Wall clock time and date at job start Tue Mar 31 2020 19:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34225 * 117.00088 * 2 1 4 4 O 1.20825 * 120.00047 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99932 * 180.02562 * 3 2 1 6 6 O 1.42905 * 109.47264 * 180.02562 * 5 3 2 7 7 C 1.35897 * 117.00093 * 179.97438 * 6 5 3 8 8 C 1.38737 * 120.05547 * 359.72645 * 7 6 5 9 9 C 1.38149 * 119.94020 * 179.74326 * 8 7 6 10 10 C 1.38269 * 120.05599 * 0.51033 * 9 8 7 11 11 C 1.50701 * 119.94263 * 179.74419 * 10 9 8 12 12 H 1.09001 * 109.46850 * 160.02189 * 11 10 9 13 13 C 1.52997 * 109.46893 * 280.02189 * 11 10 9 14 14 N 1.46505 * 109.46774 * 40.02270 * 11 10 9 15 15 C 1.34771 * 119.99517 * 155.00209 * 14 11 10 16 16 O 1.21280 * 120.00439 * 359.97438 * 15 14 11 17 17 C 1.50705 * 120.00143 * 179.97438 * 15 14 11 18 18 C 1.52992 * 109.47247 * 179.97438 * 17 15 14 19 19 C 1.50710 * 109.46932 * 179.97438 * 18 17 15 20 20 H 1.08004 * 119.99587 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00130 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99868 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00047 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46804 * 60.00611 * 23 21 19 25 25 H 1.48500 * 109.47151 * 179.97438 * 23 21 19 26 26 H 1.48491 * 109.47393 * 300.00370 * 23 21 19 27 27 C 1.38265 * 120.10911 * 359.76477 * 10 9 8 28 28 C 1.38141 * 120.06229 * 359.97438 * 27 10 9 29 29 H 1.09001 * 109.47619 * 59.99850 * 1 2 3 30 30 H 1.08997 * 109.47680 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47439 * 299.99679 * 1 2 3 32 32 H 1.09001 * 109.47438 * 59.99841 * 5 3 2 33 33 H 1.09004 * 109.47113 * 300.00097 * 5 3 2 34 34 H 1.08000 * 120.02659 * 359.97438 * 8 7 6 35 35 H 1.07994 * 119.96900 * 180.27568 * 9 8 7 36 36 H 1.09009 * 109.46773 * 179.97438 * 13 11 10 37 37 H 1.08997 * 109.47123 * 299.99381 * 13 11 10 38 38 H 1.08992 * 109.47552 * 60.00299 * 13 11 10 39 39 H 0.96993 * 119.99917 * 334.99376 * 14 11 10 40 40 H 1.08995 * 109.47148 * 300.00336 * 17 15 14 41 41 H 1.09006 * 109.46824 * 59.99630 * 17 15 14 42 42 H 1.08998 * 109.47921 * 299.99978 * 18 17 15 43 43 H 1.08998 * 109.47385 * 60.00858 * 18 17 15 44 44 H 0.96997 * 119.99988 * 180.02562 * 22 21 19 45 45 H 1.08004 * 119.96780 * 179.97438 * 27 10 9 46 46 H 1.07995 * 120.03119 * 180.02562 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 8 3.9715 2.6452 0.0001 7 6 5.3076 2.8934 0.0003 8 6 6.2102 1.8398 0.0055 9 6 7.5679 2.0949 0.0002 10 6 8.0275 3.3989 0.0005 11 6 9.5092 3.6743 0.0006 12 1 9.6899 4.6903 -0.3503 13 6 10.0563 3.5204 1.4211 14 7 10.1825 2.7237 -0.8878 15 6 11.3655 3.0460 -1.4472 16 8 11.8724 4.1232 -1.2156 17 6 12.0585 2.0681 -2.3607 18 6 13.3718 2.6762 -2.8569 19 6 14.0651 1.6979 -3.7699 20 1 13.6138 0.7385 -3.9759 21 6 15.2749 2.0280 -4.3430 22 7 15.8241 3.1965 -4.0925 23 14 16.1338 0.8157 -5.4751 24 1 15.2572 0.5158 -6.6356 25 1 17.4080 1.4064 -5.9577 26 1 16.4188 -0.4384 -4.7328 27 6 7.1300 4.4507 0.0011 28 6 5.7713 4.2010 0.0009 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.9557 0.7808 -0.8908 33 1 3.9564 0.7804 0.8892 34 1 5.8516 0.8211 0.0098 35 1 8.2708 1.2750 -0.0002 36 1 11.1281 3.7191 1.4211 37 1 9.5553 4.2277 2.0820 38 1 9.8756 2.5044 1.7720 39 1 9.7769 1.8623 -1.0733 40 1 12.2670 1.1472 -1.8161 41 1 11.4153 1.8484 -3.2129 42 1 13.1630 3.5969 -3.4017 43 1 14.0152 2.8961 -2.0050 44 1 16.6750 3.4289 -4.4959 45 1 7.4915 5.4684 0.0017 46 1 5.0708 5.0229 0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293434055.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:16 Heat of formation + Delta-G solvation = -140.464247 kcal Electronic energy + Delta-G solvation = -27197.573101 eV Core-core repulsion = 23052.735629 eV Total energy + Delta-G solvation = -4144.837472 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.25058 -40.48472 -39.39273 -38.07504 -36.95547 -35.06557 -33.42954 -31.69998 -31.51644 -30.75986 -30.08184 -28.71364 -27.45921 -25.74804 -23.83263 -23.44788 -22.08529 -21.42080 -20.55790 -19.67980 -18.97468 -17.91084 -17.51143 -17.49381 -16.99542 -16.35284 -16.03486 -15.95754 -15.40083 -15.14575 -14.87069 -14.43404 -14.25199 -14.14153 -13.96920 -13.78808 -13.55458 -13.24743 -13.15346 -12.76599 -12.73505 -12.59639 -12.22918 -12.01773 -11.89374 -11.42333 -11.41730 -11.29318 -11.15013 -11.05786 -10.94516 -10.89689 -10.60970 -9.93800 -9.65149 -9.33785 -9.17933 -9.02480 -8.83420 -8.45605 -8.30552 -5.94817 -3.99274 0.99756 1.04127 1.53717 1.54368 3.01826 3.25959 3.34687 3.35050 3.39838 3.41404 3.63175 4.01378 4.29597 4.34585 4.47837 4.48315 4.48511 4.53127 4.54424 4.62793 4.95544 5.00408 5.06891 5.20019 5.32101 5.34332 5.39987 5.54090 5.66830 5.68650 5.71028 5.85241 5.94007 5.99920 6.19103 6.23659 6.26313 6.31260 6.36718 6.78161 6.87555 6.91012 7.10594 7.75285 7.88000 7.89410 8.08641 8.40001 8.79704 9.09183 9.64117 11.16037 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.001737 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.361891 B =16120.451275 C =17300.846841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.463 3.537 4 O -0.483 6.483 5 C 0.069 3.931 6 O -0.296 6.296 7 C 0.122 3.878 8 C -0.204 4.204 9 C -0.072 4.072 10 C -0.116 4.116 11 C 0.184 3.816 12 H 0.094 0.906 13 C -0.157 4.157 14 N -0.739 5.739 15 C 0.511 3.489 16 O -0.533 6.533 17 C -0.130 4.130 18 C 0.037 3.963 19 C -0.528 4.528 20 H 0.055 0.945 21 C 0.058 3.942 22 N -0.889 5.889 23 Si 0.893 3.107 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C -0.067 4.067 28 C -0.140 4.140 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.395 0.605 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.023 0.977 43 H 0.023 0.977 44 H 0.261 0.739 45 H 0.135 0.865 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.066 -6.728 12.226 33.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.273 6.273 3 C 0.304 3.696 4 O -0.368 6.368 5 C -0.008 4.008 6 O -0.210 6.210 7 C 0.078 3.922 8 C -0.223 4.223 9 C -0.090 4.090 10 C -0.117 4.117 11 C 0.079 3.921 12 H 0.112 0.888 13 C -0.216 4.216 14 N -0.394 5.394 15 C 0.300 3.700 16 O -0.408 6.408 17 C -0.170 4.170 18 C 0.000 4.000 19 C -0.567 4.567 20 H 0.073 0.927 21 C -0.143 4.143 22 N -0.528 5.528 23 Si 0.721 3.279 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 C -0.086 4.086 28 C -0.158 4.158 29 H 0.085 0.915 30 H 0.125 0.875 31 H 0.085 0.915 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.230 0.770 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.071 0.929 45 H 0.153 0.847 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -29.913 -5.373 12.346 32.803 hybrid contribution 0.098 -1.287 -0.712 1.474 sum -29.815 -6.659 11.634 32.690 Atomic orbital electron populations 1.23360 0.75087 1.04191 1.02982 1.86442 1.24239 1.32281 1.84325 1.22988 0.91008 0.81994 0.73612 1.90739 1.66661 1.36185 1.43186 1.21854 0.88934 0.84262 1.05706 1.86067 1.21191 1.24433 1.89308 1.18944 0.81003 0.94425 0.97851 1.21198 0.93900 0.98247 1.08922 1.20748 0.94627 0.96463 0.97206 1.19990 0.95361 0.93475 1.02878 1.19658 0.86396 0.95264 0.90810 0.88762 1.22167 1.02279 1.01870 0.95240 1.46379 1.23151 1.19903 1.49969 1.21559 0.79759 0.88789 0.79904 1.90666 1.64595 1.24387 1.61178 1.21870 1.00424 0.97558 0.97173 1.18892 0.88754 0.96006 0.96383 1.21193 1.05153 1.01905 1.28400 0.92684 1.25019 0.97349 0.95265 0.96704 1.69986 1.18095 1.20762 1.43951 0.86654 0.78893 0.81283 0.81099 1.20286 1.21288 1.20275 1.20881 0.91468 0.99333 0.96882 1.20410 0.95725 0.94137 1.05563 0.91507 0.87512 0.91549 0.87330 0.87414 0.85188 0.85405 0.91356 0.91868 0.92531 0.77044 0.90282 0.90293 0.95813 0.95811 0.92910 0.84725 0.84802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.15 10.56 101.05 1.07 1.22 16 2 O -0.36 -2.27 10.56 -39.24 -0.41 -2.69 16 3 C 0.46 3.73 8.03 36.01 0.29 4.02 16 4 O -0.48 -5.65 16.25 -25.48 -0.41 -6.06 16 5 C 0.07 0.42 5.33 36.01 0.19 0.61 16 6 O -0.30 -2.82 9.67 -39.37 -0.38 -3.20 16 7 C 0.12 1.13 6.69 -39.21 -0.26 0.87 16 8 C -0.20 -1.59 9.04 -39.43 -0.36 -1.95 16 9 C -0.07 -0.62 9.05 -39.60 -0.36 -0.98 16 10 C -0.12 -1.17 4.96 -104.60 -0.52 -1.69 16 11 C 0.18 2.24 2.77 -69.08 -0.19 2.05 16 12 H 0.09 1.32 7.44 -51.93 -0.39 0.93 16 13 C -0.16 -1.79 9.46 37.16 0.35 -1.44 16 14 N -0.74 -10.07 5.03 -54.93 -0.28 -10.35 16 15 C 0.51 9.62 7.79 -10.99 -0.09 9.54 16 16 O -0.53 -12.30 15.64 5.56 0.09 -12.21 16 17 C -0.13 -2.61 5.64 -27.88 -0.16 -2.77 16 18 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 19 C -0.53 -14.96 9.11 -34.44 -0.31 -15.28 16 20 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 22 N -0.89 -27.40 13.29 55.43 0.74 -26.67 16 23 Si 0.89 21.64 29.54 -169.99 -5.02 16.61 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 27 C -0.07 -0.64 9.66 -39.61 -0.38 -1.02 16 28 C -0.14 -1.31 9.99 -39.43 -0.39 -1.71 16 29 H 0.07 0.28 8.13 -51.93 -0.42 -0.14 16 30 H 0.11 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.07 0.27 8.13 -51.93 -0.42 -0.15 16 32 H 0.11 0.42 7.68 -51.93 -0.40 0.02 16 33 H 0.11 0.39 7.65 -51.93 -0.40 -0.01 16 34 H 0.13 0.65 6.30 -52.49 -0.33 0.32 16 35 H 0.13 0.91 6.91 -52.49 -0.36 0.54 16 36 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.39 4.25 6.87 -40.82 -0.28 3.97 16 40 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 44 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.13 1.09 8.03 -52.48 -0.42 0.67 16 46 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 395.39 15.07 5.96 5.96 Total: -1.00 -37.31 395.39 -7.83 -45.14 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.76 Total: -0.49 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -1.34 Total: -6.05 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.46 Total: -37.01 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -1.12 Total: -24.16 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.31 -7.83 -45.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293434055.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.329 kcal (2) G-P(sol) polarization free energy of solvation -37.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds