1.08003 * 119.96266 * 359.97351 * 15 14 13 43 43 H 1.07998 * 120.03295 * 180.27118 * 16 15 14 44 44 H 0.96993 * 119.99778 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.03439 * 179.97438 * 27 17 16 46 46 H 1.08002 * 119.96546 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0218 -0.6975 1.1567 5 6 3.2417 -1.3609 0.7618 6 6 2.9226 -1.8882 -0.6604 7 6 2.0540 -0.7464 -1.2423 8 8 2.8456 0.1249 -2.0523 9 6 0.8900 -1.3192 -2.0533 10 7 1.4147 -2.1231 -3.1600 11 6 0.5664 -2.7344 -4.0103 12 8 -0.6314 -2.6150 -3.8623 13 6 1.1063 -3.5664 -5.1450 14 6 -0.0403 -4.1355 -5.9404 15 6 -0.5706 -5.3672 -5.6021 16 6 -1.6250 -5.8888 -6.3255 17 6 -2.1450 -5.1806 -7.4010 18 8 -3.1773 -5.6936 -8.1179 19 6 -3.7088 -4.9065 -9.0749 20 1 -3.2603 -3.9496 -9.2978 21 6 -4.8311 -5.3255 -9.7730 22 7 -5.3771 -6.4913 -9.5020 23 14 -5.5670 -4.2352 -11.0995 24 1 -4.5551 -3.9931 -12.1590 25 1 -6.7525 -4.9064 -11.6905 26 1 -5.9788 -2.9392 -10.5028 27 6 -1.6067 -3.9465 -7.7415 28 6 -0.5561 -3.4276 -7.0107 29 1 -0.3634 -1.0275 0.0180 30 1 -0.3633 0.5294 0.8808 31 1 -0.3634 0.4982 -0.8988 32 1 4.0708 -0.6539 0.7320 33 1 3.4664 -2.1857 1.4380 34 1 2.3590 -2.8199 -0.6125 35 1 3.8357 -2.0169 -1.2415 36 1 3.2244 -0.3008 -2.8337 37 1 0.2877 -0.5024 -2.4512 38 1 0.2724 -1.9460 -1.4099 39 1 2.3728 -2.2182 -3.2785 40 1 1.7231 -2.9423 -5.7917 41 1 1.7092 -4.3809 -4.7435 42 1 -0.1622 -5.9199 -4.7689 43 1 -2.0415 -6.8487 -6.0582 44 1 -6.1624 -6.7842 -9.9901 45 1 -2.0087 -3.3935 -8.5776 46 1 -0.1373 -2.4678 -7.2748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279476064.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:19 Heat of formation + Delta-G solvation = -159.422684 kcal Electronic energy + Delta-G solvation = -28295.678827 eV Core-core repulsion = 24150.019256 eV Total energy + Delta-G solvation = -4145.659572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.63275 -40.90950 -40.19320 -38.24388 -37.55219 -35.34715 -34.39718 -33.37828 -32.72179 -31.97644 -31.76219 -28.81248 -27.56472 -26.71996 -25.65702 -23.62894 -23.52727 -22.56949 -21.35166 -20.95662 -19.83954 -18.90174 -18.57025 -18.08012 -17.25414 -16.85792 -16.66427 -16.57460 -16.35758 -16.25787 -16.09043 -15.77993 -15.50379 -15.15513 -14.87851 -14.68232 -14.47167 -14.37904 -14.09579 -13.81785 -13.59697 -13.50764 -13.19669 -13.02355 -12.95045 -12.69123 -12.57807 -12.45596 -12.29697 -12.24439 -12.21184 -12.14124 -11.64340 -11.17576 -11.10611 -10.96974 -10.77905 -10.68313 -10.12970 -9.75277 -8.89167 -8.47208 -6.15435 0.62584 0.68120 1.33464 1.44679 1.50225 1.73042 2.14513 2.17973 2.77337 2.85008 2.92983 3.17751 3.37022 3.42786 3.53552 3.79334 3.87157 4.05939 4.07405 4.16686 4.18701 4.22654 4.26540 4.43750 4.49948 4.54998 4.60268 4.62507 4.65715 4.73582 4.80686 4.82081 4.91169 4.96792 4.99922 5.10287 5.14860 5.18413 5.31607 5.39267 5.57619 5.72684 5.78790 5.81209 6.03036 6.24411 6.55803 6.66681 6.97187 7.34305 7.78840 8.76024 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.024441 B = 0.001966 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.333598 B =14238.296038 C =14524.838535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.086 3.914 3 H 0.079 0.921 4 O -0.391 6.391 5 C 0.042 3.958 6 C -0.177 4.177 7 C 0.104 3.896 8 O -0.555 6.555 9 C 0.103 3.897 10 N -0.717 5.717 11 C 0.512 3.488 12 O -0.579 6.579 13 C -0.076 4.076 14 C -0.146 4.146 15 C -0.058 4.058 16 C -0.208 4.208 17 C 0.110 3.890 18 O -0.234 6.234 19 C -0.414 4.414 20 H 0.100 0.900 21 C -0.025 4.025 22 N -0.921 5.921 23 Si 1.020 2.980 24 H -0.255 1.255 25 H -0.270 1.270 26 H -0.260 1.260 27 C -0.245 4.245 28 C -0.060 4.060 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.395 0.605 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.416 0.584 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.148 0.852 43 H 0.111 0.889 44 H 0.273 0.727 45 H 0.116 0.884 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.901 12.505 17.196 31.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 H 0.097 0.903 4 O -0.311 6.311 5 C -0.034 4.034 6 C -0.215 4.215 7 C 0.063 3.937 8 O -0.363 6.363 9 C -0.022 4.022 10 N -0.372 5.372 11 C 0.300 3.700 12 O -0.457 6.457 13 C -0.116 4.116 14 C -0.147 4.147 15 C -0.076 4.076 16 C -0.227 4.227 17 C 0.060 3.940 18 O -0.141 6.141 19 C -0.490 4.490 20 H 0.117 0.883 21 C -0.222 4.222 22 N -0.560 5.560 23 Si 0.838 3.162 24 H -0.179 1.179 25 H -0.195 1.195 26 H -0.185 1.185 27 C -0.265 4.265 28 C -0.078 4.078 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.127 0.873 34 H 0.108 0.892 35 H 0.136 0.864 36 H 0.246 0.754 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.254 0.746 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.165 0.835 43 H 0.129 0.871 44 H 0.082 0.918 45 H 0.134 0.866 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 22.511 12.677 17.915 31.440 hybrid contribution -0.447 -0.277 -1.278 1.382 sum 22.064 12.400 16.637 30.289 Atomic orbital electron populations 1.22071 0.92851 1.03238 1.03413 1.22562 0.95323 0.96235 0.83115 0.90282 1.88929 1.40862 1.68268 1.33042 1.23716 0.87013 0.97071 0.95631 1.23860 1.01725 0.98230 0.97638 1.22598 0.90020 0.90121 0.90994 1.86581 1.68686 1.39886 1.41192 1.22064 0.96349 0.95095 0.88650 1.45762 1.10572 1.51586 1.29296 1.21222 0.86218 0.79283 0.83299 1.90777 1.18069 1.62721 1.74124 1.20545 0.96076 1.00702 0.94232 1.19282 1.01299 0.95661 0.98474 1.20892 0.93621 0.95491 0.97548 1.20452 1.02317 1.02065 0.97874 1.19958 0.88816 0.93402 0.91785 1.83936 1.42916 1.42204 1.45036 1.21776 1.11785 1.02156 1.13329 0.88283 1.26621 0.95773 0.98567 1.01267 1.70181 1.22174 1.21201 1.42412 0.84644 0.77962 0.77101 0.76458 1.17864 1.19478 1.18471 1.21236 1.02492 0.97716 1.05010 1.20950 0.93971 0.98768 0.94139 0.91771 0.91044 0.90377 0.91091 0.87320 0.89240 0.86416 0.75442 0.91808 0.91124 0.74630 0.84991 0.84812 0.83464 0.87124 0.91843 0.86584 0.84313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 8.41 71.98 0.61 -1.84 16 2 C 0.09 1.30 3.87 30.97 0.12 1.42 16 3 H 0.08 1.26 7.97 -2.39 -0.02 1.24 16 4 O -0.39 -6.62 11.19 -148.98 -1.67 -8.29 16 5 C 0.04 0.41 7.72 72.66 0.56 0.97 16 6 C -0.18 -1.25 5.81 31.90 0.19 -1.07 16 7 C 0.10 1.16 1.07 -9.80 -0.01 1.15 16 8 O -0.55 -5.62 12.98 -148.98 -1.93 -7.55 16 9 C 0.10 1.55 3.55 86.38 0.31 1.86 16 10 N -0.72 -8.68 5.13 -463.06 -2.38 -11.06 16 11 C 0.51 10.93 7.82 87.66 0.69 11.61 16 12 O -0.58 -19.92 16.03 -3.03 -0.05 -19.97 16 13 C -0.08 -1.30 5.83 29.10 0.17 -1.13 16 14 C -0.15 -4.45 4.38 -19.83 -0.09 -4.53 16 15 C -0.06 -1.97 9.69 22.25 0.22 -1.76 16 16 C -0.21 -9.30 9.99 22.39 0.22 -9.08 16 17 C 0.11 5.78 6.65 22.58 0.15 5.93 16 18 O -0.23 -14.69 9.76 -22.76 -0.22 -14.91 16 19 C -0.41 -25.05 9.49 67.92 0.64 -24.40 16 20 H 0.10 5.51 5.20 -2.91 -0.02 5.50 16 21 C -0.03 -1.47 5.49 84.83 0.47 -1.01 16 22 N -0.92 -58.09 13.67 21.61 0.30 -57.80 16 23 Si 1.02 44.13 29.55 68.60 2.03 46.15 16 24 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 26 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 27 C -0.25 -11.21 9.17 22.39 0.21 -11.01 16 28 C -0.06 -2.13 9.69 22.25 0.22 -1.91 16 29 H 0.06 1.06 6.58 -2.39 -0.02 1.05 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.17 6.97 -2.39 -0.02 1.15 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.09 0.72 7.87 -2.39 -0.02 0.70 16 35 H 0.12 0.16 8.09 -2.39 -0.02 0.15 16 36 H 0.39 0.91 8.12 -74.05 -0.60 0.31 16 37 H 0.06 1.22 7.02 -2.39 -0.02 1.21 16 38 H 0.07 1.31 6.53 -2.38 -0.02 1.29 16 39 H 0.42 1.36 7.36 -92.70 -0.68 0.68 16 40 H 0.13 1.37 8.08 -2.39 -0.02 1.35 16 41 H 0.13 1.33 8.08 -2.39 -0.02 1.31 16 42 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 43 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 44 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 45 H 0.12 5.40 5.64 -2.91 -0.02 5.38 16 46 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -87.44 378.68 0.48 -86.96 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -0.25 Total: 21.24 kcal Atomic # 6 Polarization: -39.44 SS G_CDS: 4.66 Total: -34.78 kcal Atomic # 7 Polarization: -66.77 SS G_CDS: -2.08 Total: -68.85 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: -3.87 Total: -50.72 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -87.44 0.48 -86.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279476064.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.460 kcal (2) G-P(sol) polarization free energy of solvation -87.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds